consolidated • Epithelial cell NGEPMJCA7JTKZ2 • EpiMap33536621 ChromHMM Epithelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMJCA7JTKZ2 data_source EpiMap Download track Download number_of_intervals 475,772 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,631,113 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00308_ENCODE_All_hg38.bed.gz processed_file_md5 af58726fad1e1f3f15cf5fdf777e4148 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00308_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00308_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00308_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00308_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00308_18_CALLS_segments.bed.gz raw_file_md5 8c4e9b884c440c2b42519311a25b5be0 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=epithelial cell of prostate;tissue_of_origin=Prostate;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00308;extended_md.donor.ids=ENCDO101AAA;extended_md.collated.donors=ENCDO101AAA;extended_md.accession=ENCSR000EPU;extended_md.biosample.ids=ENCBS702FWT,ENCBS398ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name EpiMap Epithelial cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • HepG2 NGEPMJCGZH27MW • EpiMap33536621 ChromHMM HepG2 Chromatin states Show metadata Download track Track metadata identifier NGEPMJCGZH27MW data_source EpiMap Download track Download number_of_intervals 649,170 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 6,257,773 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00558_ENCODE_2012_All_hg38.bed.gz processed_file_md5 d8d4e11b8de9291f747e161220365f7f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00558_ENCODE_2012_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00558_ENCODE_2012_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00558_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00558_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00558_18_CALLS_segments.bed.gz raw_file_md5 74f51db9cb547dd088e42ac1d9f6eba8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=HepG2;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00558;extended_md.donor.ids=ENCDO000AAC;extended_md.collated.donors=ENCDO000AAC;extended_md.accession=ENCSR000ENP,ENCSR000ATD,ENCSR575RRX,ENCSR000APV,ENCSR000AOK,ENCSR000EJV,ENCSR000DUD,ENCSR000AOL,ENCSR000DUE,ENCSR000AMO,ENCSR000AOM,ENCSR149XIL,ENCSR000AMB,ENCSR000AMC,ENCSR000AMP,ENCSR000DUF,ENCSR000AMD,ENCSR000AMQ;extended_md.biosample.ids=ENCBS645YGY,ENCBS295NFS,ENCBS743JKX,ENCBS773AAA,ENCBS645YGY,ENCBS957WYL,ENCBS048XFP,ENCBS800QIW,ENCBS270KOG,ENCBS295NFS,ENCBS270KOG,ENCBS444QIJ,ENCBS743JKX,ENCBS638AAA,ENCBS270KOG,ENCBS114ENC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=child;extended_md.age=15;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Child track_name EpiMap HepG2 ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • Renal pelvis NGEPMJD5T7IFBU • EpiMap33536621 ChromHMM Renal pelvis Chromatin states Show metadata Download track Track metadata identifier NGEPMJD5T7IFBU data_source EpiMap Download track Download number_of_intervals 303,593 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,984,623 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01494_Roadmap_2021_All_hg38.bed.gz processed_file_md5 228cb8b162a85c1d5e69381892aadc0d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01494_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01494_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01494_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01494_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01494_18_CALLS_segments.bed.gz raw_file_md5 6bac2d3d2d509e3cfd0e9863d3c7368f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=renal pelvis female embryo (105 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01494;extended_md.donor.ids=ENCDO766MZV;extended_md.collated.donors=ENCDO766MZV;extended_md.accession=ENCSR619DRM;extended_md.biosample.ids=ENCBS142XDW;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=105;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal pelvis ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Large intestine NGEPMJEEIZHNSY • EpiMap Enhancers33536621 ChromHMM Large intestine Enhancer Show metadata Download track Track metadata identifier NGEPMJEEIZHNSY data_source EpiMap_Enhancers Download track Download number_of_intervals 99,677 bp_covered 66,932,000 output_type enhancer chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 937,798 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01120_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 b220b9152b437363a18ee31320d7d04f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01120_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01120_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01120_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01120_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01120_18_CALLS_segments.bed.gz raw_file_md5 7fbe86b9d9aded2a3545253511b1aa44 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=large intestine male embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01120;extended_md.donor.ids=ENCDO608XKS;extended_md.collated.donors=ENCDO608XKS;extended_md.accession=ENCSR047FNH;extended_md.biosample.ids=ENCBS028WMZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Large intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Myoblast NGEPMJERSQUYO5 • EpiMap33536621 ChromHMM Myoblast Chromatin states Show metadata Download track Track metadata identifier NGEPMJERSQUYO5 data_source EpiMap Download track Download number_of_intervals 509,666 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,952,205 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01574_ENCODE_2012_All_hg38.bed.gz processed_file_md5 616cfcacb19fb66a4d63e580fcf60e16 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01574_ENCODE_2012_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01574_ENCODE_2012_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01574_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01574_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01574_18_CALLS_segments.bed.gz raw_file_md5 dcbb02090e47420907e3e8a51583bdf6 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=skeletal muscle myoblast male adult (22 years);tissue_of_origin=Skeletal muscle;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01574;extended_md.donor.ids=ENCDO341XKY;extended_md.collated.donors=ENCDO341XKY;extended_md.accession=ENCSR000ANR,ENCSR000ANF,ENCSR000ANG,ENCSR000ANH,ENCSR000ANI,ENCSR000ANJ,ENCSR000ANK,ENCSR000ANL,ENCSR000ANM,ENCSR596NOF,ENCSR000APA,ENCSR000ANQ;extended_md.biosample.ids=ENCBS023XCT,ENCBS914GNL,ENCBS914GNL,ENCBS034BMX,ENCBS023XCT;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=22;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Adult track_name EpiMap Myoblast ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Heart NGEPMJF5LYTSPT • EpiMap33536621 ChromHMM Heart Chromatin states Show metadata Download track Track metadata identifier NGEPMJF5LYTSPT data_source EpiMap Download track Download number_of_intervals 338,511 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,304,311 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00522_Roadmap_2015_All_hg38.bed.gz processed_file_md5 4eb2184f9a2d708e518171f74fd17b93 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00522_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00522_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00522_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00522_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00522_18_CALLS_segments.bed.gz raw_file_md5 9315fa22acff83dc4393ae4bb45609fc data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=heart male embryo (96 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00522;extended_md.donor.ids=ENCDO778DGP;extended_md.collated.donors=ENCDO778DGP;extended_md.accession=ENCSR536NGW;extended_md.biosample.ids=ENCBS312JJA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap Heart ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • B cell NGEPMJGSC5OQME • EpiMap33536621 ChromHMM B cell Chromatin states Show metadata Download track Track metadata identifier NGEPMJGSC5OQME data_source EpiMap Download track Download number_of_intervals 444,566 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,328,180 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00096_ENCODE_All_hg38.bed.gz processed_file_md5 f57553d24d2b00576e4b52ca6cc6c402 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00096_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00096_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00096_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00096_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00096_18_CALLS_segments.bed.gz raw_file_md5 cb97499fa6156b9c334fed61e852c907 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=B cell female adult (27 years) and female adult (43 years);tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00096;extended_md.donor.ids=ENCDO115AAA,ENCDO115AAA,ENCDO114AAA,ENCDO114AAA;extended_md.collated.donors=ENCDO115AAA,ENCDO114AAA,ENCDO114AAA;extended_md.accession=ENCSR000AUX,ENCSR424XBP,ENCSR000AUY,ENCSR799SLA;extended_md.biosample.ids=ENCBS836CYW,ENCBS098ETX,ENCBS098ETX,ENCBS400ARI;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=43,27,27,43;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap B cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • T-helper 17 cell NGEPMJH5SJYOU6 • EpiMap Enhancers33536621 ChromHMM T-helper 17 cell Enhancer Show metadata Download track Track metadata identifier NGEPMJH5SJYOU6 data_source EpiMap_Enhancers Download track Download number_of_intervals 96,478 bp_covered 71,920,000 output_type enhancer chromatin states genome_build hg38 cell_type T-helper 17 cell biosample_type Primary cell biosample_term_id CL:0000899 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 906,750 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01694_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 d2218e3a1ff5a29050350dccde47381f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01694_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01694_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01694_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01694_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01694_18_CALLS_segments.bed.gz raw_file_md5 0194907f51dccefc7eec620ad941a815 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=T-helper 17 cell originated from blood cell;tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01694;extended_md.donor.ids=ENCDO966YSM;extended_md.collated.donors=ENCDO966YSM;extended_md.accession=ENCSR678RCY;extended_md.biosample.ids=ENCBS918TIU;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers T-helper 17 cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Thyroid gland NGEPMJI76DEOBY • EpiMap33536621 ChromHMM Thyroid gland Chromatin states Show metadata Download track Track metadata identifier NGEPMJI76DEOBY data_source EpiMap Download track Download number_of_intervals 190,623 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,864,194 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01831_ENCODE_All_hg38.bed.gz processed_file_md5 8f41e926f97686e8b083d45396422778 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01831_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01831_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01831_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01831_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01831_18_CALLS_segments.bed.gz raw_file_md5 b8b9518d79beadc710689405b50bcbd8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=thyroid gland female adult (51 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01831;extended_md.donor.ids=ENCDO271OUW;extended_md.collated.donors=ENCDO271OUW;extended_md.accession=ENCSR558AXI,ENCSR201FIW,ENCSR657DFR;extended_md.biosample.ids=ENCBS413MJK,ENCBS541DMP,ENCBS721OMD;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=51;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap Thyroid gland ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Skeletal muscle cell NGEPMJIDUURAHQ • EpiMap33536621 ChromHMM Skeletal muscle cell Chromatin states Show metadata Download track Track metadata identifier NGEPMJIDUURAHQ data_source EpiMap Download track Download number_of_intervals 473,590 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Skeletal muscle cell biosample_type Primary cell biosample_term_id CL:0000188 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,612,055 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01572_ENCODE_All_hg38.bed.gz processed_file_md5 a1f022078ab36d5ff74bc3aeb032fa54 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01572_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01572_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01572_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01572_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01572_18_CALLS_segments.bed.gz raw_file_md5 4b436ed9f813261f56766d9ff981f64d data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=skeletal muscle cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01572;extended_md.donor.ids=ENCDO094AAA;extended_md.collated.donors=ENCDO094AAA;extended_md.accession=ENCSR000DXT,ENCSR000EQA;extended_md.biosample.ids=ENCBS073ENC,ENCBS501OSZ,ENCBS909WFM,ENCBS335MXB;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Unknown track_name EpiMap Skeletal muscle cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Smooth muscle cell NGEPMJIGZVTI2I • EpiMap Enhancers33536621 ChromHMM Smooth muscle cell Enhancer Show metadata Download track Track metadata identifier NGEPMJIGZVTI2I data_source EpiMap_Enhancers Download track Download number_of_intervals 95,117 bp_covered 107,369,400 output_type enhancer chromatin states genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 914,148 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01612_ENCODE_Enh_hg38.bed.gz processed_file_md5 ef25eb2eb6c8328ab03fcb7fb996ada9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01612_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01612_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01612_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01612_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01612_18_CALLS_segments.bed.gz raw_file_md5 8de8e7578cecf6faed03cea15dbbe54f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=smooth muscle cell originated from H9;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01612;extended_md.donor.ids=ENCDO222AAA;extended_md.collated.donors=ENCDO222AAA;extended_md.accession=ENCSR783AXV,ENCSR143RMH,ENCSR540UZV,ENCSR672HBY,ENCSR651JDA,ENCSR189XIE,ENCSR090QTV,ENCSR210ZPC,ENCSR493FIV,ENCSR301VIW,ENCSR515PKY,ENCSR130IMV;extended_md.biosample.ids=ENCBS780PCJ,ENCBS899TTJ,ENCBS780PCJ,ENCBS899TTJ;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=5;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers Smooth muscle cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • A673 NGEPMJIYCWOSDH • EpiMap Enhancers33536621 ChromHMM A673 Enhancer Show metadata Download track Track metadata identifier NGEPMJIYCWOSDH data_source EpiMap_Enhancers Download track Download number_of_intervals 151,053 bp_covered 117,044,200 output_type enhancer chromatin states genome_build hg38 cell_type A673 biosample_type Cell line biosample_term_id EFO:0002106 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,397,639 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00035_ENCODE_Enh_hg38.bed.gz processed_file_md5 69c9495b0048c1335d12074752f9bebe wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00035_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00035_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00035_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00035_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00035_18_CALLS_segments.bed.gz raw_file_md5 33beda37c5e9b1319d50d5016c66826b data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=A673;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00035;extended_md.donor.ids=ENCDO027VXA;extended_md.collated.donors=ENCDO027VXA;extended_md.accession=ENCSR581PUR,ENCSR435FGK,ENCSR521IZK,ENCSR714TJD,ENCSR346JWH,ENCSR747BYL,ENCSR988EGR;extended_md.biosample.ids=ENCBS304EKV,ENCBS615MBV,ENCBS615MBV,ENCBS790NPQ,ENCBS385OLC,ENCBS385OLC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=child;extended_md.age=15;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0002106;is_hg38_lifted=no system_category Muscular life_stage Child track_name EpiMap_Enhancers A673 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Child] [Enhancer]
consolidated • CD4+ alpha-beta memory T cell NGEPMJKR3KRG7S • EpiMap33536621 ChromHMM CD4+ alpha-beta memory T cell Chromatin states Show metadata Download track Track metadata identifier NGEPMJKR3KRG7S data_source EpiMap Download track Download number_of_intervals 648,557 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type CD4+ alpha-beta memory T cell biosample_type Primary cell biosample_term_id CL:0000897 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 6,252,681 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00185_Roadmap_2015_All_hg38.bed.gz processed_file_md5 8380f4f398b089a44815bc931c5e39cc wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00185_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00185_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00185_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00185_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00185_18_CALLS_segments.bed.gz raw_file_md5 7fef37ed9c8d3f8651050c8bb05e3587 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=CD4+alpha-beta memory T cell originated from blood cell;tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00185;extended_md.donor.ids=ENCDO966YSM;extended_md.collated.donors=ENCDO966YSM;extended_md.accession=ENCSR807WEO;extended_md.biosample.ids=ENCBS860UZS;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap CD4+ alpha-beta memory T cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Fibroblast NGEPMJL7JNMST7 • EpiMap Enhancers33536621 ChromHMM Fibroblast Enhancer Show metadata Download track Track metadata identifier NGEPMJL7JNMST7 data_source EpiMap_Enhancers Download track Download number_of_intervals 164,133 bp_covered 113,646,200 output_type enhancer chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,513,095 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00168_ENCODE_Enh_hg38.bed.gz processed_file_md5 6fb9d66cf3945d9ffcb4c933795d00ac wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00168_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00168_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00168_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00168_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00168_18_CALLS_segments.bed.gz raw_file_md5 73d8e78d28bdb2092176fd7061e46532 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=cardiac fibroblast female embryo (94 days) and female embryo (98 days);tissue_of_origin=Cardiac;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00168;extended_md.donor.ids=ENCDO298NZG,ENCDO754GEB;extended_md.collated.donors=ENCDO298NZG,ENCDO754GEB;extended_md.accession=ENCSR856NXV;extended_md.biosample.ids=ENCBS385GBH,ENCBS743HHD;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=94,98;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap_Enhancers Fibroblast ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Placental basal plate NGEPMJLNCGV5SD • EpiMap Enhancers33536621 ChromHMM Placental basal plate Enhancer Show metadata Download track Track metadata identifier NGEPMJLNCGV5SD data_source EpiMap_Enhancers Download track Download number_of_intervals 156,333 bp_covered 137,334,600 output_type enhancer chromatin states genome_build hg38 cell_type Placental basal plate biosample_type Tissue biosample_term_id UBERON:8600019 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,433,608 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01446_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 de63e6881c68fa37d56804ad28245906 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01446_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01446_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01446_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01446_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01446_18_CALLS_segments.bed.gz raw_file_md5 ee607fe58e2feef649402a705ffc2524 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=placental basal plate female embryo (40 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01446;extended_md.donor.ids=ENCDO651ROT;extended_md.collated.donors=ENCDO651ROT;extended_md.accession=ENCSR481QER,ENCSR047AFY,ENCSR312NYS,ENCSR194MJA,ENCSR526RGE,ENCSR566ZFQ;extended_md.biosample.ids=ENCBS001PEH;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=40;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=NTR:0003013;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap_Enhancers Placental basal plate ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Endothelial cell NGEPMJMIUZBKGZ • EpiMap33536621 ChromHMM Endothelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMJMIUZBKGZ data_source EpiMap Download track Download number_of_intervals 403,863 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,949,635 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01206_ENCODE_All_hg38.bed.gz processed_file_md5 8accc722e91eb194074d41236f0c7dd1 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01206_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01206_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01206_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01206_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01206_18_CALLS_segments.bed.gz raw_file_md5 3e5050cbc7b248f38f5842975075a914 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=lung microvascular endothelial cell female;tissue_of_origin=Lung miscrovascular;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01206;extended_md.donor.ids=ENCDO238AAA,ENCDO237AAA;extended_md.collated.donors=ENCDO237AAA,ENCDO238AAA;extended_md.accession=ENCSR000EOD,ENCSR000EOE;extended_md.biosample.ids=ENCBS319AAA,ENCBS776PUN,ENCBS815TEQ,ENCBS318AAA;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name EpiMap Endothelial cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Trophoblast NGEPMJMQV4RTNI • EpiMap33536621 ChromHMM Trophoblast Chromatin states Show metadata Download track Track metadata identifier NGEPMJMQV4RTNI data_source EpiMap Download track Download number_of_intervals 608,836 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Trophoblast biosample_type Tissue biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,828,474 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01860_Roadmap_2021_All_hg38.bed.gz processed_file_md5 e0873d801bec82e393716a683bfe8c9e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01860_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01860_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01860_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01860_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01860_18_CALLS_segments.bed.gz raw_file_md5 f7a7f2a0584b55cecdffc10f77d60aa7 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=trophoblast female embryo (40 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01860;extended_md.donor.ids=ENCDO601VUB;extended_md.collated.donors=ENCDO601VUB;extended_md.accession=ENCSR506QLL,ENCSR495OEG,ENCSR356JTB,ENCSR955XFL,ENCSR482KJD;extended_md.biosample.ids=ENCBS111SJO;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=40;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Trophoblast ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Hematopoietic multipotent progenitor cell NGEPMJNNOGUMID • EpiMap33536621 ChromHMM Hematopoietic multipotent progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMJNNOGUMID data_source EpiMap Download track Download number_of_intervals 477,665 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Hematopoietic multipotent progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000837 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,676,558 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00545_ENCODE_All_hg38.bed.gz processed_file_md5 5f7a51a37a6b3f78653f8557ebbead66 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00545_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00545_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00545_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00545_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00545_18_CALLS_segments.bed.gz raw_file_md5 f047371eb949c584443b1681f9da39dd data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=hematopoietic multipotent progenitor cell treated with interleukin-3 for 11 daykit ligand for 11 dayhydrocortisone succinate for 11 dayerythropoietin for 11 day;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00545;extended_md.donor.ids=ENCDO937OUY;extended_md.collated.donors=ENCDO937OUY;extended_md.accession=ENCSR420NOA;extended_md.biosample.ids=ENCBS013CSB,ENCBS378UXT,ENCBS095TOF;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=25;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Hematopoietic multipotent progenitor cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • T47D NGEPMJNTKP2JBE • EpiMap Enhancers33536621 ChromHMM T47D Enhancer Show metadata Download track Track metadata identifier NGEPMJNTKP2JBE data_source EpiMap_Enhancers Download track Download number_of_intervals 96,052 bp_covered 71,571,000 output_type enhancer chromatin states genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 895,435 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01699_ENCODE_Enh_hg38.bed.gz processed_file_md5 9ba0b4472d94e7832295a41a431f18e4 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01699_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01699_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01699_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01699_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01699_18_CALLS_segments.bed.gz raw_file_md5 e6da5b3dfe8b95857298651e94818b04 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=T47D;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01699;extended_md.donor.ids=ENCDO000ABA;extended_md.collated.donors=ENCDO000ABA;extended_md.accession=ENCSR000EQB,ENCSR000ELT;extended_md.biosample.ids=ENCBS610MSM,ENCBS805DMB,ENCBS440ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers T47D ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Large intestine NGEPMJOK2KA3TS • EpiMap33536621 ChromHMM Large intestine Chromatin states Show metadata Download track Track metadata identifier NGEPMJOK2KA3TS data_source EpiMap Download track Download number_of_intervals 560,654 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,467,301 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01119_Roadmap_2015_All_hg38.bed.gz processed_file_md5 84219f3477ed906489b07432ba18054e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01119_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01119_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01119_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01119_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01119_18_CALLS_segments.bed.gz raw_file_md5 5392a58c519b7f33fd555f46c4ee8161 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=large intestine male embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01119;extended_md.donor.ids=ENCDO132ASK,ENCDO119ASK;extended_md.collated.donors=ENCDO119ASK,ENCDO132ASK;extended_md.accession=ENCSR659RHV,ENCSR857AEB,ENCSR998ZWM,ENCSR530LYV,ENCSR413QXO,ENCSR157FDN,ENCSR591JZS;extended_md.biosample.ids=ENCBS547DHM,ENCBS802MPM;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Large intestine ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]