consolidated • Lung NGEPMRDYQQ7C46 • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPMRDYQQ7C46 data_source EpiMap Download track Download number_of_intervals 519,451 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,037,901 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01196_Roadmap_2015_All_hg38.bed.gz processed_file_md5 c81ae3a17744af637af2003e26e41757 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01196_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01196_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01196_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01196_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01196_18_CALLS_segments.bed.gz raw_file_md5 e83e2314114f82d41c0cc0feb9a07ac9 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=lung female embryo (82 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01196;extended_md.donor.ids=ENCDO058TGV;extended_md.collated.donors=ENCDO058TGV;extended_md.accession=ENCSR727VOB,ENCSR567ILB,ENCSR067BMB;extended_md.biosample.ids=ENCBS241YJW;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=82;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Muscle NGEPMRE7AITUQV • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPMRE7AITUQV data_source EpiMap Download track Download number_of_intervals 459,504 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,474,511 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01325_Roadmap_2015_All_hg38.bed.gz processed_file_md5 3b1bba90cc524bffea1a2081e9517527 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01325_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01325_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01325_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01325_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01325_18_CALLS_segments.bed.gz raw_file_md5 6b11a8e5f0a06920322e4aa5136bce34 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of leg male embryo (105 days);tissue_of_origin=Leg;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01325;extended_md.donor.ids=ENCDO171HMD;extended_md.collated.donors=ENCDO171HMD;extended_md.accession=ENCSR514QHN;extended_md.biosample.ids=ENCBS023IXF;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=105;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Muscle NGEPMREXIOF453 • EpiMap Enhancers33536621 ChromHMM Muscle Enhancer Show metadata Download track Track metadata identifier NGEPMREXIOF453 data_source EpiMap_Enhancers Download track Download number_of_intervals 93,543 bp_covered 63,606,400 output_type enhancer chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 884,407 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01324_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 761d9ff8c38917e4a5370b30fc5191c6 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01324_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01324_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01324_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01324_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01324_18_CALLS_segments.bed.gz raw_file_md5 92fb114f1d890edf4097bd045fc26855 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=muscle of leg male embryo (104 days);tissue_of_origin=Leg;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01324;extended_md.donor.ids=ENCDO024JHT;extended_md.collated.donors=ENCDO024JHT;extended_md.accession=ENCSR861NUH;extended_md.biosample.ids=ENCBS841QUZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=104;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap_Enhancers Muscle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Brain NGEPMRHZBLK2YE • EpiMap Enhancers33536621 ChromHMM Brain Enhancer Show metadata Download track Track metadata identifier NGEPMRHZBLK2YE data_source EpiMap_Enhancers Download track Download number_of_intervals 89,301 bp_covered 63,639,400 output_type enhancer chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 860,900 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00127_ENCODE_Enh_hg38.bed.gz processed_file_md5 e41cb8291cefaa78f134f188c5416640 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00127_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00127_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00127_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00127_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00127_18_CALLS_segments.bed.gz raw_file_md5 2af14bfd7eb6e51409566eadef07d027 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=brain embryo (80 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00127;extended_md.donor.ids=ENCDO662IIE;extended_md.collated.donors=ENCDO662IIE;extended_md.accession=ENCSR507GFJ;extended_md.biosample.ids=ENCBS694XIX;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=80;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap_Enhancers Brain ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • T-helper 2 cell NGEPMRIQRGFZWS • EpiMap33536621 ChromHMM T-helper 2 cell Chromatin states Show metadata Download track Track metadata identifier NGEPMRIQRGFZWS data_source EpiMap Download track Download number_of_intervals 444,860 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type T-helper 2 cell biosample_type Primary cell biosample_term_id CL:0000546 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,339,878 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01696_ENCODE_All_hg38.bed.gz processed_file_md5 dcbdf892db3a0a871906293e351f171b wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01696_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01696_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01696_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01696_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01696_18_CALLS_segments.bed.gz raw_file_md5 b66149762c58052807032b39115d8e9b data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=T-helper 2 cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01696;extended_md.donor.ids=ENCDO287AAA;extended_md.collated.donors=ENCDO287AAA;extended_md.accession=ENCSR000EQG;extended_md.biosample.ids=ENCBS152AAA,ENCBS748KUK;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Unknown track_name EpiMap T-helper 2 cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • T47D NGEPMRJZCWW2YY • EpiMap33536621 ChromHMM T47D Chromatin states Show metadata Download track Track metadata identifier NGEPMRJZCWW2YY data_source EpiMap Download track Download number_of_intervals 422,126 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,126,883 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01705_ENCODE_All_hg38.bed.gz processed_file_md5 cc6cfe2f566c3a0a1b8f26d73427ac33 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01705_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01705_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01705_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01705_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01705_18_CALLS_segments.bed.gz raw_file_md5 676c4c801557948fdc9ce626f8ef6802 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=T47D treated with 10 nM 17?-estradiol for 30 minutes;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01705;extended_md.donor.ids=ENCDO000ABA;extended_md.collated.donors=ENCDO000ABA;extended_md.accession=ENCSR000ELS;extended_md.biosample.ids=ENCBS442ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap T47D ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Stomach NGEPMRK4M6GS4Z • EpiMap Enhancers33536621 ChromHMM Stomach Enhancer Show metadata Download track Track metadata identifier NGEPMRK4M6GS4Z data_source EpiMap_Enhancers Download track Download number_of_intervals 88,886 bp_covered 63,759,800 output_type enhancer chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 826,309 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01637_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 069fb374edb049e6f86e24a8518d5126 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01637_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01637_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01637_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01637_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01637_18_CALLS_segments.bed.gz raw_file_md5 8a80d2ef748c86fa282133811dcf030f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=stomach female adult (30 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01637;extended_md.donor.ids=ENCDO424HVB;extended_md.collated.donors=ENCDO424HVB;extended_md.accession=ENCSR582UTE;extended_md.biosample.ids=ENCBS552KUZ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=30;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap_Enhancers Stomach ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Keratinocyte NGEPMRKC4RLSGM • EpiMap Enhancers33536621 ChromHMM Keratinocyte Enhancer Show metadata Download track Track metadata identifier NGEPMRKC4RLSGM data_source EpiMap_Enhancers Download track Download number_of_intervals 45,591 bp_covered 27,675,000 output_type enhancer chromatin states genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 448,443 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00361_GGR_Enh_hg38.bed.gz processed_file_md5 6e86e41a18e395425beae42bc06597a0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00361_GGR_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00361_GGR_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00361_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00361_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00361_18_CALLS_segments.bed.gz raw_file_md5 931ef89ca24ee7410296598f60bf4fae data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2.5 days;tissue_of_origin=Foreskin;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00361;extended_md.donor.ids=ENCDO615NVN,ENCDO005EGE,ENCDO005EGE,ENCDO615NVN;extended_md.collated.donors=ENCDO615NVN,ENCDO005EGE,ENCDO005EGE;extended_md.accession=ENCSR245LNF,ENCSR793NQA,ENCSR392EMS,ENCSR709ABP;extended_md.biosample.ids=ENCBS079LRU,ENCBS299ONK,ENCBS299ONK,ENCBS079LRU;extended_md.assay=ChIP-seq,ATAC-seq;extended_md.life.stage=newborn;extended_md.age=45326;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name EpiMap_Enhancers Keratinocyte ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Newborn] [Enhancer]
consolidated • Islet precursor cell NGEPMRKE3X64HX • EpiMap Enhancers33536621 ChromHMM Islet precursor cell Enhancer Show metadata Download track Track metadata identifier NGEPMRKE3X64HX data_source EpiMap_Enhancers Download track Download number_of_intervals 83,669 bp_covered 57,830,400 output_type enhancer chromatin states genome_build hg38 cell_type Islet precursor cell biosample_type In vitro differentiated cells biosample_term_id Not available tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 789,782 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00758_ENCODE_Enh_hg38.bed.gz processed_file_md5 e250817f81db963f1c0ad917dfdd0f1f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00758_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00758_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00758_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00758_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00758_18_CALLS_segments.bed.gz raw_file_md5 d7fc16367a6028a939d1f25f328d73a0 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=islet precursor cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00758;extended_md.donor.ids=ENCDO222AAA;extended_md.collated.donors=ENCDO222AAA;extended_md.accession=ENCSR224FOA;extended_md.biosample.ids=ENCBS928AKR,ENCBS587BAO;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=5;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=NTR:0001484;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name EpiMap_Enhancers Islet precursor cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Lung NGEPMRLUY3HD22 • EpiMap33536621 ChromHMM Lung Chromatin states Show metadata Download track Track metadata identifier NGEPMRLUY3HD22 data_source EpiMap Download track Download number_of_intervals 408,124 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,983,913 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01192_Roadmap_2021_All_hg38.bed.gz processed_file_md5 0430a3ee2804aa46fa23e67af8130d63 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01192_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01192_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01192_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01192_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01192_18_CALLS_segments.bed.gz raw_file_md5 25849f34f4b993c4663e9a34b345e852 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=lung female embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01192;extended_md.donor.ids=ENCDO440SUR;extended_md.collated.donors=ENCDO440SUR;extended_md.accession=ENCSR482HQE;extended_md.biosample.ids=ENCBS583FBB;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap Lung ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Adrenal gland NGEPMRO3UBVK6V • EpiMap Enhancers33536621 ChromHMM Adrenal gland Enhancer Show metadata Download track Track metadata identifier NGEPMRO3UBVK6V data_source EpiMap_Enhancers Download track Download number_of_intervals 59,061 bp_covered 39,930,400 output_type enhancer chromatin states genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 574,185 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00052_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 6f5348c0ff4f118fa276fbf92664aec9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00052_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00052_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00052_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00052_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00052_18_CALLS_segments.bed.gz raw_file_md5 f00e8df042c9674e493e5809ee90dd41 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=adrenal gland female embryo (85 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00052;extended_md.donor.ids=ENCDO527XLA;extended_md.collated.donors=ENCDO527XLA;extended_md.accession=ENCSR866RCY;extended_md.biosample.ids=ENCBS660CJK;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=85;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name EpiMap_Enhancers Adrenal gland ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Small intestine NGEPMRO64FCKUM • EpiMap Enhancers33536621 ChromHMM Small intestine Enhancer Show metadata Download track Track metadata identifier NGEPMRO64FCKUM data_source EpiMap_Enhancers Download track Download number_of_intervals 98,510 bp_covered 65,420,000 output_type enhancer chromatin states genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 926,981 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01600_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 9827f6cefa44d7cd432c17d327c3e309 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01600_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01600_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01600_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01600_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01600_18_CALLS_segments.bed.gz raw_file_md5 d136228623e644304e193f5fc92f6674 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=small intestine male embryo (105 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01600;extended_md.donor.ids=ENCDO171HMD;extended_md.collated.donors=ENCDO171HMD;extended_md.accession=ENCSR188JLO;extended_md.biosample.ids=ENCBS513AWH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=105;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Small intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Naive B cell NGEPMROHUL7AZL • EpiMap Enhancers33536621 ChromHMM Naive B cell Enhancer Show metadata Download track Track metadata identifier NGEPMROHUL7AZL data_source EpiMap_Enhancers Download track Download number_of_intervals 143,201 bp_covered 115,429,000 output_type enhancer chromatin states genome_build hg38 cell_type Naive B cell biosample_type Primary cell biosample_term_id CL:0000788 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,342,035 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01345_ENCODE_Enh_hg38.bed.gz processed_file_md5 77b66308821ff660aba98941ca55a3ed wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01345_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01345_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01345_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01345_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01345_18_CALLS_segments.bed.gz raw_file_md5 c1720b86532aa049778db04332abb547 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=naive B cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01345;extended_md.donor.ids=ENCDO270AAA;extended_md.collated.donors=ENCDO270AAA;extended_md.accession=ENCSR000ELG;extended_md.biosample.ids=ENCBS561ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers Naive B cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Heart NGEPMROY5H6QM6 • EpiMap33536621 ChromHMM Heart Chromatin states Show metadata Download track Track metadata identifier NGEPMROY5H6QM6 data_source EpiMap Download track Download number_of_intervals 344,238 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,362,360 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00519_Roadmap_2021_All_hg38.bed.gz processed_file_md5 c97ba465785cf5e490c5efffdbcfb999 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00519_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00519_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00519_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00519_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00519_18_CALLS_segments.bed.gz raw_file_md5 fb0c8d314e5b49e64b054e7f1be1f8a7 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=heart male embryo (120 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00519;extended_md.donor.ids=ENCDO249ZDZ;extended_md.collated.donors=ENCDO249ZDZ;extended_md.accession=ENCSR392GCE;extended_md.biosample.ids=ENCBS172XKB;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=120;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap Heart ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • T-helper 2 cell NGEPMRPJFBDE5S • EpiMap Enhancers33536621 ChromHMM T-helper 2 cell Enhancer Show metadata Download track Track metadata identifier NGEPMRPJFBDE5S data_source EpiMap_Enhancers Download track Download number_of_intervals 113,564 bp_covered 91,753,400 output_type enhancer chromatin states genome_build hg38 cell_type T-helper 2 cell biosample_type Primary cell biosample_term_id CL:0000546 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,073,165 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01696_ENCODE_Enh_hg38.bed.gz processed_file_md5 6f9d366fe45b81a4e7906ccf4cf6599f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01696_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01696_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01696_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01696_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01696_18_CALLS_segments.bed.gz raw_file_md5 ff028e648af041144d824b1bc6d9efcb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=T-helper 2 cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01696;extended_md.donor.ids=ENCDO287AAA;extended_md.collated.donors=ENCDO287AAA;extended_md.accession=ENCSR000EQG;extended_md.biosample.ids=ENCBS152AAA,ENCBS748KUK;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Unknown track_name EpiMap_Enhancers T-helper 2 cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • T-cell NGEPMRPRDEZQ6M • EpiMap33536621 ChromHMM T-cell Chromatin states Show metadata Download track Track metadata identifier NGEPMRPRDEZQ6M data_source EpiMap Download track Download number_of_intervals 434,913 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,235,306 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01687_Roadmap_2015_All_hg38.bed.gz processed_file_md5 06b3f425790607371b77d9d4db6106e0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01687_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01687_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01687_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01687_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01687_18_CALLS_segments.bed.gz raw_file_md5 c1ad8df223c9949c6c87664174fd878f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=T-cell male adult (21 year);tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01687;extended_md.donor.ids=ENCDO190HXC;extended_md.collated.donors=ENCDO190HXC;extended_md.accession=ENCSR115GFR,ENCSR414IHC,ENCSR218OEZ,ENCSR716VIQ,ENCSR628IRM;extended_md.biosample.ids=ENCBS980PVB,ENCBS881BDJ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=21;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap T-cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • HAP-1 NGEPMRQ4ARNTHE • EpiMap Enhancers33536621 ChromHMM HAP-1 Enhancer Show metadata Download track Track metadata identifier NGEPMRQ4ARNTHE data_source EpiMap_Enhancers Download track Download number_of_intervals 54,761 bp_covered 36,706,400 output_type enhancer chromatin states genome_build hg38 cell_type HAP-1 biosample_type Cell line biosample_term_id EFO:0007598 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 539,210 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00491_ENCODE_Enh_hg38.bed.gz processed_file_md5 a3b239f7f307857024b7dec828d95ace wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00491_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00491_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00491_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00491_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00491_18_CALLS_segments.bed.gz raw_file_md5 08cf7ab2ec1c49db6fe62946d20773e7 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=HAP-1;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00491;extended_md.donor.ids=ENCDO763VKT;extended_md.collated.donors=ENCDO763VKT;extended_md.accession=ENCSR620QNS;extended_md.biosample.ids=ENCBS217AEF,ENCBS912MMS;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=44;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007598;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers HAP-1 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • MCF-7 NGEPMRQXE4TLU3 • EpiMap Enhancers33536621 ChromHMM MCF-7 Enhancer Show metadata Download track Track metadata identifier NGEPMRQXE4TLU3 data_source EpiMap_Enhancers Download track Download number_of_intervals 132,594 bp_covered 110,985,600 output_type enhancer chromatin states genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,236,051 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01235_ENCODE_Enh_hg38.bed.gz processed_file_md5 dad1de8fa864408b723afa86d137aa8a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01235_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01235_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01235_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01235_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01235_18_CALLS_segments.bed.gz raw_file_md5 146960ce721a4003517bcd4be41c7d93 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=MCF-7 originated from MCF-7;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01235;extended_md.donor.ids=ENCDO000AAE;extended_md.collated.donors=ENCDO000AAE;extended_md.accession=ENCSR000EKZ;extended_md.biosample.ids=ENCBS252AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=69;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers MCF-7 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • HUES6 NGEPMRR66SSYIS • EpiMap Enhancers33536621 ChromHMM HUES6 Enhancer Show metadata Download track Track metadata identifier NGEPMRR66SSYIS data_source EpiMap_Enhancers Download track Download number_of_intervals 188,418 bp_covered 131,425,600 output_type enhancer chromatin states genome_build hg38 cell_type HUES6 biosample_type Cell line biosample_term_id EFO:0007086 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,753,713 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00716_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 a8b2dae9b2b726e278fa4725bf48f050 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00716_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00716_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00716_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00716_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00716_18_CALLS_segments.bed.gz raw_file_md5 f27f8158f0cc85d478386b2da8040f56 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=HUES6;tissue_of_origin=Embryo;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00716;extended_md.donor.ids=ENCDO734LQV;extended_md.collated.donors=ENCDO734LQV;extended_md.accession=ENCSR919DBC,ENCSR315IRO,ENCSR237OBF,ENCSR410GUN,ENCSR583ALI,ENCSR176ABZ,ENCSR862SCU;extended_md.biosample.ids=ENCBS530IZG,ENCBS530IZG,ENCBS153ORV,ENCBS153ORV,ENCBS530IZG;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007086;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers HUES6 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Large intestine NGEPMRRQSU3G5J • EpiMap33536621 ChromHMM Large intestine Chromatin states Show metadata Download track Track metadata identifier NGEPMRRQSU3G5J data_source EpiMap Download track Download number_of_intervals 324,386 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,165,398 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01114_Roadmap_2021_All_hg38.bed.gz processed_file_md5 e9f99a869320d6f771ff3ad8c367f136 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01114_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01114_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01114_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01114_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01114_18_CALLS_segments.bed.gz raw_file_md5 75b0e813ee07058ea9be150d9cbfd41a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=large intestine female embryo (120 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01114;extended_md.donor.ids=ENCDO555CMC;extended_md.collated.donors=ENCDO555CMC;extended_md.accession=ENCSR133SPH;extended_md.biosample.ids=ENCBS699KFK;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=120;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Large intestine ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]