consolidated • Kidney NGEPMQFJ7CERV5 • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMQFJ7CERV5 data_source EpiMap_Enhancers Download track Download number_of_intervals 86,147 bp_covered 59,619,400 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 827,769 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01101_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 d08592e4d0b10e876b3ef804ef86dcc5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01101_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01101_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01101_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01101_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01101_18_CALLS_segments.bed.gz raw_file_md5 ca62b55942f7d038633a6129e60dc8a2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=kidney male embryo (87 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01101;extended_md.donor.ids=ENCDO443KWV;extended_md.collated.donors=ENCDO443KWV;extended_md.accession=ENCSR262QJC;extended_md.biosample.ids=ENCBS478OZL;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=87;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Spleen NGEPMQGKMYWL6D • EpiMap33536621 ChromHMM Spleen Chromatin states Show metadata Download track Track metadata identifier NGEPMQGKMYWL6D data_source EpiMap Download track Download number_of_intervals 514,392 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,952,741 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01631_Roadmap_2015_All_hg38.bed.gz processed_file_md5 c917a1802951ecf15b0b5909f5277e86 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01631_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01631_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01631_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01631_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01631_18_CALLS_segments.bed.gz raw_file_md5 767a4d3f6f3c17cb66b01058766d0c33 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=spleen male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01631;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR490YCL,ENCSR432KIH,ENCSR421FPV,ENCSR408ONP,ENCSR235ZBF,ENCSR466DUB;extended_md.biosample.ids=ENCBS256UPD;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name EpiMap Spleen ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Eye NGEPMQIGQX3LIN • EpiMap33536621 ChromHMM Eye Chromatin states Show metadata Download track Track metadata identifier NGEPMQIGQX3LIN data_source EpiMap Download track Download number_of_intervals 382,673 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Eye biosample_type Tissue biosample_term_id NCIT:C12401 tissue_category Eye encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,758,083 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00329_ENCODE_All_hg38.bed.gz processed_file_md5 42f9110cbd734d48e13f80fbbc27104e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00329_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00329_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00329_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00329_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00329_18_CALLS_segments.bed.gz raw_file_md5 3f9ba98abeb3e67066398b8a66f12e89 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=eye female embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00329;extended_md.donor.ids=ENCDO237NAG;extended_md.collated.donors=ENCDO237NAG;extended_md.accession=ENCSR127PWK;extended_md.biosample.ids=ENCBS446ODB;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Sensory life_stage Embryonic track_name EpiMap Eye ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Lung NGEPMQJACUVR7W • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPMQJACUVR7W data_source EpiMap Download track Download number_of_intervals 412,729 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,043,901 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01188_Roadmap_2021_All_hg38.bed.gz processed_file_md5 b580de44a9ae87b7cdafe780fd435f36 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01188_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01188_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01188_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01188_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01188_18_CALLS_segments.bed.gz raw_file_md5 e6122274f59a707555b5d1e8b1c4ca31 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=lung embryo (67 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01188;extended_md.donor.ids=ENCDO936EIF;extended_md.collated.donors=ENCDO936EIF;extended_md.accession=ENCSR504KZE;extended_md.biosample.ids=ENCBS223UAH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=67;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Peripheral blood mononuclear cell NGEPMQJJP3R3NS • EpiMap Enhancers33536621 ChromHMM Peripheral blood mononuclear cell Enhancer Show metadata Download track Track metadata identifier NGEPMQJJP3R3NS data_source EpiMap_Enhancers Download track Download number_of_intervals 122,747 bp_covered 90,859,000 output_type enhancer chromatin states genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,149,607 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01421_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 013312a200baa62aa3c4da0ad5389292 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01421_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01421_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01421_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01421_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01421_18_CALLS_segments.bed.gz raw_file_md5 97864cb7a2b235de2a6539e1067a248c data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=peripheral blood mononuclear cell male adult (28 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01421;extended_md.donor.ids=ENCDO273TST;extended_md.collated.donors=ENCDO273TST;extended_md.accession=ENCSR804FSU,ENCSR449SFZ,ENCSR489TBW,ENCSR442BHP;extended_md.biosample.ids=ENCBS496NAL;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=28;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers Peripheral blood mononuclear cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Kidney NGEPMQJR2E4FVB • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMQJR2E4FVB data_source EpiMap_Enhancers Download track Download number_of_intervals 83,848 bp_covered 54,598,200 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 798,015 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01100_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 4750e3632b84c15a0dac4e6b6bf14b99 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01100_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01100_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01100_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01100_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01100_18_CALLS_segments.bed.gz raw_file_md5 facf7e243bba3d0288a474c973b83e06 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=kidney male embryo (85 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01100;extended_md.donor.ids=ENCDO342PFI;extended_md.collated.donors=ENCDO342PFI;extended_md.accession=ENCSR757EPJ;extended_md.biosample.ids=ENCBS660HTK;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=85;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • A549 NGEPMQKLRVL7EP • EpiMap Enhancers33536621 ChromHMM A549 Enhancer Show metadata Download track Track metadata identifier NGEPMQKLRVL7EP data_source EpiMap_Enhancers Download track Download number_of_intervals 145,343 bp_covered 125,038,400 output_type enhancer chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,336,942 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00024_GGR_Enh_hg38.bed.gz processed_file_md5 6dd75ae0f182c2864e4407a2fbe1d862 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00024_GGR_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00024_GGR_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00024_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00024_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00024_18_CALLS_segments.bed.gz raw_file_md5 6c2a3acc6014af1a80a80264f9c3f1ac data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 30 minutes;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00024;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR102XUM,ENCSR109KEL,ENCSR593RGY,ENCSR406EMB,ENCSR677QYM,ENCSR215DID;extended_md.biosample.ids=ENCBS875EJK,ENCBS218RFX,ENCBS553BBK,ENCBS594NFK,ENCBS609BAO,ENCBS790LFN,ENCBS179WSX,ENCBS608WXT,ENCBS626ALW,ENCBS444MVA,ENCBS884PLU,ENCBS643KEB,ENCBS131VWP,ENCBS868JZZ,ENCBS896RCE,ENCBS657XCY,ENCBS823HFB,ENCBS087LLT,ENCBS583GBH,ENCBS834ANM;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap_Enhancers A549 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Renal pelvis NGEPMQLPTZTS32 • EpiMap33536621 ChromHMM Renal pelvis Chromatin states Show metadata Download track Track metadata identifier NGEPMQLPTZTS32 data_source EpiMap Download track Download number_of_intervals 342,408 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,361,670 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01153_Roadmap_2021_All_hg38.bed.gz processed_file_md5 d88381e92217f1f6c593236e5884e512 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01153_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01153_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01153_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01153_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01153_18_CALLS_segments.bed.gz raw_file_md5 6fa2a02038f1b58c77e47f49683305b8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=left renal pelvis male embryo (120 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01153;extended_md.donor.ids=ENCDO327QNA;extended_md.collated.donors=ENCDO327QNA;extended_md.accession=ENCSR320SVK;extended_md.biosample.ids=ENCBS226ZND;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=120;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal pelvis ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Thyroid gland NGEPMQMUE7UCU3 • EpiMap Enhancers33536621 ChromHMM Thyroid gland Enhancer Show metadata Download track Track metadata identifier NGEPMQMUE7UCU3 data_source EpiMap_Enhancers Download track Download number_of_intervals 56,846 bp_covered 48,049,800 output_type enhancer chromatin states genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 535,457 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01835_ENCODE_Enh_hg38.bed.gz processed_file_md5 0cde5bc7f96d7cb8ae07a19aab870920 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01835_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01835_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01835_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01835_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01835_18_CALLS_segments.bed.gz raw_file_md5 01b8159821b7aa4eb17821c16264d095 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=thyroid gland male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01835;extended_md.donor.ids=ENCDO451RUA;extended_md.collated.donors=ENCDO451RUA;extended_md.accession=ENCSR902XFY,ENCSR908DTR,ENCSR639NMN,ENCSR699FHH,ENCSR474XFV,ENCSR975NOU,ENCSR203KCB,ENCSR582PKH;extended_md.biosample.ids=ENCBS050AKF,ENCBS995JJM,ENCBS702NUN;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap_Enhancers Thyroid gland ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Caki2 NGEPMQPULX6VID • EpiMap33536621 ChromHMM Caki2 Chromatin states Show metadata Download track Track metadata identifier NGEPMQPULX6VID data_source EpiMap Download track Download number_of_intervals 455,124 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Caki2 biosample_type Cell line biosample_term_id EFO:0002150 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,448,269 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00160_ENCODE_All_hg38.bed.gz processed_file_md5 11fc2a1d2098ce3493697e73e9e4e0e4 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00160_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00160_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00160_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00160_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00160_18_CALLS_segments.bed.gz raw_file_md5 e4410055d92a736b2bdb9f2fce1ce56a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=Caki2;tissue_of_origin=Kidney;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00160;extended_md.donor.ids=ENCDO140IFG;extended_md.collated.donors=ENCDO140IFG;extended_md.accession=ENCSR515EWI;extended_md.biosample.ids=ENCBS768KGZ,ENCBS461KDA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=69;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002150;is_hg38_lifted=no system_category Renal life_stage Adult track_name EpiMap Caki2 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Renal pelvis NGEPMQQ53ILLTL • EpiMap33536621 ChromHMM Renal pelvis Chromatin states Show metadata Download track Track metadata identifier NGEPMQQ53ILLTL data_source EpiMap Download track Download number_of_intervals 355,218 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,484,447 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01496_Roadmap_2021_All_hg38.bed.gz processed_file_md5 308dc7ced880ac6d5abb99c986a2b942 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01496_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01496_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01496_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01496_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01496_18_CALLS_segments.bed.gz raw_file_md5 56e031606ff129bfd929c92cccbcc1b6 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=renal pelvis female embryo (96 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01496;extended_md.donor.ids=ENCDO870OBN,ENCDO613NXA;extended_md.collated.donors=ENCDO613NXA,ENCDO870OBN;extended_md.accession=ENCSR606UAR,ENCSR141DMX;extended_md.biosample.ids=ENCBS930TET,ENCBS051JUB;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=96;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal pelvis ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Middle frontal gyrus NGEPMQQVEZT2GW • EpiMap Enhancers33536621 ChromHMM Middle frontal gyrus Enhancer Show metadata Download track Track metadata identifier NGEPMQQVEZT2GW data_source EpiMap_Enhancers Download track Download number_of_intervals 60,080 bp_covered 42,456,800 output_type enhancer chromatin states genome_build hg38 cell_type Middle frontal gyrus biosample_type Tissue biosample_term_id UBERON:0002702 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 584,637 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01273_ENCODE_Enh_hg38.bed.gz processed_file_md5 31d81c48e0d6ddbc77443d867415c940 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01273_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01273_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01273_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01273_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01273_18_CALLS_segments.bed.gz raw_file_md5 6d0c107665166aa6a03c898795b7e2a6 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=middle frontal gyrus male adult (78 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01273;extended_md.donor.ids=ENCDO317XRR;extended_md.collated.donors=ENCDO317XRR;extended_md.accession=ENCSR318PRQ;extended_md.biosample.ids=ENCBS568MCE,ENCBS299RKW;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=78;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0002702;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Middle frontal gyrus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • 22Rv1 NGEPMQR3CCQ7IJ • EpiMap33536621 ChromHMM 22Rv1 Chromatin states Show metadata Download track Track metadata identifier NGEPMQR3CCQ7IJ data_source EpiMap Download track Download number_of_intervals 304,657 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type 22Rv1 biosample_type Cell line biosample_term_id EFO:0002095 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,979,234 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00002_ENCODE_All_hg38.bed.gz processed_file_md5 6f0f22122d972f2ae45dc01d91330582 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00002_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00002_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00002_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00002_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00002_18_CALLS_segments.bed.gz raw_file_md5 a8fd903bff3adb150798fd46d89e9763 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=22Rv1 treated with 10 nM 17?-hydroxy-5?-androstan-3-one for 4 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00002;extended_md.donor.ids=ENCDO719HIY;extended_md.collated.donors=ENCDO719HIY;extended_md.accession=ENCSR777CQW;extended_md.biosample.ids=ENCBS070BKF,ENCBS626QQL;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002095;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name EpiMap 22Rv1 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Sigmoid colon NGEPMQSOR64MC7 • EpiMap Enhancers33536621 ChromHMM Sigmoid colon Enhancer Show metadata Download track Track metadata identifier NGEPMQSOR64MC7 data_source EpiMap_Enhancers Download track Download number_of_intervals 94,294 bp_covered 83,023,600 output_type enhancer chromatin states genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 867,761 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01543_ENCODE_Enh_hg38.bed.gz processed_file_md5 3095a14f09bb3ae73ef11e7f5484205e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01543_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01543_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01543_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01543_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01543_18_CALLS_segments.bed.gz raw_file_md5 e85e3fd5fcf7308111dae6d9383e1d9d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=sigmoid colon female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01543;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR268ZCF,ENCSR812POE,ENCSR682GOI,ENCSR900UIP,ENCSR846VLJ,ENCSR150YAU;extended_md.biosample.ids=ENCBS835BNK,ENCBS555KUV;extended_md.assay=ChIP-seq,ATAC-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Sigmoid colon ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Urinary bladder NGEPMQTYQCEK46 • EpiMap Enhancers33536621 ChromHMM Urinary bladder Enhancer Show metadata Download track Track metadata identifier NGEPMQTYQCEK46 data_source EpiMap_Enhancers Download track Download number_of_intervals 73,123 bp_covered 49,451,600 output_type enhancer chromatin states genome_build hg38 cell_type Urinary bladder biosample_type Tissue biosample_term_id UBERON:0001255 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 699,876 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01878_ENCODE_Enh_hg38.bed.gz processed_file_md5 ff21f0cdabfc1b1b9ecbf5b4cc9e32e0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01878_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01878_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01878_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01878_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01878_18_CALLS_segments.bed.gz raw_file_md5 80f141ce9c4a1a452f685971bef739fc data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=urinary bladder male embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01878;extended_md.donor.ids=ENCDO647EYG;extended_md.collated.donors=ENCDO647EYG;extended_md.accession=ENCSR813CKU;extended_md.biosample.ids=ENCBS241XYR;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Urinary bladder ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Kidney NGEPMQUUMO36LI • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMQUUMO36LI data_source EpiMap_Enhancers Download track Download number_of_intervals 71,736 bp_covered 49,403,800 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 689,499 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01099_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 515cbceeac13b7c88480eaca69e0c027 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01099_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01099_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01099_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01099_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01099_18_CALLS_segments.bed.gz raw_file_md5 ff0d84be5d4b4b6eb1e694cf2e12c9c5 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=kidney male embryo (105 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01099;extended_md.donor.ids=ENCDO350ZUK;extended_md.collated.donors=ENCDO350ZUK;extended_md.accession=ENCSR499PZA;extended_md.biosample.ids=ENCBS550PQQ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=105;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Angular gyrus NGEPMQV2JZNYCP • EpiMap Enhancers33536621 ChromHMM Angular gyrus Enhancer Show metadata Download track Track metadata identifier NGEPMQV2JZNYCP data_source EpiMap_Enhancers Download track Download number_of_intervals 175,457 bp_covered 123,097,200 output_type enhancer chromatin states genome_build hg38 cell_type Angular gyrus biosample_type Tissue biosample_term_id UBERON:0002686 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,611,108 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00078_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 96f54f6ceb7f163f7b0887274a475372 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00078_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00078_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00078_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00078_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00078_18_CALLS_segments.bed.gz raw_file_md5 61a6ad6216546ae35dada2d6acf04876 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=angular gyrus male adult (81 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00078;extended_md.donor.ids=ENCDO980BZD;extended_md.collated.donors=ENCDO980BZD;extended_md.accession=ENCSR319WAD,ENCSR380KOO,ENCSR263BGI,ENCSR535XRY,ENCSR340DBD,ENCSR615PBJ;extended_md.biosample.ids=ENCBS663NNB;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=81;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=UBERON:0002686;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Angular gyrus ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Muscle NGEPMQXTDFFJNT • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPMQXTDFFJNT data_source EpiMap_Enhancers Download track Download number_of_intervals 89,958 bp_covered 61,096,400 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 854,325 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00352_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 f2981992eb5673e31088ffd9d824d587 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00352_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00352_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00352_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00352_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00352_18_CALLS_segments.bed.gz raw_file_md5 f270f4f563118322af988aff7830500a data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=forelimb muscle female embryo (108 days);tissue_of_origin=Forelimb;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00352;extended_md.donor.ids=ENCDO012PVK;extended_md.collated.donors=ENCDO012PVK;extended_md.accession=ENCSR166TEE;extended_md.biosample.ids=ENCBS988KQJ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Trophoblast NGEPMQXX5IEO6J • EpiMap33536621 ChromHMM Trophoblast Chromatin states Show metadata Download track Track metadata identifier NGEPMQXX5IEO6J data_source EpiMap Download track Download number_of_intervals 389,092 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,799,569 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01852_ENCODE_All_hg38.bed.gz processed_file_md5 ce412278c24e0ab6c698978a7493dbec wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01852_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01852_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01852_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01852_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01852_18_CALLS_segments.bed.gz raw_file_md5 0f7b9b225f0e2f3019bfc955cfe392f8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=trophoblast cell embryo (17 weeks) and embryo (18 weeks);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01852;extended_md.donor.ids=ENCDO070KYQ,ENCDO960IHW;extended_md.collated.donors=ENCDO070KYQ,ENCDO960IHW;extended_md.accession=ENCSR593LTJ;extended_md.biosample.ids=ENCBS626CAG,ENCBS994UWD;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=18,17;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Trophoblast ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Small intestine NGEPMQY5VH3I3E • EpiMap Enhancers33536621 ChromHMM Small intestine Enhancer Show metadata Download track Track metadata identifier NGEPMQY5VH3I3E data_source EpiMap_Enhancers Download track Download number_of_intervals 98,930 bp_covered 65,809,000 output_type enhancer chromatin states genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 930,619 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01604_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 ac628a0c6aa3534382bdb3952f1840e4 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01604_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01604_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01604_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01604_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01604_18_CALLS_segments.bed.gz raw_file_md5 b42b26bd1ce36e38f89ace388aa2a159 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=small intestine male embryo (91 day);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01604;extended_md.donor.ids=ENCDO375VTO;extended_md.collated.donors=ENCDO375VTO;extended_md.accession=ENCSR594OWA;extended_md.biosample.ids=ENCBS623YHX;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=91;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Small intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]