consolidated • K562 NGEPMWOY57HKDL • EpiMap33536621 ChromHMM K562 Chromatin states Show metadata Download track Track metadata identifier NGEPMWOY57HKDL data_source EpiMap Download track Download number_of_intervals 488,953 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,784,181 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01056_ENCODE_All_hg38.bed.gz processed_file_md5 c462b790c2971a36a331b05c9b0da82f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01056_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01056_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01056_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01056_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01056_18_CALLS_segments.bed.gz raw_file_md5 4927688582d0133e9801cb42fb874bf8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=K562 treated with 0.05% dimethyl sulfoxide for 72 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01056;extended_md.donor.ids=ENCDO000AAD;extended_md.collated.donors=ENCDO000AAD;extended_md.accession=ENCSR000EKO;extended_md.biosample.ids=ENCBS779AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap K562 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Keratinocyte NGEPMWP7W3TL64 • EpiMap33536621 ChromHMM Keratinocyte Chromatin states Show metadata Download track Track metadata identifier NGEPMWP7W3TL64 data_source EpiMap Download track Download number_of_intervals 374,345 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,621,976 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00355_GGR_All_hg38.bed.gz processed_file_md5 744b35061823d35ca1273189b1576c69 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00355_GGR_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00355_GGR_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00355_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00355_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00355_18_CALLS_segments.bed.gz raw_file_md5 5cc8fdba5909353628ae7d3cbc87972d data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=foreskin keratinocyte male newborn (2-4 days);tissue_of_origin=Foreskin;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00355;extended_md.donor.ids=ENCDO615NVN,ENCDO005EGE,ENCDO005EGE,ENCDO615NVN;extended_md.collated.donors=ENCDO005EGE,ENCDO615NVN,ENCDO615NVN;extended_md.accession=ENCSR621FNM,ENCSR356KRQ,ENCSR487KVV,ENCSR736ZEG;extended_md.biosample.ids=ENCBS666IIR,ENCBS666IIR,ENCBS538XZS,ENCBS538XZS;extended_md.assay=ChIP-seq,ATAC-seq;extended_md.life.stage=newborn;extended_md.age=45326;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name EpiMap Keratinocyte ChromHMM consolidated chromatin states (bed9) [Life stage: Newborn] [Chromatin states]
consolidated • Tongue NGEPMWRDVJJC6E • EpiMap33536621 ChromHMM Tongue Chromatin states Show metadata Download track Track metadata identifier NGEPMWRDVJJC6E data_source EpiMap Download track Download number_of_intervals 362,656 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Tongue biosample_type Tissue biosample_term_id UBERON:0001723 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,557,753 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01845_ENCODE_All_hg38.bed.gz processed_file_md5 80a7d32312f74afe2d9cf6d6ec61df99 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01845_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01845_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01845_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01845_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01845_18_CALLS_segments.bed.gz raw_file_md5 b5bbf32e1293514beb53bd4aa08eb247 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=tongue female embryo (59 days) and female embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01845;extended_md.donor.ids=ENCDO294EUZ,ENCDO237NAG;extended_md.collated.donors=ENCDO294EUZ,ENCDO237NAG;extended_md.accession=ENCSR759UNY;extended_md.biosample.ids=ENCBS267KML,ENCBS321GUH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=59,76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Tongue ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Peripheral blood mononuclear cell NGEPMWSGRXN7VM • EpiMap33536621 ChromHMM Peripheral blood mononuclear cell Chromatin states Show metadata Download track Track metadata identifier NGEPMWSGRXN7VM data_source EpiMap Download track Download number_of_intervals 312,789 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Peripheral blood mononuclear cell biosample_type Primary cell biosample_term_id CL:2000001 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,022,488 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01419_Roadmap_2015_All_hg38.bed.gz processed_file_md5 33ffff79fc894f8ebd6594e4612cb45c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01419_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01419_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01419_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01419_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01419_18_CALLS_segments.bed.gz raw_file_md5 dad647ce268bbf3ba3d8c163de639968 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=peripheral blood mononuclear cell female adult (28 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01419;extended_md.donor.ids=ENCDO839WKQ;extended_md.collated.donors=ENCDO839WKQ;extended_md.accession=ENCSR206JRX,ENCSR605OYC,ENCSR156XNC,ENCSR992ODD,ENCSR390SFH;extended_md.biosample.ids=ENCBS462YIM,ENCBS287UWO;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=28;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Peripheral blood mononuclear cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Left ventricle NGEPMWUCHBOHF3 • EpiMap Enhancers33536621 ChromHMM Left ventricle Enhancer Show metadata Download track Track metadata identifier NGEPMWUCHBOHF3 data_source EpiMap_Enhancers Download track Download number_of_intervals 67,593 bp_covered 90,984,600 output_type enhancer chromatin states genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 653,951 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00507_ENCODE_Enh_hg38.bed.gz processed_file_md5 0d269292f71ec3d20df56b3d7bbf3636 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00507_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00507_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00507_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00507_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00507_18_CALLS_segments.bed.gz raw_file_md5 c725de6a864828f37b40cf9b83efdfa2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=heart left ventricle female adult (53 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00507;extended_md.donor.ids=ENCDO793LXB;extended_md.collated.donors=ENCDO793LXB;extended_md.accession=ENCSR901SIL,ENCSR500ZGF,ENCSR438QZN,ENCSR851EBF,ENCSR854OXF,ENCSR000XAA,ENCSR988JLN,ENCSR070CMW;extended_md.biosample.ids=ENCBS106FXL,ENCBS260UTX,ENCBS861XCF;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=53;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers Left ventricle ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Renal pelvis NGEPMWUMWFZCST • EpiMap33536621 ChromHMM Renal pelvis Chromatin states Show metadata Download track Track metadata identifier NGEPMWUMWFZCST data_source EpiMap Download track Download number_of_intervals 381,945 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Renal pelvis biosample_type Tissue biosample_term_id UBERON:0001224 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,739,807 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01499_Roadmap_2021_All_hg38.bed.gz processed_file_md5 20288597603b622cbd78d30c58953965 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01499_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01499_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01499_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01499_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01499_18_CALLS_segments.bed.gz raw_file_md5 096fc4bc41ce32dcf2c6c775f4dc5040 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=renal pelvis male embryo (127 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01499;extended_md.donor.ids=ENCDO859GXV;extended_md.collated.donors=ENCDO859GXV;extended_md.accession=ENCSR301RCD;extended_md.biosample.ids=ENCBS266YGB;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=127;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Renal pelvis ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Hematopoietic multipotent progenitor cell NGEPMWVFCIPHCZ • EpiMap33536621 ChromHMM Hematopoietic multipotent progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMWVFCIPHCZ data_source EpiMap Download track Download number_of_intervals 524,768 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Hematopoietic multipotent progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000837 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 5,123,937 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00543_Roadmap_2021_All_hg38.bed.gz processed_file_md5 67678cb31efeaea28e5b545c8a9a7877 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00543_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00543_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00543_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00543_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00543_18_CALLS_segments.bed.gz raw_file_md5 69ee32871896b0e7ad4ccc1a0f6119ce data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=hematopoietic multipotent progenitor cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00543;extended_md.donor.ids=ENCDO579CCQ,ENCDO937OUY,ENCDO116AAA;extended_md.collated.donors=ENCDO937OUY,ENCDO579CCQ,ENCDO116AAA;extended_md.accession=ENCSR098PTC,ENCSR328UMC,ENCSR000EMK;extended_md.biosample.ids=ENCBS736SRW,ENCBS107WLD,ENCBS485ENC,ENCBS374YBC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown,adult;extended_md.age=unknown,25,34;extended_md.age.units=NR,year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult, Unknown track_name EpiMap Hematopoietic multipotent progenitor cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Kidney NGEPMWVHHVMH7T • EpiMap Enhancers33536621 ChromHMM Kidney Enhancer Show metadata Download track Track metadata identifier NGEPMWVHHVMH7T data_source EpiMap_Enhancers Download track Download number_of_intervals 75,947 bp_covered 52,236,200 output_type enhancer chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 718,704 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01078_ENCODE_Enh_hg38.bed.gz processed_file_md5 96948a5118287be0127b351a59f089f8 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01078_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01078_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01078_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01078_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01078_18_CALLS_segments.bed.gz raw_file_md5 270741ac9bcbb4e32bb4e79e8bf68f12 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=kidney embryo (59 days) and female embryo (59 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01078;extended_md.donor.ids=ENCDO163CLX,ENCDO065EIP;extended_md.collated.donors=ENCDO163CLX,ENCDO065EIP;extended_md.accession=ENCSR792ZXA;extended_md.biosample.ids=ENCBS133SJG,ENCBS536DBJ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=59;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap_Enhancers Kidney ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • G-401 NGEPMWWLCNLE6S • EpiMap33536621 ChromHMM G-401 Chromatin states Show metadata Download track Track metadata identifier NGEPMWWLCNLE6S data_source EpiMap Download track Download number_of_intervals 365,977 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type G-401 biosample_type Cell line biosample_term_id EFO:0002179 tissue_category Urinary encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,586,151 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00372_ENCODE_All_hg38.bed.gz processed_file_md5 9089426b4d7717d11e5fbfdf47bbf224 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00372_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00372_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00372_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00372_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00372_18_CALLS_segments.bed.gz raw_file_md5 7cc648d6cd1eccfb45f49ab136e3433a data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=G401;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00372;extended_md.donor.ids=ENCDO572LRN;extended_md.collated.donors=ENCDO572LRN;extended_md.accession=ENCSR269SIA;extended_md.biosample.ids=ENCBS659PBH,ENCBS062JBT;extended_md.assay=DNase-seq;extended_md.life.stage=child;extended_md.age=3;extended_md.age.units=month;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Child track_name EpiMap G-401 ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • Pons NGEPMWXSYLSNCQ • EpiMap Enhancers33536621 ChromHMM Pons Enhancer Show metadata Download track Track metadata identifier NGEPMWXSYLSNCQ data_source EpiMap_Enhancers Download track Download number_of_intervals 73,769 bp_covered 49,756,000 output_type enhancer chromatin states genome_build hg38 cell_type Pons biosample_type Tissue biosample_term_id UBERON:0000988 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 707,159 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01451_ENCODE_Enh_hg38.bed.gz processed_file_md5 4ae1b8382fa70480ade68d7301867678 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01451_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01451_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01451_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01451_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01451_18_CALLS_segments.bed.gz raw_file_md5 44257638b5cbb4eec8c89053549e8eca data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=pons male adult (78 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01451;extended_md.donor.ids=ENCDO317XRR;extended_md.collated.donors=ENCDO317XRR;extended_md.accession=ENCSR829MXU;extended_md.biosample.ids=ENCBS465GRS;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=78;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap_Enhancers Pons ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Smooth muscle tissue NGEPMWXYTPR634 • EpiMap33536621 ChromHMM Smooth muscle tissue Chromatin states Show metadata Download track Track metadata identifier NGEPMWXYTPR634 data_source EpiMap Download track Download number_of_intervals 481,249 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Smooth muscle tissue biosample_type Tissue biosample_term_id UBERON:0001135 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,704,430 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01660_Roadmap_2021_All_hg38.bed.gz processed_file_md5 07ee289dfcf9c19d249a05ed5dd36ad2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01660_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01660_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01660_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01660_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01660_18_CALLS_segments.bed.gz raw_file_md5 ce9a1e3faf1524f28fd96f1a22e6b628 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=stomach smooth muscle male adult (59 years);tissue_of_origin=Stomach;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01660;extended_md.donor.ids=ENCDO884GGM;extended_md.collated.donors=ENCDO884GGM;extended_md.accession=ENCSR168PQI,ENCSR217CEY,ENCSR083ZUY,ENCSR036AQX,ENCSR339PLH;extended_md.biosample.ids=ENCBS554CVR;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=59;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Smooth muscle tissue ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Placenta NGEPMWYJXZAKPY • EpiMap Enhancers33536621 ChromHMM Placenta Enhancer Show metadata Download track Track metadata identifier NGEPMWYJXZAKPY data_source EpiMap_Enhancers Download track Download number_of_intervals 84,765 bp_covered 63,829,000 output_type enhancer chromatin states genome_build hg38 cell_type Placenta biosample_type Tissue biosample_term_id UBERON:0001987 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 793,899 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01430_ENCODE_Enh_hg38.bed.gz processed_file_md5 d56600018f79e557eef9dfb82c869455 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01430_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01430_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01430_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01430_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01430_18_CALLS_segments.bed.gz raw_file_md5 c2001518d3ba781391c2e05642c12332 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=placenta embryo (102 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01430;extended_md.donor.ids=ENCDO091OEF;extended_md.collated.donors=ENCDO091OEF;extended_md.accession=ENCSR552RKI;extended_md.biosample.ids=ENCBS565KNL;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=102;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Placental life_stage Embryonic track_name EpiMap_Enhancers Placenta ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • GM04504 NGEPMWYQPZ5UYN • EpiMap Enhancers33536621 ChromHMM GM04504 Enhancer Show metadata Download track Track metadata identifier NGEPMWYQPZ5UYN data_source EpiMap_Enhancers Download track Download number_of_intervals 157,884 bp_covered 105,313,600 output_type enhancer chromatin states genome_build hg38 cell_type GM04504 biosample_type Cell line biosample_term_id CLO:0018812 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,461,954 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00394_ENCODE_Enh_hg38.bed.gz processed_file_md5 9edfc9dc1f29c89503e6233f57a83bae wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00394_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00394_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00394_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00394_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00394_18_CALLS_segments.bed.gz raw_file_md5 6a886fdb411c895624bbb8cd43abec40 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=GM04504;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00394;extended_md.donor.ids=ENCDO000AAJ;extended_md.collated.donors=ENCDO000AAJ;extended_md.accession=ENCSR000EMP;extended_md.biosample.ids=ENCBS388KHM,ENCBS016ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=31;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name EpiMap_Enhancers GM04504 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • SK-N-DZ NGEPMWYTWPBUYD • EpiMap33536621 ChromHMM SK-N-DZ Chromatin states Show metadata Download track Track metadata identifier NGEPMWYTWPBUYD data_source EpiMap Download track Download number_of_intervals 362,112 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type SK-N-DZ biosample_type Cell line biosample_term_id EFO:0005721 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,556,665 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01554_ENCODE_All_hg38.bed.gz processed_file_md5 6015d1a998e579714a7b84cdc64869c5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01554_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01554_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01554_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01554_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01554_18_CALLS_segments.bed.gz raw_file_md5 b9d392ab6d137abadcdf4ec2f68de66c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=SK-N-DZ;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01554;extended_md.donor.ids=ENCDO340AAA;extended_md.collated.donors=ENCDO340AAA;extended_md.accession=ENCSR946MVP;extended_md.biosample.ids=ENCBS478IFE,ENCBS439FDS;extended_md.assay=DNase-seq;extended_md.life.stage=child;extended_md.age=2;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0005721;is_hg38_lifted=no system_category Nervous life_stage Child track_name EpiMap SK-N-DZ ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • Frontal cortex NGEPMWZ4YFLCZX • EpiMap33536621 ChromHMM Frontal cortex Chromatin states Show metadata Download track Track metadata identifier NGEPMWZ4YFLCZX data_source EpiMap Download track Download number_of_intervals 478,352 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Frontal cortex biosample_type Tissue biosample_term_id UBERON:0001870 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,674,454 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00369_ENCODE_All_hg38.bed.gz processed_file_md5 42e70ca6a65d6aa7b2e2054973d274ca wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00369_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00369_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00369_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00369_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00369_18_CALLS_segments.bed.gz raw_file_md5 1309ff15afc348ac1a69e9fbf690acd6 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=frontal cortex female adult (67 years) and female adult (80 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00369;extended_md.donor.ids=ENCDO312AAA,ENCDO311AAA;extended_md.collated.donors=ENCDO312AAA,ENCDO311AAA;extended_md.accession=ENCSR000EIY;extended_md.biosample.ids=ENCBS129AAA,ENCBS128AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=67,80;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0001870;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Frontal cortex ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Endothelial cell NGEPMWZC3H3PC2 • EpiMap33536621 ChromHMM Endothelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMWZC3H3PC2 data_source EpiMap Download track Download number_of_intervals 448,312 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Blood Vessel encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,375,393 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00258_ENCODE_All_hg38.bed.gz processed_file_md5 138124df81e70099aa0457ade1fa7c51 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00258_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00258_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00258_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00258_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00258_18_CALLS_segments.bed.gz raw_file_md5 de4915e970b197b86833e0034a9723b2 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=dermis blood vessel endothelial cell female adult;tissue_of_origin=Dermis blood vessel;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00258;extended_md.donor.ids=ENCDO239AAA,ENCDO240AAA;extended_md.collated.donors=ENCDO240AAA,ENCDO239AAA;extended_md.accession=ENCSR000ENX,ENCSR000ENY;extended_md.biosample.ids=ENCBS835GOB,ENCBS439XPX,ENCBS312AAA,ENCBS313AAA;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Endothelial cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Gastrocnemius medialis NGEPMWZK3AK7AN • EpiMap33536621 ChromHMM Gastrocnemius medialis Chromatin states Show metadata Download track Track metadata identifier NGEPMWZK3AK7AN data_source EpiMap Download track Download number_of_intervals 448,450 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,336,729 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00379_ENCODE_All_hg38.bed.gz processed_file_md5 991439f7017cd70d89866728105468ca wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00379_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00379_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00379_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00379_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00379_18_CALLS_segments.bed.gz raw_file_md5 b22ce172a32ebabf907a69dcd1d3fd54 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=gastrocnemius medialis male adult (54 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00379;extended_md.donor.ids=ENCDO451RUA;extended_md.collated.donors=ENCDO451RUA;extended_md.accession=ENCSR423LXQ,ENCSR697RIW,ENCSR972ETR,ENCSR948YYZ,ENCSR171ETY,ENCSR161HZJ,ENCSR105YNJ,ENCSR308HPZ;extended_md.biosample.ids=ENCBS291EBC,ENCBS693QTT,ENCBS921WWM;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=54;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name EpiMap Gastrocnemius medialis ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Lung NGEPMX2AYSCK7E • EpiMap Enhancers33536621 ChromHMM Lung Enhancer Show metadata Download track Track metadata identifier NGEPMX2AYSCK7E data_source EpiMap_Enhancers Download track Download number_of_intervals 195,784 bp_covered 155,302,200 output_type enhancer chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,816,572 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01197_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 ee0da019deeddf5f13d7a8dd20899a7e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01197_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01197_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01197_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01197_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01197_18_CALLS_segments.bed.gz raw_file_md5 dc093d8970cae47bfb21105e904fb254 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=lung female embryo (85 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01197;extended_md.donor.ids=ENCDO316SVQ;extended_md.collated.donors=ENCDO316SVQ;extended_md.accession=ENCSR953XVZ,ENCSR322BLC,ENCSR141VGA;extended_md.biosample.ids=ENCBS191SRJ,ENCBS936JAK,ENCBS324OQC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=85;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap_Enhancers Lung ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • EH NGEPMX2FNDQNSZ • EpiMap Enhancers33536621 ChromHMM EH Enhancer Show metadata Download track Track metadata identifier NGEPMX2FNDQNSZ data_source EpiMap_Enhancers Download track Download number_of_intervals 155,631 bp_covered 104,538,600 output_type enhancer chromatin states genome_build hg38 cell_type EH biosample_type Cell line biosample_term_id EFO:0007748 tissue_category Connective Tissue encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,439,915 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00275_ENCODE_Enh_hg38.bed.gz processed_file_md5 48419a6dec9310851768463748e46743 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00275_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00275_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00275_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00275_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00275_18_CALLS_segments.bed.gz raw_file_md5 4b19b214c1ec524e1f3990beecca9e34 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=EH;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00275;extended_md.donor.ids=ENCDO000AAG;extended_md.collated.donors=ENCDO000AAG;extended_md.accession=ENCSR548MMD;extended_md.biosample.ids=ENCBS070WLP,ENCBS683XYV;extended_md.assay=DNase-seq;extended_md.life.stage=newborn;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007748;is_hg38_lifted=no system_category Skeletal life_stage Newborn track_name EpiMap_Enhancers EH ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Newborn] [Enhancer]
consolidated • Endothelial cell NGEPMX2PLMYUKB • EpiMap33536621 ChromHMM Endothelial cell Chromatin states Show metadata Download track Track metadata identifier NGEPMX2PLMYUKB data_source EpiMap Download track Download number_of_intervals 451,410 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,402,535 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00387_ENCODE_All_hg38.bed.gz processed_file_md5 9ba925a4c387334630c53af2ff20e6c5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00387_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00387_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00387_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00387_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00387_18_CALLS_segments.bed.gz raw_file_md5 0f346edf1a33e91ab80cf962e028963f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=glomerular endothelial cell;tissue_of_origin=Glomerular;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00387;extended_md.donor.ids=ENCDO248AAA;extended_md.collated.donors=ENCDO248AAA;extended_md.accession=ENCSR000EOM;extended_md.biosample.ids=ENCBS755UWJ,ENCBS324AAA;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Unknown track_name EpiMap Endothelial cell ChromHMM consolidated chromatin states (bed9) [Chromatin states]