ATF1 • K562 NGFTBF4QPXPTJK • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBF4QPXPTJK data_source Factorbook Download track Download number_of_intervals 1,670 bp_covered 33,400 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 33,929 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_RACTACAWYTCCCAGAAKGC_sorted.bed.gz processed_file_md5 e14cde5096f70b00a4ed8d02c88e0ba4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_RACTACAWYTCCCAGAAKGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_RACTACAWYTCCCAGAAKGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF206BGR_RACTACAWYTCCCAGAAKGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF206BGR_RACTACAWYTCCCAGAAKGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 896bfda7c12bd1ac2d6c390d3203de9e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF206BGR;ENCODE_bigBed_id=ENCFF980NSF;PMID=34755879;Motif_sequence=RACTACAWYTCCCAGAAKGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBFRT5E6YFT • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBFRT5E6YFT data_source Factorbook Download track Download number_of_intervals 1 bp_covered 20 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 351 downloaded_date 07/10/2024 release_date 01/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG_filtered.bed.gz processed_file_md5 b148da419ac22782d752e8b051caf3d3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF627RSK_KRCGTCATCDSBSSGCGCCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 14a00df175b029a144d6ab86be5ef82f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF627RSK;ENCODE_bigBed_id=ENCFF817JQF;PMID=34755879;Motif_sequence=KRCGTCATCDSBSSGCGCCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBGI3QSXGXE • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBGI3QSXGXE data_source Factorbook Download track Download number_of_intervals 485 bp_covered 10,185 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 10,957 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA_sorted.bed.gz processed_file_md5 a40d5191a273ee3c893d47145099bb8c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c5944744ab5532ed66e18bf80c1f355a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=RGCGCTGTCCAYGGTGCTGAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBIAGPNBGC7 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBIAGPNBGC7 data_source Factorbook Download track Download number_of_intervals 14,232 bp_covered 142,320 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 122,151 downloaded_date 07/10/2024 release_date 01/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_ATGACGTCAC_sorted.bed.gz processed_file_md5 1b6690ddfe8348c90959f26a988c35b4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_ATGACGTCAC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_ATGACGTCAC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF627RSK_ATGACGTCAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF627RSK_ATGACGTCAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bda476f8377ff268c4b501ea78d9146c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF627RSK;ENCODE_bigBed_id=ENCFF817JQF;PMID=34755879;Motif_sequence=ATGACGTCAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBIC4IONU43 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBIC4IONU43 data_source Factorbook Download track Download number_of_intervals 2,097 bp_covered 25,164 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 31,079 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_YGRTGACGTCAB_sorted.bed.gz processed_file_md5 94ce35826c34545386498c80430c7aeb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_YGRTGACGTCAB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_YGRTGACGTCAB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_YGRTGACGTCAB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_YGRTGACGTCAB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5c8e8d8d3a75168b4f5b9bbd731f8792 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=YGRTGACGTCAB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBIEHUXUA27 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBIEHUXUA27 data_source Factorbook Download track Download number_of_intervals 11 bp_covered 286 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 560 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT_filtered.bed.gz processed_file_md5 cdd8312666269c975c833fcd65acb070 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 96891904ab840623cc8dc07c0d1c5c24 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=TCGSCGACRCMATAGMGSYGGGCCTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBJCDFXAWXG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBJCDFXAWXG data_source Factorbook Download track Download number_of_intervals 4,014 bp_covered 44,154 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 58,941 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_RCCGGAAGTGV_sorted.bed.gz processed_file_md5 811728326b2c267087b9381426da5f16 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_RCCGGAAGTGV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_RCCGGAAGTGV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF206BGR_RCCGGAAGTGV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF206BGR_RCCGGAAGTGV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7db79ae276b52504c473a952ec009604 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF206BGR;ENCODE_bigBed_id=ENCFF980NSF;PMID=34755879;Motif_sequence=RCCGGAAGTGV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBLPO4TONL3 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBLPO4TONL3 data_source Factorbook Download track Download number_of_intervals 15,593 bp_covered 233,895 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR091GVJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 192,496 downloaded_date 07/10/2024 release_date 01/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_YGRTGACGTCAYVSV_sorted.bed.gz processed_file_md5 fc5ff1bf257b34b2b44c712f96ca0cef wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_YGRTGACGTCAYVSV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF627RSK_YGRTGACGTCAYVSV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF627RSK_YGRTGACGTCAYVSV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF627RSK_YGRTGACGTCAYVSV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b8ee7d01c869ca66ad9f91d17df141af data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing ATF1;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF627RSK;ENCODE_bigBed_id=ENCFF817JQF;PMID=34755879;Motif_sequence=YGRTGACGTCAYVSV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR091GVJ] [Life stage: Adult] [TFBS]
ATF1 • HepG2 NGFTBLRGWG4XXD • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBLRGWG4XXD data_source Factorbook Download track Download number_of_intervals 3,159 bp_covered 34,749 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR253OON biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 40,097 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_AGCCAATSRRR_sorted.bed.gz processed_file_md5 7bf536fb5aa93d86d15dca7141cdb6c9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_AGCCAATSRRR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_AGCCAATSRRR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF683OFC_AGCCAATSRRR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF683OFC_AGCCAATSRRR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0b3b8211407bf7657338de76a6a492dd data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF683OFC;ENCODE_bigBed_id=ENCFF239LTQ;PMID=34755879;Motif_sequence=AGCCAATSRRR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR253OON] [Life stage: Child] [TFBS]
ATF1 • K562 NGFTBM3IMDAYYA • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBM3IMDAYYA data_source Factorbook Download track Download number_of_intervals 1,932 bp_covered 38,640 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 38,268 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_GACGTCATCDSBSCGCGCCG_sorted.bed.gz processed_file_md5 ffe1becabafb58cf048ccf0eb4f1068a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_GACGTCATCDSBSCGCGCCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_GACGTCATCDSBSCGCGCCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_GACGTCATCDSBSCGCGCCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_GACGTCATCDSBSCGCGCCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 74b0aef3320a2e349745df2ff52f2079 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=GACGTCATCDSBSCGCGCCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBMUF3XG634 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBMUF3XG634 data_source Factorbook Download track Download number_of_intervals 2,208 bp_covered 30,912 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 38,856 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_CAGCCAATSRRARS_sorted.bed.gz processed_file_md5 f727bc0535670981697d52d4edd7e5ae wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_CAGCCAATSRRARS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_CAGCCAATSRRARS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF206BGR_CAGCCAATSRRARS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF206BGR_CAGCCAATSRRARS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be916b9224c730fd641a6b077d1b64d5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF206BGR;ENCODE_bigBed_id=ENCFF980NSF;PMID=34755879;Motif_sequence=CAGCCAATSRRARS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TFBS]
ATF1 • HepG2 NGFTBO6MDLKXG7 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBO6MDLKXG7 data_source Factorbook Download track Download number_of_intervals 6,116 bp_covered 67,276 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR253OON biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 79,928 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_RSCGGAAGYGS_sorted.bed.gz processed_file_md5 63c977d6a8e99d726fc9e03a877f5821 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_RSCGGAAGYGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_RSCGGAAGYGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF683OFC_RSCGGAAGYGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF683OFC_RSCGGAAGYGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f09a15f5f3e55dd88126bdc3475d06bc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF683OFC;ENCODE_bigBed_id=ENCFF239LTQ;PMID=34755879;Motif_sequence=RSCGGAAGYGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR253OON] [Life stage: Child] [TFBS]
ATF1 • K562 NGFTBPBSMMLAUM • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBPBSMMLAUM data_source Factorbook Download track Download number_of_intervals 12 bp_covered 240 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 535 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF206BGR_GGCGCGSSSYGATGACGTCR_filtered.bed.gz processed_file_md5 e78c291d562f03eda1debf376e8222d7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF206BGR_GGCGCGSSSYGATGACGTCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF206BGR_GGCGCGSSSYGATGACGTCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF206BGR_GGCGCGSSSYGATGACGTCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF206BGR_GGCGCGSSSYGATGACGTCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f0269bfd162a0b169c1f9c01bef8df4d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF206BGR;ENCODE_bigBed_id=ENCFF980NSF;PMID=34755879;Motif_sequence=GGCGCGSSSYGATGACGTCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBPZN3XE3K4 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBPZN3XE3K4 data_source Factorbook Download track Download number_of_intervals 4,645 bp_covered 69,675 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 83,877 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_SHRRTGACGTMABNV_sorted.bed.gz processed_file_md5 fabe400966af8b2bcfae93928c1e6e76 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_SHRRTGACGTMABNV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_SHRRTGACGTMABNV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF206BGR_SHRRTGACGTMABNV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF206BGR_SHRRTGACGTMABNV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 55b6684d0aac22d264c8b39b706cb78f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF206BGR;ENCODE_bigBed_id=ENCFF980NSF;PMID=34755879;Motif_sequence=SHRRTGACGTMABNV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TFBS]
ATF1 • HepG2 NGFTBRQHWWGNOS • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBRQHWWGNOS data_source Factorbook Download track Download number_of_intervals 3,170 bp_covered 34,870 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR253OON biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 35,891 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_RTGACGTMANN_sorted.bed.gz processed_file_md5 22f901698c5af3bdda13fead75361fb8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_RTGACGTMANN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683OFC_RTGACGTMANN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF683OFC_RTGACGTMANN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF683OFC_RTGACGTMANN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 30bb575a216822b5f3e358a68b8ca189 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF683OFC;ENCODE_bigBed_id=ENCFF239LTQ;PMID=34755879;Motif_sequence=RTGACGTMANN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR253OON] [Life stage: Child] [TFBS]
ATF1 • K562 NGFTBRWRBVEQ64 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRWRBVEQ64 data_source Factorbook Download track Download number_of_intervals 42 bp_covered 882 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,168 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA_filtered.bed.gz processed_file_md5 a2156dbe101443f5f0ae9903bdb39328 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_RGCGCTGTCCAYGGTGCTGAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c5944744ab5532ed66e18bf80c1f355a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=RGCGCTGTCCAYGGTGCTGAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBUF24B2QXD • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBUF24B2QXD data_source Factorbook Download track Download number_of_intervals 2,905 bp_covered 58,100 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DNZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 57,608 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_GGCGCGSSSYGATGACGTCR_sorted.bed.gz processed_file_md5 6da17e030f98287a61af4ff531706ea0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_GGCGCGSSSYGATGACGTCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF206BGR_GGCGCGSSSYGATGACGTCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF206BGR_GGCGCGSSSYGATGACGTCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF206BGR_GGCGCGSSSYGATGACGTCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f0269bfd162a0b169c1f9c01bef8df4d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Kevin Struhl, HMS;System=immune system;ENCODE_BED_id=ENCFF206BGR;ENCODE_bigBed_id=ENCFF980NSF;PMID=34755879;Motif_sequence=GGCGCGSSSYGATGACGTCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNZ] [Life stage: Adult] [TFBS]
ATF1 • K562 NGFTBW22PQ5BDM • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBW22PQ5BDM data_source Factorbook Download track Download number_of_intervals 1,134 bp_covered 29,484 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR159OCC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,725 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT_sorted.bed.gz processed_file_md5 fe85659c2100ee88de18b01c1046c718 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF924GPK_TCGSCGACRCMATAGMGSYGGGCCTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 96891904ab840623cc8dc07c0d1c5c24 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF924GPK;ENCODE_bigBed_id=ENCFF282LOA;PMID=34755879;Motif_sequence=TCGSCGACRCMATAGMGSYGGGCCTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR159OCC] [Life stage: Adult] [TFBS]
Reference annotation (ATF1) NGHOMSFTOXHONB • HOMER20513432 Motif finding Reference annotation (ATF1) TFBS Show metadata Download track Track metadata identifier NGHOMSFTOXHONB data_source HOMER Download track Download number_of_intervals 1,615,410 bp_covered 16,154,100 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody ATF1 assay Motif finding file_format bed bed6+5 Homer file_size 15,681,940 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Atf1_bZIP.hg38.processed.bed.gz processed_file_md5 a085ca20f79ce929a97756598ecee155 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Atf1_bZIP.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/Atf1_bZIP.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=Atf1;DNA_binding_domain=bZIP;Cell_type=K562;Assay=ChIP-Seq;Origin=GSE31477;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding ATF1 transcription factor binding sites (bed6+5 Homer) [TFBS]
ATF2 • K562 NGENC3AHRASCXK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC3AHRASCXK data_source ENCODE Download track Download number_of_intervals 1,231 bp_covered 568,600 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR014ARU biological_replicate 2 technical_replicate 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 25,011 downloaded_date 05/15/2024 release_date 09/03/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF226QRR.bed.gz processed_file_md5 9e78a1734df3e5637272da2569b6b389 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF226QRR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF226QRR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF226QRR/@@download/ENCFF226QRR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF226QRR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ad7e19f008d814f2135622d0f19710e5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE230904;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-09-13,2022-08-31;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR014ARU] [Life stage: Adult] [TF ChIP-seq peaks]