consolidated • Kidney tubule cell NGEPMV2QQ3IJ3P • EpiMap Enhancers33536621 ChromHMM Kidney tubule cell Enhancer Show metadata Download track Track metadata identifier NGEPMV2QQ3IJ3P data_source EpiMap_Enhancers Download track Download number_of_intervals 133,640 bp_covered 97,091,200 output_type enhancer chromatin states genome_build hg38 cell_type Kidney tubule cell biosample_type Primary cell biosample_term_id CL:1000507 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,243,769 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01102_ENCODE_Enh_hg38.bed.gz processed_file_md5 cb2d6eebee6a668a4a461109c6252535 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01102_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01102_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01102_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01102_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01102_18_CALLS_segments.bed.gz raw_file_md5 436661af65809de60b3653115e07e96a data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=kidney tubule cell female adult (80 years) and male adult (62 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01102;extended_md.donor.ids=ENCDO335XPZ,ENCDO421EJG;extended_md.collated.donors=ENCDO335XPZ,ENCDO421EJG;extended_md.accession=ENCSR175IWT;extended_md.biosample.ids=ENCBS546UCS,ENCBS947UTL;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=80,62;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=CL:1000507;is_hg38_lifted=no system_category Renal life_stage Adult track_name EpiMap_Enhancers Kidney tubule cell ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • CD4+ alpha-beta effector memory cell NGEPMV37PBIELJ • EpiMap Enhancers33536621 ChromHMM CD4+ alpha-beta effector memory cell Enhancer Show metadata Download track Track metadata identifier NGEPMV37PBIELJ data_source EpiMap_Enhancers Download track Download number_of_intervals 82,007 bp_covered 54,117,200 output_type enhancer chromatin states genome_build hg38 cell_type CD4+ alpha-beta effector memory cell biosample_type Primary cell biosample_term_id CL:0000905 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 775,017 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00274_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 672860ae22c3a2948eaac0037374172a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00274_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00274_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00274_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00274_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00274_18_CALLS_segments.bed.gz raw_file_md5 5a5b8e98099671947d02f80f81acf117 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=effector memory CD4+alpha-beta T cell;tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00274;extended_md.donor.ids=ENCDO194EHQ,ENCDO779YRY;extended_md.collated.donors=ENCDO194EHQ,ENCDO779YRY;extended_md.accession=ENCSR368ZJL,ENCSR610IIJ,ENCSR911BCA,ENCSR892HPQ,ENCSR750ZCV,ENCSR291KBJ;extended_md.biosample.ids=ENCBS110SZF,ENCBS934MZY;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers CD4+ alpha-beta effector memory cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Fibroblast NGEPMV3H5ZM5JV • EpiMap Enhancers33536621 ChromHMM Fibroblast Enhancer Show metadata Download track Track metadata identifier NGEPMV3H5ZM5JV data_source EpiMap_Enhancers Download track Download number_of_intervals 186,491 bp_covered 134,819,200 output_type enhancer chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,719,989 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00337_ENCODE_2012_Enh_hg38.bed.gz processed_file_md5 eda62fd7ba2d65b241e1f932f1beaa9c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00337_ENCODE_2012_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00337_ENCODE_2012_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00337_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00337_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00337_18_CALLS_segments.bed.gz raw_file_md5 8a228812651befedfd431842e0fcb092 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=fibroblast of dermis NONE and female adult;tissue_of_origin=Dermis;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00337;extended_md.donor.ids=ENCDO759UVX,ENCDO759UVX,ENCDO267AAA,ENCDO267AAA;extended_md.collated.donors=ENCDO759UVX,ENCDO267AAA,ENCDO267AAA;extended_md.accession=ENCSR000APR,ENCSR000ATG;extended_md.biosample.ids=ENCBS337AAA,ENCBS068KST,ENCBS311WGW,ENCBS337AAA;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown,adult,adult,unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult, Unknown track_name EpiMap_Enhancers Fibroblast ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Muscle NGEPMV3TYSJPGP • EpiMap33536621 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGEPMV3TYSJPGP data_source EpiMap Download track Download number_of_intervals 397,219 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,887,773 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01330_Roadmap_2015_All_hg38.bed.gz processed_file_md5 e4984f7aa03e947b0165272f217d5ea2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01330_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01330_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01330_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01330_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01330_18_CALLS_segments.bed.gz raw_file_md5 89a48acb5d03c1fb8f9ef9310e5f68b2 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle of leg male embryo (97 days);tissue_of_origin=Leg;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01330;extended_md.donor.ids=ENCDO576LXR,ENCDO597UXW;extended_md.collated.donors=ENCDO576LXR,ENCDO597UXW;extended_md.accession=ENCSR033DQS,ENCSR294QCR;extended_md.biosample.ids=ENCBS947JRD,ENCBS143XQJ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=97;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name EpiMap Muscle ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Ectodermal cell NGEPMV42CPHZ7V • EpiMap33536621 ChromHMM Ectodermal cell Chromatin states Show metadata Download track Track metadata identifier NGEPMV42CPHZ7V data_source EpiMap Download track Download number_of_intervals 428,374 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Ectodermal cell biosample_type In vitro differentiated cells biosample_term_id CL:0000221 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,146,414 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00273_Roadmap_2015_All_hg38.bed.gz processed_file_md5 5933bbc87e5abf9f710e64a416295e5c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00273_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00273_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00273_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00273_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00273_18_CALLS_segments.bed.gz raw_file_md5 b52be2a40a68a88135bd0a86a9f561c5 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=ectodermal cell originated from HUES64;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00273;extended_md.donor.ids=ENCDO424FTP;extended_md.collated.donors=ENCDO424FTP;extended_md.accession=ENCSR747HAM,ENCSR366OIQ,ENCSR807LJO,ENCSR690GLT,ENCSR136ZLJ,ENCSR235CEI;extended_md.biosample.ids=ENCBS927LTG,ENCBS678KDE,ENCBS678KDE,ENCBS554MMO,ENCBS398HLX,ENCBS678KDE;extended_md.assay=ChIP-seq;extended_md.life.stage=embryonic;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=CL:0000221;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap Ectodermal cell ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Pancreas NGEPMV4FKKUMWP • EpiMap Enhancers33536621 ChromHMM Pancreas Enhancer Show metadata Download track Track metadata identifier NGEPMV4FKKUMWP data_source EpiMap_Enhancers Download track Download number_of_intervals 148,540 bp_covered 97,799,000 output_type enhancer chromatin states genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,389,924 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01407_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 ba0a866662df4bbc3d40c7dea1c6d781 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01407_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01407_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01407_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01407_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01407_18_CALLS_segments.bed.gz raw_file_md5 c931236b5f3b454173369ae63e4fe91d data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=pancreas male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01407;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR747VED,ENCSR943JOF,ENCSR612BWE,ENCSR035QNZ,ENCSR178JBL,ENCSR449PYI,ENCSR186QKH;extended_md.biosample.ids=ENCBS507RPJ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap_Enhancers Pancreas ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Epithelial cell NGEPMV4MIEPAPB • EpiMap Enhancers33536621 ChromHMM Epithelial cell Enhancer Show metadata Download track Track metadata identifier NGEPMV4MIEPAPB data_source EpiMap_Enhancers Download track Download number_of_intervals 122,791 bp_covered 82,303,600 output_type enhancer chromatin states genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,150,326 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00310_ENCODE_Enh_hg38.bed.gz processed_file_md5 10871b8e7c5a6cc20839d5f5a086f82f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00310_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00310_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00310_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00310_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00310_18_CALLS_segments.bed.gz raw_file_md5 e92053ac2c7d2d7c70bda449d3e224b0 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=epithelial cell of proximal tubule;tissue_of_origin=Proximal tubule;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00310;extended_md.donor.ids=ENCDO103AAA;extended_md.collated.donors=ENCDO103AAA;extended_md.accession=ENCSR000DXF,ENCSR000EPW;extended_md.biosample.ids=ENCBS402ENC,ENCBS166KRI,ENCBS166KRI,ENCBS402ENC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Unknown track_name EpiMap_Enhancers Epithelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Peripheral blood mononuclear cell NGEPMV4SGYTQNV • EpiMap33536621 ChromHMM Peripheral blood mononuclear cell Chromatin states Show metadata Download track Track metadata identifier NGEPMV4SGYTQNV data_source EpiMap Download track Download number_of_intervals 322,037 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,087,193 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01424_Roadmap_2021_All_hg38.bed.gz processed_file_md5 44c6efd1971a0c5ee07582539a25b47e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01424_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01424_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01424_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01424_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01424_18_CALLS_segments.bed.gz raw_file_md5 b5ac20adc27f3dba6a5a6fca84780347 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=peripheral blood mononuclear cell male adult (39 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01424;extended_md.donor.ids=ENCDO424KSR;extended_md.collated.donors=ENCDO424KSR;extended_md.accession=ENCSR553XBX,ENCSR258ORJ,ENCSR105EMQ,ENCSR275EAG,ENCSR692DOM,ENCSR420EWO;extended_md.biosample.ids=ENCBS770TLM;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=39;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Peripheral blood mononuclear cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • HS-27A NGEPMV4ZFPPZIA • EpiMap33536621 ChromHMM HS-27A Chromatin states Show metadata Download track Track metadata identifier NGEPMV4ZFPPZIA data_source EpiMap Download track Download number_of_intervals 474,599 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type HS-27A biosample_type Cell line biosample_term_id EFO:0005283 tissue_category Bone encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,628,972 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00704_ENCODE_All_hg38.bed.gz processed_file_md5 a668e21ecff7a4b5c3d056724e6b1985 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00704_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00704_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00704_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00704_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00704_18_CALLS_segments.bed.gz raw_file_md5 982b21d6e062693561257b5020e29828 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=HS-27A;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00704;extended_md.donor.ids=ENCDO000AAT;extended_md.collated.donors=ENCDO000AAT;extended_md.accession=ENCSR000EMF;extended_md.biosample.ids=ENCBS009ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005283;is_hg38_lifted=no system_category Skeletal life_stage Adult track_name EpiMap HS-27A ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • CD14+ monocyte NGEPMV5EO5KRAX • EpiMap Enhancers33536621 ChromHMM CD14+ monocyte Enhancer Show metadata Download track Track metadata identifier NGEPMV5EO5KRAX data_source EpiMap_Enhancers Download track Download number_of_intervals 177,776 bp_covered 132,533,200 output_type enhancer chromatin states genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,646,728 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00178_ENCODE_2012_Enh_hg38.bed.gz processed_file_md5 4c616b1dc87583057181817919c55103 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00178_ENCODE_2012_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00178_ENCODE_2012_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00178_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00178_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00178_18_CALLS_segments.bed.gz raw_file_md5 42f64621e8aa8b03706732fe2868035e data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=CD14+ monocyte female;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00178;extended_md.donor.ids=ENCDO266AAA,ENCDO265AAA,ENCDO265AAA;extended_md.collated.donors=ENCDO266AAA,ENCDO265AAA,ENCDO265AAA;extended_md.accession=ENCSR000ASM,ENCSR000ASN,ENCSR000EPK,ENCSR000ASO,ENCSR000ASP,ENCSR000ASQ,ENCSR000DWL,ENCSR000ELE,ENCSR000ATE,ENCSR000DWM,ENCSR000ATF,ENCSR000ASI,ENCSR000ASJ,ENCSR000ASK,ENCSR000ASL;extended_md.biosample.ids=ENCBS629ENC,ENCBS628ENC,ENCBS609ENC,ENCBS865RXK,ENCBS477CHZ,ENCBS865RXK,ENCBS188BKX,ENCBS188BKX;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap_Enhancers CD14+ monocyte ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Renal pelvis NGEPMV5SR6ARCW • EpiMap33536621 ChromHMM Renal pelvis Chromatin states Show metadata Download track Track metadata identifier NGEPMV5SR6ARCW data_source EpiMap Download track Download number_of_intervals 367,270 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,601,626 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01493_Roadmap_2021_All_hg38.bed.gz processed_file_md5 e0db752ae60d4248040084111ac3cc7a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01493_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01493_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01493_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01493_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01493_18_CALLS_segments.bed.gz raw_file_md5 e4a7577e31a08a973d6926e09f458c78 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=renal pelvis female embryo (103 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01493;extended_md.donor.ids=ENCDO380HQH;extended_md.collated.donors=ENCDO380HQH;extended_md.accession=ENCSR554WUJ;extended_md.biosample.ids=ENCBS166PBJ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=103;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal pelvis ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • GM03348 NGEPMV5YROFVMW • EpiMap33536621 ChromHMM GM03348 Chromatin states Show metadata Download track Track metadata identifier NGEPMV5YROFVMW data_source EpiMap Download track Download number_of_intervals 529,234 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type GM03348 biosample_type Cell line biosample_term_id CLO:0016536 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,174,614 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00390_ENCODE_All_hg38.bed.gz processed_file_md5 b57cd1f66513d727775eec54f1ac2afe wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00390_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00390_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00390_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00390_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00390_18_CALLS_segments.bed.gz raw_file_md5 d6d0af2875a949ac5d9889d469650f0b data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=GM03348;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00390;extended_md.donor.ids=ENCDO186AAA;extended_md.collated.donors=ENCDO186AAA;extended_md.accession=ENCSR000EIS;extended_md.biosample.ids=ENCBS285AAA;extended_md.assay=DNase-seq;extended_md.life.stage=child;extended_md.age=10;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Child track_name EpiMap GM03348 ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • T-helper 17 cell NGEPMV6IPHWITJ • EpiMap33536621 ChromHMM T-helper 17 cell Chromatin states Show metadata Download track Track metadata identifier NGEPMV6IPHWITJ data_source EpiMap Download track Download number_of_intervals 367,769 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type T-helper 17 cell biosample_type Primary cell biosample_term_id CL:0000899 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,605,640 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01694_Roadmap_2021_All_hg38.bed.gz processed_file_md5 b28beddc7783571ab624c79ce54da346 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01694_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01694_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01694_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01694_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01694_18_CALLS_segments.bed.gz raw_file_md5 c3c877522721d4229b6f072dcbd1f46f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=T-helper 17 cell originated from blood cell;tissue_of_origin=Blood;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01694;extended_md.donor.ids=ENCDO966YSM;extended_md.collated.donors=ENCDO966YSM;extended_md.accession=ENCSR678RCY;extended_md.biosample.ids=ENCBS918TIU;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap T-helper 17 cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • RKO NGEPMV7M5WQK7N • EpiMap33536621 ChromHMM RKO Chromatin states Show metadata Download track Track metadata identifier NGEPMV7M5WQK7N data_source EpiMap Download track Download number_of_intervals 383,338 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type RKO biosample_type Cell line biosample_term_id EFO:0001232 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,762,482 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01535_ENCODE_All_hg38.bed.gz processed_file_md5 da65277b99c2e06dcb17feed8d168364 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01535_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01535_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01535_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01535_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01535_18_CALLS_segments.bed.gz raw_file_md5 37a06001e38cd28fdf40ab703a858a94 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=RKO;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01535;extended_md.donor.ids=ENCDO035MMY;extended_md.collated.donors=ENCDO035MMY;extended_md.accession=ENCSR429RHR;extended_md.biosample.ids=ENCBS954LTA,ENCBS740UAH;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0001232;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name EpiMap RKO ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Uterus NGEPMV7WQF33D7 • EpiMap33536621 ChromHMM Uterus Chromatin states Show metadata Download track Track metadata identifier NGEPMV7WQF33D7 data_source EpiMap Download track Download number_of_intervals 293,331 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,850,913 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01884_ENCODE_All_hg38.bed.gz processed_file_md5 27de9473fcd5d5adae0a983e39e68c50 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01884_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01884_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01884_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01884_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01884_18_CALLS_segments.bed.gz raw_file_md5 ce6a8b19b7fdf0c6c31d281ea13f5e73 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=uterus female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01884;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR237WJY,ENCSR249INE;extended_md.biosample.ids=ENCBS310EYM,ENCBS754FVJ,ENCBS469FLQ;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Uterus ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • HuH-7.5 NGEPMVA6DDQXA3 • EpiMap33536621 ChromHMM HuH-7.5 Chromatin states Show metadata Download track Track metadata identifier NGEPMVA6DDQXA3 data_source EpiMap Download track Download number_of_intervals 563,306 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type HuH-7.5 biosample_type Cell line biosample_term_id EFO:0005704 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,467,634 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00719_ENCODE_All_hg38.bed.gz processed_file_md5 8e40f5d34475b991abf8240a1aec833c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00719_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00719_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00719_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00719_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00719_18_CALLS_segments.bed.gz raw_file_md5 9793e16764c38035e727b332a1162bde data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=HuH-7.5;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00719;extended_md.donor.ids=ENCDO000ACU;extended_md.collated.donors=ENCDO000ACU;extended_md.accession=ENCSR000EKE;extended_md.biosample.ids=ENCBS227AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=57;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap HuH-7.5 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Large intestine NGEPMVBBYK4CLT • EpiMap Enhancers33536621 ChromHMM Large intestine Enhancer Show metadata Download track Track metadata identifier NGEPMVBBYK4CLT data_source EpiMap_Enhancers Download track Download number_of_intervals 85,036 bp_covered 56,184,000 output_type enhancer chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 804,742 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01111_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 60cb59c486904e8b0d6166de4b6a9956 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01111_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01111_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01111_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01111_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01111_18_CALLS_segments.bed.gz raw_file_md5 4293e4be3f1729dac64afaf388cb2024 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=large intestine female embryo (107 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01111;extended_md.donor.ids=ENCDO607LOS;extended_md.collated.donors=ENCDO607LOS;extended_md.accession=ENCSR563XRP;extended_md.biosample.ids=ENCBS746BPC;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=107;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Large intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Mucosa NGEPMVCCVWKXXA • EpiMap33536621 ChromHMM Mucosa Chromatin states Show metadata Download track Track metadata identifier NGEPMVCCVWKXXA data_source EpiMap Download track Download number_of_intervals 537,228 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Mucosa biosample_type Tissue biosample_term_id UBERON:0000344 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,217,111 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00271_Roadmap_2015_All_hg38.bed.gz processed_file_md5 deefd29bdf8f0f79befd1751585a3675 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00271_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00271_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00271_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00271_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00271_18_CALLS_segments.bed.gz raw_file_md5 a5fef959a3193b032513c3cd38803cb1 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=duodenal mucosa male adult (76 years);tissue_of_origin=Duodenum;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00271;extended_md.donor.ids=ENCDO889KES;extended_md.collated.donors=ENCDO889KES;extended_md.accession=ENCSR245YZT,ENCSR485FST,ENCSR149XIH,ENCSR203BQB,ENCSR645NLL,ENCSR246ARY;extended_md.biosample.ids=ENCBS500NMQ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=76;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Mucosa ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Renal pelvis NGEPMVF7IV64GQ • EpiMap Enhancers33536621 ChromHMM Renal pelvis Enhancer Show metadata Download track Track metadata identifier NGEPMVF7IV64GQ data_source EpiMap_Enhancers Download track Download number_of_intervals 84,121 bp_covered 57,405,400 output_type enhancer chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 803,391 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01501_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 371c67a87f7db2c768019130d4feac34 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01501_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01501_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01501_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01501_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01501_18_CALLS_segments.bed.gz raw_file_md5 58017076790366af6639ad88ca094c75 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=renal pelvis male embryo (97 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01501;extended_md.donor.ids=ENCDO576LXR;extended_md.collated.donors=ENCDO576LXR;extended_md.accession=ENCSR364TKL;extended_md.biosample.ids=ENCBS785KTZ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=97;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Renal pelvis ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Muscle layer NGEPMVGZENIXTI • EpiMap33536621 ChromHMM Muscle layer Chromatin states Show metadata Download track Track metadata identifier NGEPMVGZENIXTI data_source EpiMap Download track Download number_of_intervals 342,922 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Muscle layer biosample_type Tissue biosample_term_id UBERON:0006660 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,336,791 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01285_Roadmap_2015_All_hg38.bed.gz processed_file_md5 cf3949a4c433e89409e5591b78cf141d wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01285_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01285_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01285_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01285_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01285_18_CALLS_segments.bed.gz raw_file_md5 1249ab88a55b47dbeeebfb71323cfd18 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=muscle layer of colon female adult (56 years);tissue_of_origin=Colon;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01285;extended_md.donor.ids=ENCDO266YSK;extended_md.collated.donors=ENCDO266YSK;extended_md.accession=ENCSR576YAD,ENCSR004EKY,ENCSR170VSJ,ENCSR858LJY,ENCSR011GVU;extended_md.biosample.ids=ENCBS179LVQ;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=56;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Muscle layer ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]