ATF1 • K562 NGENCIZ67GEO7O • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCIZ67GEO7O data_source ENCODE Download track Download number_of_intervals 2,361 bp_covered 950,345 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR085XDP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 46,193 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF899JSK.bed.gz processed_file_md5 ba6a789eb3fc6cf309e71dac3d734c1b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF899JSK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF899JSK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF899JSK/@@download/ENCFF899JSK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF899JSK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0ba7357cc471be285f64f0a9d22001ef data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231052;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ATF1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR085XDP] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • HepG2 NGENCKBNLCAPYF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCKBNLCAPYF data_source ENCODE Download track Download number_of_intervals 13,991 bp_covered 7,644,655 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR253OON biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 272,961 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF239LTQ.bed.gz processed_file_md5 b3e0db37eac0b10c836301792845d0a2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF239LTQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF239LTQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF239LTQ/@@download/ENCFF239LTQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF239LTQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 73bfc4d52cfb952c511ad3a4394d3664 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE96003,FactorBook:ENCSR253OON;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-14,2016-06-13;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR253OON] [Life stage: Child] [TF ChIP-seq peaks]
ATF1 • K562 NGENCMTOQNMZ4M • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCMTOQNMZ4M data_source ENCODE Download track Download number_of_intervals 2,135 bp_covered 470,820 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1 technical_replicate 1_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 39,558 downloaded_date 06/12/2022 release_date 02/04/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF979VRQ.bed.gz processed_file_md5 cf5b65e87781725dbc65a757c8fe44e8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF979VRQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF979VRQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF979VRQ/@@download/ENCFF979VRQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF979VRQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7319fb9b33fc1aa2ee177216ea39e55e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR159OCC,GEO:GSE95956;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-14,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR159OCC] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • K562 NGENCNBEBE5RST • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCNBEBE5RST data_source ENCODE Download track Download number_of_intervals 4,221 bp_covered 1,869,830 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR085XDP biological_replicate 2 technical_replicate 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 82,515 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF275PYH.bed.gz processed_file_md5 ae37fdc5f0ddcbfb336829fccacd0d1f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF275PYH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF275PYH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF275PYH/@@download/ENCFF275PYH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF275PYH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a182426e60de2e47b0d16540f7dd181a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231052;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR085XDP] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • WTC11 NGENCNBECCHYQS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCNBECCHYQS data_source ENCODE Download track Download number_of_intervals 2,987 bp_covered 1,337,036 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR887VJM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 60,864 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF563OAK.bed.gz processed_file_md5 76f2dd06e8f217ccf7a3457e8ca57b0f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF563OAK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF563OAK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF563OAK/@@download/ENCFF563OAK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF563OAK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2347f7dac5ceb74405fe8ffe886573d1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231144;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-09-26;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ATF1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR887VJM] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • K562 NGENCOTJK5N2XD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCOTJK5N2XD data_source ENCODE Download track Download number_of_intervals 31,798 bp_covered 18,934,034 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 1 technical_replicate 1_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 592,735 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF110UUF.bed.gz processed_file_md5 1eebb7b8784b96e794bb31af1a593a89 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF110UUF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF110UUF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF110UUF/@@download/ENCFF110UUF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF110UUF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8cebdcf5befefc738e7055534f00c166 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91469,FactorBook:ENCSR091GVJ;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-01-14,2015-12-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • HepG2 NGENCOVQSMWRTJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCOVQSMWRTJ data_source ENCODE Download track Download number_of_intervals 8,863 bp_covered 4,945,819 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR253OON biological_replicate 1 technical_replicate 1_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 170,661 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF508KUL.bed.gz processed_file_md5 f11f17f1a3d3c493415e1d952d0d502c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF508KUL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF508KUL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF508KUL/@@download/ENCFF508KUL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF508KUL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8b05442dbb9c0707a5714a9c49946717 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE96003,FactorBook:ENCSR253OON;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-14,2016-06-13;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR253OON] [Life stage: Child] [TF ChIP-seq peaks]
ATF1 • WTC11 NGENCPLVBDFPT4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCPLVBDFPT4 data_source ENCODE Download track Download number_of_intervals 1,505 bp_covered 756,667 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR887VJM biological_replicate 1 technical_replicate 1_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 30,840 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF792UEK.bed.gz processed_file_md5 098deae0ef6229d42dd394f8e5f2d8be wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF792UEK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF792UEK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF792UEK/@@download/ENCFF792UEK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF792UEK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 26b844fcb36a13152d11f851c7645312 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231144;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-09-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR887VJM] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • WTC11 NGENCSFPMRVE5P • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCSFPMRVE5P data_source ENCODE Download track Download number_of_intervals 1,425 bp_covered 548,080 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR887VJM biological_replicate 2 technical_replicate 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 28,042 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF320HZF.bed.gz processed_file_md5 05b8b60cefb65ecb5afb5adebff1f099 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF320HZF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF320HZF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF320HZF/@@download/ENCFF320HZF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF320HZF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7874eda8a0c834331c74d92f2509a737 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231144;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-09-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR887VJM] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • K562 NGENCT2PW5BVZ6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCT2PW5BVZ6 data_source ENCODE Download track Download number_of_intervals 43,763 bp_covered 28,818,132 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 835,484 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF141JNT.bed.gz processed_file_md5 b50dad5e0e472637627371e136dc126c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF141JNT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF141JNT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF141JNT/@@download/ENCFF141JNT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF141JNT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d3cc6be1dd71b4f5066ac887589bb4d8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91469,FactorBook:ENCSR091GVJ;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-01-14,2015-12-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ATF1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • K562 NGENCU7SGNWQJG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCU7SGNWQJG data_source ENCODE Download track Download number_of_intervals 31,967 bp_covered 20,421,844 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 2 technical_replicate 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 567,286 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF420DDS.bed.gz processed_file_md5 08ebf8498ce2bd3f3eff15bd926c90b6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF420DDS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF420DDS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF420DDS/@@download/ENCFF420DDS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF420DDS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9f493ef84e14083c8c94be351bbe053a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91469,FactorBook:ENCSR091GVJ;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-01-14,2015-12-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • K562 NGENCUBIN72D3U • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUBIN72D3U data_source ENCODE Download track Download number_of_intervals 2,754 bp_covered 590,326 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 2 technical_replicate 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 50,290 downloaded_date 06/12/2022 release_date 02/04/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF048FKQ.bed.gz processed_file_md5 6a1ea6c913039b504a13fd0f3a053dbd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF048FKQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF048FKQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF048FKQ/@@download/ENCFF048FKQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF048FKQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2a221c8a8712c295d547f83e44e14c64 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR159OCC,GEO:GSE95956;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-14,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR159OCC] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • K562 NGENCUK6ZBOUEJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUK6ZBOUEJ data_source ENCODE Download track Download number_of_intervals 16,430 bp_covered 4,025,031 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 306,057 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF357ISB.bed.gz processed_file_md5 aaf735dc2a42e31a74290675cb194695 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF357ISB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF357ISB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF357ISB/@@download/ENCFF357ISB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF357ISB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f105afcff52bbf918cc7c404d5a9509e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002865,FactorBook:ENCSR000DNZ,GEO:GSM935340;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14,2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ATF1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • HepG2 NGENCV747TZYBA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCV747TZYBA data_source ENCODE Download track Download number_of_intervals 10,063 bp_covered 5,115,881 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR253OON biological_replicate 2 technical_replicate 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 195,289 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF127AQB.bed.gz processed_file_md5 85c2f2762d09138f8f4617fa55446601 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF127AQB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF127AQB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF127AQB/@@download/ENCFF127AQB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF127AQB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 619460b3e6afd6d2bca79e83f573ae74 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=GEO:GSE96003,FactorBook:ENCSR253OON;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-14,2016-06-13;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR253OON] [Life stage: Child] [TF ChIP-seq peaks]
ATF1 • WTC11 NGENCYFGZZLMZW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCYFGZZLMZW data_source ENCODE Download track Download number_of_intervals 3,549 bp_covered 1,589,936 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR887VJM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay TF ChIP-seq file_format bed narrowPeak file_size 71,773 downloaded_date 07/10/2025 release_date 12/19/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF354DFT.bed.gz processed_file_md5 f030b86ee1773cee1eea3110ca9803f4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF354DFT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF354DFT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF354DFT/@@download/ENCFF354DFT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF354DFT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 114bc13505c108c47dc9ec0ec82f5dbd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231144;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2023-01-06,2022-09-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ATF1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR887VJM] [Life stage: Adult] [TF ChIP-seq peaks]
ATF1 • K562 NGFTB2OSE7CPNQ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB2OSE7CPNQ data_source Factorbook Download track Download number_of_intervals 49 bp_covered 980 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,190 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_GACGTCATCDSBSCGCGCCG_filtered.bed.gz processed_file_md5 c3578b9c1ba2f6a122ed313b0a7f9cc1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_GACGTCATCDSBSCGCGCCG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_GACGTCATCDSBSCGCGCCG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_GACGTCATCDSBSCGCGCCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_GACGTCATCDSBSCGCGCCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 74b0aef3320a2e349745df2ff52f2079 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=GACGTCATCDSBSCGCGCCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTB2T74R4KCZ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB2T74R4KCZ data_source Factorbook Download track Download number_of_intervals 1,363 bp_covered 17,719 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 23,296 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_GCGCCGGAAGTGS_sorted.bed.gz processed_file_md5 42c5762f8b132e03ddba242d9caee635 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_GCGCCGGAAGTGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_GCGCCGGAAGTGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_GCGCCGGAAGTGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_GCGCCGGAAGTGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 34970b27c8d11fc2763bfaa2bde85fd3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=GCGCCGGAAGTGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTB6UED72LZR • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB6UED72LZR data_source Factorbook Download track Download number_of_intervals 15,155 bp_covered 151,550 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 159,094 downloaded_date 07/10/2024 release_date 01/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_CACTTCCGGY_sorted.bed.gz processed_file_md5 1e03e902890b1ddcefe69499933aa964 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_CACTTCCGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_CACTTCCGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF627RSK_CACTTCCGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF627RSK_CACTTCCGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a6944b45d73af6fa4a5615858c48559e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF627RSK;ENCODE_bigBed_id=ENCFF817JQF;PMID=34755879;Motif_sequence=CACTTCCGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBA2BWWJDTR • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBA2BWWJDTR data_source Factorbook Download track Download number_of_intervals 12,236 bp_covered 244,720 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 172,669 downloaded_date 07/10/2024 release_date 01/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG_sorted.bed.gz processed_file_md5 b8b885f683df4fb924b97dfa1f248380 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 14a00df175b029a144d6ab86be5ef82f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF627RSK;ENCODE_bigBed_id=ENCFF817JQF;PMID=34755879;Motif_sequence=KRCGTCATCDSBSSGCGCCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBEZHHMG2EL • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBEZHHMG2EL data_source Factorbook Download track Download number_of_intervals 122 bp_covered 2,440 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,328 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF206BGR_RACTACAWYTCCCAGAAKGC_filtered.bed.gz processed_file_md5 6d36761b630eadb4cfba66e11da902ab wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF206BGR_RACTACAWYTCCCAGAAKGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF206BGR_RACTACAWYTCCCAGAAKGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF206BGR_RACTACAWYTCCCAGAAKGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF206BGR_RACTACAWYTCCCAGAAKGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 896bfda7c12bd1ac2d6c390d3203de9e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF206BGR;ENCODE_bigBed_id=ENCFF980NSF;PMID=34755879;Motif_sequence=RACTACAWYTCCCAGAAKGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TFBS]