consolidated • Stomach NGEPMYUOKLIIIG • EpiMap33536621 ChromHMM Stomach Chromatin states Show metadata Download track Track metadata identifier NGEPMYUOKLIIIG data_source EpiMap Download track Download number_of_intervals 303,336 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,971,861 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01656_Roadmap_2015_All_hg38.bed.gz processed_file_md5 20141df01540b263efab01150134396c wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01656_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01656_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01656_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01656_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01656_18_CALLS_segments.bed.gz raw_file_md5 95a4a90ae546b2cdd502c96172066ea8 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=stomach male embryo (127 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01656;extended_md.donor.ids=ENCDO859GXV;extended_md.collated.donors=ENCDO859GXV;extended_md.accession=ENCSR608AHQ;extended_md.biosample.ids=ENCBS159PIU;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=127;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap Stomach ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Islet precursor cell NGEPMYV5Z4U5MW • EpiMap33536621 ChromHMM Islet precursor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMYV5Z4U5MW data_source EpiMap Download track Download number_of_intervals 321,900 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Islet precursor cell biosample_type In vitro differentiated cells biosample_term_id Not available tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,158,986 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00758_ENCODE_All_hg38.bed.gz processed_file_md5 063c17f88b7e565c22e8fecdd47eb6ed wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00758_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00758_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00758_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00758_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00758_18_CALLS_segments.bed.gz raw_file_md5 3448cd415b953ce323416799be82e653 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=islet precursor cell;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00758;extended_md.donor.ids=ENCDO222AAA;extended_md.collated.donors=ENCDO222AAA;extended_md.accession=ENCSR224FOA;extended_md.biosample.ids=ENCBS928AKR,ENCBS587BAO;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=5;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=NTR:0001484;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name EpiMap Islet precursor cell ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • BE2C NGEPMYWTZ3A2XD • EpiMap Enhancers33536621 ChromHMM BE2C Enhancer Show metadata Download track Track metadata identifier NGEPMYWTZ3A2XD data_source EpiMap_Enhancers Download track Download number_of_intervals 81,592 bp_covered 53,752,600 output_type enhancer chromatin states genome_build hg38 cell_type BE2C biosample_type Cell line biosample_term_id EFO:0005725 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 792,630 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00102_ENCODE_Enh_hg38.bed.gz processed_file_md5 2d949ef474f30e0c7727ff3b15ead568 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00102_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00102_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00102_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00102_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00102_18_CALLS_segments.bed.gz raw_file_md5 48356aab87e350edabb9bf4dd036c80a data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=BE2C;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00102;extended_md.donor.ids=ENCDO000ACQ;extended_md.collated.donors=ENCDO000ACQ;extended_md.accession=ENCSR000DQB,ENCSR000EMD;extended_md.biosample.ids=ENCBS982TUR,ENCBS271SFD,ENCBS403ENC;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=child;extended_md.age=2;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0005725;is_hg38_lifted=no system_category Nervous life_stage Child track_name EpiMap_Enhancers BE2C ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Child] [Enhancer]
consolidated • Kidney NGEPMYXEKJ4LV6 • EpiMap33536621 ChromHMM Kidney Chromatin states Show metadata Download track Track metadata identifier NGEPMYXEKJ4LV6 data_source EpiMap Download track Download number_of_intervals 355,758 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,488,066 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01514_Roadmap_2021_All_hg38.bed.gz processed_file_md5 4109a05f0e24c7939c358937c5d55c68 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01514_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01514_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01514_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01514_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01514_18_CALLS_segments.bed.gz raw_file_md5 77fc990a103ea22e32c1383645a2946b data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=right kidney male embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01514;extended_md.donor.ids=ENCDO119ASK;extended_md.collated.donors=ENCDO119ASK;extended_md.accession=ENCSR414ZUA;extended_md.biosample.ids=ENCBS566FDC;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Kidney ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Pancreas NGEPMYXX7TCKH4 • EpiMap Enhancers33536621 ChromHMM Pancreas Enhancer Show metadata Download track Track metadata identifier NGEPMYXX7TCKH4 data_source EpiMap_Enhancers Download track Download number_of_intervals 114,007 bp_covered 89,288,200 output_type enhancer chromatin states genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,057,945 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00123_ENCODE_Enh_hg38.bed.gz processed_file_md5 d3d81c7223fececf9cd88832756856ce wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00123_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00123_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00123_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00123_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00123_18_CALLS_segments.bed.gz raw_file_md5 bfe1c745d6d66481c6c7c9c1cac34a6f data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=body of pancreas male adult (37 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00123;extended_md.donor.ids=ENCDO845WKR;extended_md.collated.donors=ENCDO845WKR;extended_md.accession=ENCSR876DCP,ENCSR977CEC,ENCSR520BIM,ENCSR689SFJ,ENCSR760EGQ,ENCSR522WLH,ENCSR152PSA,ENCSR827NKO;extended_md.biosample.ids=ENCBS799DMW,ENCBS869MHP,ENCBS962ETL;extended_md.assay=ChIP-seq,ATAC-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=37;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name EpiMap_Enhancers Pancreas ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Large intestine NGEPMYY63B2ABD • EpiMap Enhancers33536621 ChromHMM Large intestine Enhancer Show metadata Download track Track metadata identifier NGEPMYY63B2ABD data_source EpiMap_Enhancers Download track Download number_of_intervals 94,108 bp_covered 62,126,000 output_type enhancer chromatin states genome_build hg38 cell_type Large intestine biosample_type Tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 886,224 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01113_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 6ab7832c7ba640d271692097952d8063 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01113_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01113_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01113_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01113_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01113_18_CALLS_segments.bed.gz raw_file_md5 d1017a35bf52b5bb4eb03935eb448f16 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=large intestine female embryo (110 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01113;extended_md.donor.ids=ENCDO087TLK;extended_md.collated.donors=ENCDO087TLK;extended_md.accession=ENCSR154YPL;extended_md.biosample.ids=ENCBS354ZZV;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=110;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name EpiMap_Enhancers Large intestine ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • iPS DF 6.9 NGEPMYZGHYOT4I • EpiMap Enhancers33536621 ChromHMM iPS DF 6.9 Enhancer Show metadata Download track Track metadata identifier NGEPMYZGHYOT4I data_source EpiMap_Enhancers Download track Download number_of_intervals 117,541 bp_covered 63,047,000 output_type enhancer chromatin states genome_build hg38 cell_type iPS DF 6.9 biosample_type Cell line biosample_term_id EFO:0007098 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,100,001 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00734_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 284cfa778043ab44a4545707867e7d73 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00734_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00734_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00734_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00734_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00734_18_CALLS_segments.bed.gz raw_file_md5 29c0bdfbf5066ed295cea65033c72f81 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=iPS DF 6.9;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00734;extended_md.donor.ids=ENCDO592CQV;extended_md.collated.donors=ENCDO592CQV;extended_md.accession=ENCSR261SMF,ENCSR875QDS,ENCSR857LLS,ENCSR916MHZ,ENCSR681AIW,ENCSR263ELQ,ENCSR173ZMH;extended_md.biosample.ids=ENCBS586ZNR,ENCBS111INZ,ENCBS757ZRB,ENCBS586ZNR,ENCBS757ZRB,ENCBS586ZNR;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=newborn;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007098;is_hg38_lifted=no system_category Stem Cell life_stage Newborn track_name EpiMap_Enhancers iPS DF 6.9 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Newborn] [Enhancer]
consolidated • KOPT-K1 NGEPMYZQPTGURE • EpiMap33536621 ChromHMM KOPT-K1 Chromatin states Show metadata Download track Track metadata identifier NGEPMYZQPTGURE data_source EpiMap Download track Download number_of_intervals 450,087 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type KOPT-K1 biosample_type Cell line biosample_term_id EFO:0006283 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,404,632 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01105_ENCODE_All_hg38.bed.gz processed_file_md5 0d300da34cf0950fb981e1306720ffcd wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01105_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01105_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01105_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01105_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01105_18_CALLS_segments.bed.gz raw_file_md5 f710372946c14985da02cfc9a0a8f087 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=KOPT-K1;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01105;extended_md.donor.ids=ENCDO568LPD;extended_md.collated.donors=ENCDO568LPD;extended_md.accession=ENCSR719FEJ,ENCSR879WTY,ENCSR630IBN,ENCSR438PYA;extended_md.biosample.ids=ENCBS869LIS,ENCBS345YKN;extended_md.assay=ChIP-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0006283;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap KOPT-K1 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Adrenal gland NGEPMZ2DZG75MA • EpiMap33536621 ChromHMM Adrenal gland Chromatin states Show metadata Download track Track metadata identifier NGEPMZ2DZG75MA data_source EpiMap Download track Download number_of_intervals 346,693 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,404,833 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00059_Roadmap_2021_All_hg38.bed.gz processed_file_md5 cd823004bee73e1344449d8a383b0400 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00059_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00059_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00059_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00059_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00059_18_CALLS_segments.bed.gz raw_file_md5 f117a2c313e25dfb7c90782e964d09af data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=adrenal gland male embryo (85 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00059;extended_md.donor.ids=ENCDO355UBP;extended_md.collated.donors=ENCDO355UBP;extended_md.accession=ENCSR856QJX;extended_md.biosample.ids=ENCBS210BUA;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=85;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name EpiMap Adrenal gland ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Fibroblast NGEPMZ2SGWUAN7 • EpiMap Enhancers33536621 ChromHMM Fibroblast Enhancer Show metadata Download track Track metadata identifier NGEPMZ2SGWUAN7 data_source EpiMap_Enhancers Download track Download number_of_intervals 160,071 bp_covered 114,104,600 output_type enhancer chromatin states genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,484,273 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00332_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 01fc266e07ac6d515229bf52c857ebbb wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00332_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00332_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00332_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00332_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00332_18_CALLS_segments.bed.gz raw_file_md5 0424b6207794ee79a89f728e0af3a4c8 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=fibroblast of breast female adult (17 years);tissue_of_origin=Breast;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00332;extended_md.donor.ids=ENCDO967GTN;extended_md.collated.donors=ENCDO967GTN;extended_md.accession=ENCSR728GTL,ENCSR324VZT,ENCSR403KAA,ENCSR595FWR,ENCSR579YLO;extended_md.biosample.ids=ENCBS542RJS,ENCBS300TDW;extended_md.assay=ChIP-seq;extended_md.life.stage=adult;extended_md.age=17;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers Fibroblast ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Endothelial cell NGEPMZ4ALNUMO4 • EpiMap Enhancers33536621 ChromHMM Endothelial cell Enhancer Show metadata Download track Track metadata identifier NGEPMZ4ALNUMO4 data_source EpiMap_Enhancers Download track Download number_of_intervals 106,531 bp_covered 74,612,600 output_type enhancer chromatin states genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,002,774 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01206_ENCODE_Enh_hg38.bed.gz processed_file_md5 6fa87abd91180854754408e2997893b1 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01206_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01206_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01206_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01206_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01206_18_CALLS_segments.bed.gz raw_file_md5 24f237c7cb2089c10c30f132fc9ca2a0 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=lung microvascular endothelial cell female;tissue_of_origin=Lung miscrovascular;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01206;extended_md.donor.ids=ENCDO238AAA,ENCDO237AAA;extended_md.collated.donors=ENCDO237AAA,ENCDO238AAA;extended_md.accession=ENCSR000EOD,ENCSR000EOE;extended_md.biosample.ids=ENCBS319AAA,ENCBS776PUN,ENCBS815TEQ,ENCBS318AAA;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name EpiMap_Enhancers Endothelial cell ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Small intestine NGEPMZ4IRPICB6 • EpiMap33536621 ChromHMM Small intestine Chromatin states Show metadata Download track Track metadata identifier NGEPMZ4IRPICB6 data_source EpiMap Download track Download number_of_intervals 412,548 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,996,719 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01599_Roadmap_2015_All_hg38.bed.gz processed_file_md5 8df62c1dad9b2c3777fe05b99298432f wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01599_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01599_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01599_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01599_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01599_18_CALLS_segments.bed.gz raw_file_md5 a782ec16e48a6205bec3d35574da868f data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=small intestine male child (3 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01599;extended_md.donor.ids=ENCDO478OMA;extended_md.collated.donors=ENCDO478OMA;extended_md.accession=ENCSR454VRA,ENCSR179NYV,ENCSR340OPI,ENCSR417RFS,ENCSR958DEW;extended_md.biosample.ids=ENCBS126DTB;extended_md.assay=ChIP-seq;extended_md.life.stage=child;extended_md.age=3;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Child track_name EpiMap Small intestine ChromHMM consolidated chromatin states (bed9) [Life stage: Child] [Chromatin states]
consolidated • iPS-NIHi7 NGEPMZ5DOAU7ZD • EpiMap Enhancers33536621 ChromHMM iPS-NIHi7 Enhancer Show metadata Download track Track metadata identifier NGEPMZ5DOAU7ZD data_source EpiMap_Enhancers Download track Download number_of_intervals 88,731 bp_covered 56,682,000 output_type enhancer chromatin states genome_build hg38 cell_type iPS-NIHi7 biosample_type Cell line biosample_term_id EFO:0007953 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 847,066 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00742_ENCODE_Enh_hg38.bed.gz processed_file_md5 7bd1c5be6fd50fef157bfa70c945bb84 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00742_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00742_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00742_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00742_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00742_18_CALLS_segments.bed.gz raw_file_md5 d932422813d44a2e8dc462ee1a407059 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=iPS-NIHi7 originated from AG08395;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00742;extended_md.donor.ids=ENCDO016AAA;extended_md.collated.donors=ENCDO016AAA;extended_md.accession=ENCSR000EKK;extended_md.biosample.ids=ENCBS557ENC;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=85;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0007953;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name EpiMap_Enhancers iPS-NIHi7 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Kidney NGEPMZ5LWJWYDI • EpiMap33536621 ChromHMM Kidney Chromatin states Show metadata Download track Track metadata identifier NGEPMZ5LWJWYDI data_source EpiMap Download track Download number_of_intervals 365,175 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,582,655 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01132_Roadmap_2021_All_hg38.bed.gz processed_file_md5 7e8ffbcbe818263e01c43fab5948aac2 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01132_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01132_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01132_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01132_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01132_18_CALLS_segments.bed.gz raw_file_md5 6fc4697814226dd921b2ec6b1c5acac0 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=left kidney female embryo (87 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01132;extended_md.donor.ids=ENCDO814BQX;extended_md.collated.donors=ENCDO814BQX;extended_md.accession=ENCSR295DUI;extended_md.biosample.ids=ENCBS657MPH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=87;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name EpiMap Kidney ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • AG04449 NGEPMZ6B2IEMGG • EpiMap Enhancers33536621 ChromHMM AG04449 Enhancer Show metadata Download track Track metadata identifier NGEPMZ6B2IEMGG data_source EpiMap_Enhancers Download track Download number_of_intervals 154,557 bp_covered 110,936,200 output_type enhancer chromatin states genome_build hg38 cell_type AG04449 biosample_type Cell line biosample_term_id CLO:0034837 tissue_category Skin encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,439,169 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00061_ENCODE_Enh_hg38.bed.gz processed_file_md5 2407858f9997cb2a2888f3ccc9ed3acc wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00061_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00061_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00061_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00061_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00061_18_CALLS_segments.bed.gz raw_file_md5 786f5f0b01b5a428348df23ef93195c2 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=AG04449;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00061;extended_md.donor.ids=ENCDO001AAA;extended_md.collated.donors=ENCDO001AAA;extended_md.accession=ENCSR000DPI,ENCSR000ELX;extended_md.biosample.ids=ENCBS667XPG,ENCBS003ENC,ENCBS747YUA,ENCBS338DRP;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=12;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Integumentary life_stage Embryonic track_name EpiMap_Enhancers AG04449 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Myotube NGEPMZAFXFBXLT • EpiMap Enhancers33536621 ChromHMM Myotube Enhancer Show metadata Download track Track metadata identifier NGEPMZAFXFBXLT data_source EpiMap_Enhancers Download track Download number_of_intervals 180,992 bp_covered 111,047,200 output_type enhancer chromatin states genome_build hg38 cell_type Myotube biosample_type In vitro differentiated cells biosample_term_id CL:0002372 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,661,805 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01344_ENCODE_2012_Enh_hg38.bed.gz processed_file_md5 772756a42513249e62fbb7f908a83689 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01344_ENCODE_2012_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01344_ENCODE_2012_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01344_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01344_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01344_18_CALLS_segments.bed.gz raw_file_md5 0454ad6c6b94217903335d746dd44ec9 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=myotube originated from skeletal muscle myoblast;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01344;extended_md.donor.ids=ENCDO341XKY,ENCDO094AAA;extended_md.collated.donors=ENCDO341XKY,ENCDO094AAA;extended_md.accession=ENCSR000ANU,ENCSR000ANV,ENCSR000ANW,ENCSR000ANX,ENCSR000EOP,ENCSR000ANY,ENCSR000ANZ,ENCSR000AOY,ENCSR000AOZ,ENCSR000AON,ENCSR000ATI,ENCSR000AQM;extended_md.biosample.ids=ENCBS276EMT,ENCBS276EMT,ENCBS526ENC,ENCBS639UHS,ENCBS236AFP,ENCBS639UHS;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=unknown,adult;extended_md.age=unknown,22;extended_md.age.units=NR,year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Adult, Unknown track_name EpiMap_Enhancers Myotube ChromHMM consolidated enhancer chromatin states (bed9) [Enhancer]
consolidated • Superior temporal gyrus NGEPMZAKH6RZ4K • EpiMap33536621 ChromHMM Superior temporal gyrus Chromatin states Show metadata Download track Track metadata identifier NGEPMZAKH6RZ4K data_source EpiMap Download track Download number_of_intervals 386,351 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Superior temporal gyrus biosample_type Tissue biosample_term_id UBERON:0002769 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,789,139 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01677_ENCODE_All_hg38.bed.gz processed_file_md5 178b1e70c4d7e6228bc8e9072d123cd9 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01677_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01677_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01677_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01677_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01677_18_CALLS_segments.bed.gz raw_file_md5 8823f5f62411b3607d1250f61691484c data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=superior temporal gyrus male adult (84 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01677;extended_md.donor.ids=ENCDO240JUB;extended_md.collated.donors=ENCDO240JUB;extended_md.accession=ENCSR382JUJ;extended_md.biosample.ids=ENCBS833HUD;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=84;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=UBERON:0002769;is_hg38_lifted=no system_category Nervous life_stage Adult track_name EpiMap Superior temporal gyrus ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Trophoblast NGEPMZAMDDWX2C • EpiMap Enhancers33536621 ChromHMM Trophoblast Enhancer Show metadata Download track Track metadata identifier NGEPMZAMDDWX2C data_source EpiMap_Enhancers Download track Download number_of_intervals 117,091 bp_covered 89,161,600 output_type enhancer chromatin states genome_build hg38 cell_type Trophoblast biosample_type Primary cell biosample_term_id UBERON:0000088 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,088,209 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01853_ENCODE_Enh_hg38.bed.gz processed_file_md5 2eb792edb72667fdb7918320330dfeb0 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01853_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01853_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01853_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01853_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01853_18_CALLS_segments.bed.gz raw_file_md5 f19ec1427f1a57fa2157465841ce5bdb data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=trophoblast cell embryo (21 week);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01853;extended_md.donor.ids=ENCDO333OMW,ENCDO096FKE;extended_md.collated.donors=ENCDO333OMW,ENCDO096FKE;extended_md.accession=ENCSR121ZSL;extended_md.biosample.ids=ENCBS627LRI,ENCBS478CDB;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=21;extended_md.age.units=week;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name EpiMap_Enhancers Trophoblast ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • GM12891 NGEPMZB4YYFKPI • EpiMap33536621 ChromHMM GM12891 Chromatin states Show metadata Download track Track metadata identifier NGEPMZB4YYFKPI data_source EpiMap Download track Download number_of_intervals 512,216 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type GM12891 biosample_type Cell line biosample_term_id EFO:0002785 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,996,893 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00452_ENCODE_All_hg38.bed.gz processed_file_md5 34b838c32418d91c502937206fd5a432 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00452_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00452_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00452_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00452_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00452_18_CALLS_segments.bed.gz raw_file_md5 03a41a261891612fdc5183c0dd0d71cd data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=GM12891;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00452;extended_md.donor.ids=ENCDO000ACA;extended_md.collated.donors=ENCDO000ACA;extended_md.accession=ENCSR000EJE;extended_md.biosample.ids=ENCBS384ENC;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=EFO:0002785;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name EpiMap GM12891 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Adrenal gland NGEPMZBANHPL5L • EpiMap Enhancers33536621 ChromHMM Adrenal gland Enhancer Show metadata Download track Track metadata identifier NGEPMZBANHPL5L data_source EpiMap_Enhancers Download track Download number_of_intervals 67,429 bp_covered 45,749,600 output_type enhancer chromatin states genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 643,104 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00051_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 77fc69e6c38db5554ed0a30b75f61595 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00051_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00051_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00051_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00051_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00051_18_CALLS_segments.bed.gz raw_file_md5 afc682fb7217fb41ff2820cc46972365 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=adrenal gland female embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00051;extended_md.donor.ids=ENCDO676JUB;extended_md.collated.donors=ENCDO676JUB;extended_md.accession=ENCSR696XSJ;extended_md.biosample.ids=ENCBS338LYQ;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Endocrine life_stage Embryonic track_name EpiMap_Enhancers Adrenal gland ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]