consolidated • Brain NGEPMZPYJBL2HD • EpiMap Enhancers33536621 ChromHMM Brain Enhancer Show metadata Download track Track metadata identifier NGEPMZPYJBL2HD data_source EpiMap_Enhancers Download track Download number_of_intervals 52,506 bp_covered 37,508,600 output_type enhancer chromatin states genome_build hg38 cell_type Brain biosample_type Tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 510,337 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00141_Roadmap_2015_Enh_hg38.bed.gz processed_file_md5 b1d3229e3108e30641f896534b28118e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00141_Roadmap_2015_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS00141_Roadmap_2015_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00141_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00141_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS00141_18_CALLS_segments.bed.gz raw_file_md5 23e0f4a7779f9a63f363f220b18356bd data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=brain male embryo (122 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00141;extended_md.donor.ids=ENCDO762SKK;extended_md.collated.donors=ENCDO762SKK;extended_md.accession=ENCSR627STE,ENCSR888JWS,ENCSR143MZL,ENCSR829NJE,ENCSR649KBB;extended_md.biosample.ids=ENCBS640AFZ,ENCBS377MBP;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=embryonic;extended_md.age=122;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name EpiMap_Enhancers Brain ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • A549 NGEPMZRNJVBCJ3 • EpiMap33536621 ChromHMM A549 Chromatin states Show metadata Download track Track metadata identifier NGEPMZRNJVBCJ3 data_source EpiMap Download track Download number_of_intervals 393,894 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,835,478 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00016_GGR_All_hg38.bed.gz processed_file_md5 6e4bb8a731f03299e891abc341b0daa1 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00016_GGR_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00016_GGR_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00016_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00016_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00016_18_CALLS_segments.bed.gz raw_file_md5 b420f51d9bd937c4a2923c74925a5a91 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=A549 treated with 100 nM dexamethasone for 10 hours;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00016;extended_md.donor.ids=ENCDO000AAZ;extended_md.collated.donors=ENCDO000AAZ;extended_md.accession=ENCSR013RTF,ENCSR954HUB,ENCSR128IVG,ENCSR139DGM,ENCSR180YHA,ENCSR766NHB;extended_md.biosample.ids=ENCBS146CRN,ENCBS157YZR,ENCBS142GEF,ENCBS892LLD,ENCBS455PIS,ENCBS798DNC,ENCBS933PFW,ENCBS447LYH,ENCBS261PDK,ENCBS106VMV,ENCBS462SQL,ENCBS993AJE,ENCBS570WAL,ENCBS962DEK,ENCBS851NMG,ENCBS734NQI,ENCBS844JPS,ENCBS552KSE,ENCBS719FNK;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=58;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name EpiMap A549 ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • OCI-LY7 NGEPMZSPHETHFA • EpiMap Enhancers33536621 ChromHMM OCI-LY7 Enhancer Show metadata Download track Track metadata identifier NGEPMZSPHETHFA data_source EpiMap_Enhancers Download track Download number_of_intervals 116,841 bp_covered 91,783,800 output_type enhancer chromatin states genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,090,206 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01391_ENCODE_Enh_hg38.bed.gz processed_file_md5 95d9352f6417a24d83af7a6d78fa77a5 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01391_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01391_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01391_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01391_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01391_18_CALLS_segments.bed.gz raw_file_md5 26066da1289c9c023f7c8093fc84b051 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=OCI-LY7;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01391;extended_md.donor.ids=ENCDO351AAA;extended_md.collated.donors=ENCDO351AAA;extended_md.accession=ENCSR331RGM,ENCSR243AIS,ENCSR199KHR,ENCSR850QKN,ENCSR489NAM,ENCSR347DAG,ENCSR060WGK,ENCSR447ZGY,ENCSR005SXO,ENCSR747ZDF,ENCSR389WWC;extended_md.biosample.ids=ENCBS006VZG,ENCBS886BJZ,ENCBS699NWP,ENCBS006VZG,ENCBS304FAI,ENCBS699NWP,ENCBS304FAI,ENCBS121JKZ,ENCBS581USS,ENCBS141AMI,ENCBS886BJZ,ENCBS121JKZ,ENCBS040MJM;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=48;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap_Enhancers OCI-LY7 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Thymus NGEPMZTYMIHBEZ • EpiMap33536621 ChromHMM Thymus Chromatin states Show metadata Download track Track metadata identifier NGEPMZTYMIHBEZ data_source EpiMap Download track Download number_of_intervals 480,128 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Thymus biosample_type Tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,700,454 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01821_Roadmap_2015_All_hg38.bed.gz processed_file_md5 8eefd717fce463f765d267691b23cc1a wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01821_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01821_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01821_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01821_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01821_18_CALLS_segments.bed.gz raw_file_md5 0182fe95d3364646561bb75c6340f40b data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=thymus female embryo (113 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01821;extended_md.donor.ids=ENCDO676JUB;extended_md.collated.donors=ENCDO676JUB;extended_md.accession=ENCSR342NCX;extended_md.biosample.ids=ENCBS500WIH;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=113;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Lymphatic life_stage Embryonic track_name EpiMap Thymus ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • Small intestine NGEPMZVBRL7WKU • EpiMap33536621 ChromHMM Small intestine Chromatin states Show metadata Download track Track metadata identifier NGEPMZVBRL7WKU data_source EpiMap Download track Download number_of_intervals 376,276 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Small intestine biosample_type Tissue biosample_term_id UBERON:0002108 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,631,305 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01597_Roadmap_2015_All_hg38.bed.gz processed_file_md5 22dfd7b4744252db4725368be8b9475e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01597_Roadmap_2015_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01597_Roadmap_2015_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01597_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01597_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01597_18_CALLS_segments.bed.gz raw_file_md5 55017cbe3257675b2d607595c058df72 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=small intestine male adult (34 years);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01597;extended_md.donor.ids=ENCDO058AAA;extended_md.collated.donors=ENCDO058AAA;extended_md.accession=ENCSR931UQB,ENCSR543CPW,ENCSR792IJA;extended_md.biosample.ids=ENCBS853LFM;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=34;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Adult track_name EpiMap Small intestine ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Lung NGEPMZWAYAFAHV • EpiMap Enhancers33536621 ChromHMM Lung Enhancer Show metadata Download track Track metadata identifier NGEPMZWAYAFAHV data_source EpiMap_Enhancers Download track Download number_of_intervals 113,123 bp_covered 84,418,400 output_type enhancer chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,072,533 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01203_Roadmap_2021_Enh_hg38.bed.gz processed_file_md5 63d12e7b9f8936c9476d56f2304a5607 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01203_Roadmap_2021_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01203_Roadmap_2021_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01203_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01203_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01203_18_CALLS_segments.bed.gz raw_file_md5 f79a00a46336d65adedc80871039cb47 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=lung male embryo (108 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01203;extended_md.donor.ids=ENCDO177SBN;extended_md.collated.donors=ENCDO177SBN;extended_md.accession=ENCSR076YBB;extended_md.biosample.ids=ENCBS015WUS;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=108;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap_Enhancers Lung ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • Ovary NGEPMZWPJUCVDZ • EpiMap33536621 ChromHMM Ovary Chromatin states Show metadata Download track Track metadata identifier NGEPMZWPJUCVDZ data_source EpiMap Download track Download number_of_intervals 287,610 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Ovary biosample_type Tissue biosample_term_id NCIT:C12404 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 2,818,669 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01401_ENCODE_All_hg38.bed.gz processed_file_md5 45840ef74e409ff61328d9082290f0ba wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01401_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS01401_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01401_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS01401_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS01401_18_CALLS_segments.bed.gz raw_file_md5 d57c650af41edf7d742a4166b9053479 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=ovary female adult (51 year);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01401;extended_md.donor.ids=ENCDO271OUW;extended_md.collated.donors=ENCDO271OUW;extended_md.accession=ENCSR855DJV;extended_md.biosample.ids=ENCBS279OPH;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=51;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap Ovary ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • PC-3 NGEPMZWVH7SB6Z • EpiMap Enhancers33536621 ChromHMM PC-3 Enhancer Show metadata Download track Track metadata identifier NGEPMZWVH7SB6Z data_source EpiMap_Enhancers Download track Download number_of_intervals 168,434 bp_covered 105,965,800 output_type enhancer chromatin states genome_build hg38 cell_type PC-3 biosample_type Cell line biosample_term_id EFO:0002074 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,529,376 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01414_ENCODE_Enh_hg38.bed.gz processed_file_md5 fbee3aac4c4f1dff90e605287f26466e wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01414_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01414_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01414_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01414_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01414_18_CALLS_segments.bed.gz raw_file_md5 7b144672b8d25e50960f6a71e1040696 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=PC-3;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01414;extended_md.donor.ids=ENCDO349AAA;extended_md.collated.donors=ENCDO349AAA;extended_md.accession=ENCSR275NCH,ENCSR461HUD,ENCSR197QXT,ENCSR943LZX,ENCSR849APH,ENCSR826UTD,ENCSR788EQL,ENCSR566UMF,ENCSR052AWE,ENCSR946QFD,ENCSR339ZMJ,ENCSR881TWJ,ENCSR695SCQ,ENCSR764KFK;extended_md.biosample.ids=ENCBS596CTT,ENCBS504WVV,ENCBS451OVM,ENCBS420VDY,ENCBS596CTT;extended_md.assay=ChIP-seq,DNase-seq;extended_md.life.stage=adult;extended_md.age=62;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name EpiMap_Enhancers PC-3 ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Adult] [Enhancer]
consolidated • Heart NGEPMZXRERWG5B • EpiMap33536621 ChromHMM Heart Chromatin states Show metadata Download track Track metadata identifier NGEPMZXRERWG5B data_source EpiMap Download track Download number_of_intervals 375,014 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Heart biosample_type Tissue biosample_term_id NCIT:C12727 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,646,674 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00518_Roadmap_2021_All_hg38.bed.gz processed_file_md5 d1b78ba31bf68859671c246856505276 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00518_Roadmap_2021_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00518_Roadmap_2021_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00518_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00518_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00518_18_CALLS_segments.bed.gz raw_file_md5 2c1f39848d456d1b9a026975ad24d1ad data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=heart male embryo (110 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00518;extended_md.donor.ids=ENCDO640NNW;extended_md.collated.donors=ENCDO640NNW;extended_md.accession=ENCSR311LLZ;extended_md.biosample.ids=ENCBS125CGW;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=110;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Embryonic track_name EpiMap Heart ChromHMM consolidated chromatin states (bed9) [Life stage: Embryonic] [Chromatin states]
consolidated • CWRU1 NGEPMZYINJBNI2 • EpiMap33536621 ChromHMM CWRU1 Chromatin states Show metadata Download track Track metadata identifier NGEPMZYINJBNI2 data_source EpiMap Download track Download number_of_intervals 399,509 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type CWRU1 biosample_type Cell line biosample_term_id EFO:0009501 tissue_category iPSC encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 3,914,044 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00244_ENCODE_All_hg38.bed.gz processed_file_md5 f8fc17ac0d003ba41d827b5c84a1efca wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00244_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00244_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00244_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00244_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00244_18_CALLS_segments.bed.gz raw_file_md5 87fb26556fa2f06e2a9f55b76f066859 data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=CWRU1;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00244;extended_md.donor.ids=ENCDO298AAA;extended_md.collated.donors=ENCDO298AAA;extended_md.accession=ENCSR000EKI;extended_md.biosample.ids=ENCBS334AAA;extended_md.assay=DNase-seq;extended_md.life.stage=unknown;extended_md.age=unknown;extended_md.age.units=NR;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Stem Cell life_stage Unknown track_name EpiMap CWRU1 ChromHMM consolidated chromatin states (bed9) [Chromatin states]
consolidated • Hematopoietic multipotent progenitor cell NGEPMZYJNK7MHN • EpiMap33536621 ChromHMM Hematopoietic multipotent progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGEPMZYJNK7MHN data_source EpiMap Download track Download number_of_intervals 458,400 bp_covered 2,820,428,400 output_type chromatin states genome_build hg38 cell_type Hematopoietic multipotent progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000837 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 4,478,107 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00548_ENCODE_All_hg38.bed.gz processed_file_md5 844b9437c751c76520379bf1f3e47d01 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00548_ENCODE_All_hg38.bed.gz -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/formatted_output_BSS00548_ENCODE_All_hg38.bed.gz.tbi -P FILER2/Annotationtracks/EpiMap/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS00548_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap/hg19/BSS00548_18_CALLS_segments.bed.gz -P FILER2/Annotationtracks/Downloads/EpiMap/hg19/BSS00548_18_CALLS_segments.bed.gz raw_file_md5 7aca37fb0f10715647eb47f1fea6f3ac data_category Chromatin states Genomic feature type ChromHMM consolidated chromatin states track_description version=2021;Original_cell_type=hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 dayskit ligand for 17 dayshydrocortisone succinate for 17 dayserythropoietin for 17 days;doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS00548;extended_md.donor.ids=ENCDO937OUY;extended_md.collated.donors=ENCDO937OUY;extended_md.accession=ENCSR362JSZ;extended_md.biosample.ids=ENCBS448WOE,ENCBS335BSM;extended_md.assay=DNase-seq;extended_md.life.stage=adult;extended_md.age=25;extended_md.age.units=year;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name EpiMap Hematopoietic multipotent progenitor cell ChromHMM consolidated chromatin states (bed9) [Life stage: Adult] [Chromatin states]
consolidated • Lung NGEPMZYXRPJO3A • EpiMap Enhancers33536621 ChromHMM Lung Enhancer Show metadata Download track Track metadata identifier NGEPMZYXRPJO3A data_source EpiMap_Enhancers Download track Download number_of_intervals 124,361 bp_covered 86,192,400 output_type enhancer chromatin states genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed9 file_size 1,165,741 downloaded_date 10/22/2021 release_date 02/19/2021 date_added_to_filer 05/20/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01189_ENCODE_Enh_hg38.bed.gz processed_file_md5 b18d27317ac3b498fc5c25a558e9cf25 wget_command wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01189_ENCODE_Enh_hg38.bed.gz -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/formatted_output_BSS01189_ENCODE_Enh_hg38.bed.gz.tbi -P GADB/Annotationtracks/EpiMap_enhancers/ChromHMM/bed9/hg38/ link_out_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/ raw_file_url https://personal.broadinstitute.org/cboix/epimap/ChromHMM/observed_aux_18_hg38/CALLS/BSS01189_18_CALLS_segments.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01189_18_CALLS_segments.bed.gz -P GADB/Annotationtracks/Downloads/EpiMap_Enhancers/hg38/BSS01189_18_CALLS_segments.bed.gz raw_file_md5 8ea9feee73f0049f2984c6a6a97f4087 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2021;Original_cell_type=lung embryo (80 days) and male embryo (76 days);doi=https://doi.org/10.1038/s41586-020-03145-z;pubmed_id=33536621;bss_id=BSS01189;extended_md.donor.ids=ENCDO647EYG,ENCDO662IIE;extended_md.collated.donors=ENCDO647EYG,ENCDO662IIE;extended_md.accession=ENCSR582IPV;extended_md.biosample.ids=ENCBS511SOC,ENCBS964WZC;extended_md.assay=DNase-seq;extended_md.life.stage=embryonic;extended_md.age=80,76;extended_md.age.units=day;schema=BED9;dataSource_pubmed_id=33536621;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/EpiMap_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name EpiMap_Enhancers Lung ChromHMM consolidated enhancer chromatin states (bed9) [Life stage: Embryonic] [Enhancer]
consolidated • HepG2 NGRMP232O4R3R2 • ROADMAP25693563 ChromHMM HepG2 Chromatin states Show metadata Download track Track metadata identifier NGRMP232O4R3R2 data_source ROADMAP Download track Download number_of_intervals 567,946 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 3,375,531 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E118_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 45f7c00a15639a2c0d24919d016115aa wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E118_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E118_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E118_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 a23f7bf9e6d3c0a991bddf2bf0005fae data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=HepG2 Hepatocellular Carcinoma Cell Line;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name ROADMAP HepG2 ChromHMM consolidated chromatin states (bed4) [Chromatin states]
consolidated • Sigmoid colon NGRMP257O6GBUQ • ROADMAP25693563 ChromHMM Sigmoid colon Chromatin states Show metadata Download track Track metadata identifier NGRMP257O6GBUQ data_source ROADMAP Download track Download number_of_intervals 393,420 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type Sigmoid colon biosample_type Primary tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,315,840 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E106_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 8586e95a1a51509aea91213d041af907 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E106_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E106_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E106_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 e3d64f0589eb2b00497973e4d6947da8 data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=Sigmoid Colon;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name ROADMAP Sigmoid colon ChromHMM consolidated chromatin states (bed4) [Chromatin states]
consolidated • T-helper cell NGRMP272GQQDEF • ROADMAP25693563 ChromHMM T-helper cell Chromatin states Show metadata Download track Track metadata identifier NGRMP272GQQDEF data_source ROADMAP Download track Download number_of_intervals 361,324 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type T-helper cell biosample_type Primary cell biosample_term_id CL:0000912 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,158,443 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E043_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 354f9f19a15583190f11193d1f5dfdd9 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E043_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E043_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E043_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 9b84869666b69f491d86b631cf62a5ab data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=Primary T helper cells from peripheral blood;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ROADMAP T-helper cell ChromHMM consolidated chromatin states (bed4) [Chromatin states]
consolidated • Osteoblast NGRMP2GR3NAEOE • ROADMAP Enhancers25693563 ChromHMM Osteoblast Enhancer Show metadata Download track Track metadata identifier NGRMP2GR3NAEOE data_source ROADMAP_Enhancers Download track Download number_of_intervals 132,897 bp_covered 126,348,357 output_type enhancer chromatin states genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 863,810 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E129_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz processed_file_md5 4f1ae503d7f044020f6fcc86e55c97b8 wget_command wget https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E129_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz -P GADB/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E129_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz.tbi -P GADB/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E129_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 4fb42477a3c5dd2e4257dc5494557520 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2018;Original_cell_type=Osteoblast Primary Cells;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Skeletal life_stage Unknown track_name ROADMAP_Enhancers Osteoblast ChromHMM consolidated enhancer chromatin states (bed4) [Enhancer]
consolidated • Muscle NGRMP2L4RCS7ZB • ROADMAP25693563 ChromHMM Muscle Chromatin states Show metadata Download track Track metadata identifier NGRMP2L4RCS7ZB data_source ROADMAP Download track Download number_of_intervals 570,289 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type Muscle biosample_type Primary tissue biosample_term_id NCIT:C13056 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 3,373,281 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E090_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 a6a8d9711df305f9be86289e5ae15147 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E090_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E090_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E090_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 7725f2c22fbed3ce68dbbc4279f15953 data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=Fetal Muscle Leg;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Fetal track_name ROADMAP Muscle ChromHMM consolidated chromatin states (bed4) [Life stage: Fetal] [Chromatin states]
consolidated • Skeletal muscle NGRMP2L4VZ7KSY • ROADMAP Enhancers25693563 ChromHMM Skeletal muscle Enhancer Show metadata Download track Track metadata identifier NGRMP2L4VZ7KSY data_source ROADMAP_Enhancers Download track Download number_of_intervals 134,234 bp_covered 127,964,141 output_type enhancer chromatin states genome_build hg38 cell_type Skeletal muscle biosample_type Primary tissue biosample_term_id BTO:0001103 tissue_category Skeletal Muscle encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 871,960 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E107_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz processed_file_md5 32cddc7e71bd8cfb096f8c2537b1b77f wget_command wget https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E107_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz -P GADB/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E107_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz.tbi -P GADB/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E107_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 722797f22ca2dd8f562f41f69f98dfe0 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2018;Original_cell_type=Skeletal Muscle Male;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP_Enhancers.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Muscular life_stage Unknown track_name ROADMAP_Enhancers Skeletal muscle ChromHMM consolidated enhancer chromatin states (bed4) [Enhancer]
consolidated • Hematopoietic stem cell NGRMP2PWEG24SD • ROADMAP25693563 ChromHMM Hematopoietic stem cell Chromatin states Show metadata Download track Track metadata identifier NGRMP2PWEG24SD data_source ROADMAP Download track Download number_of_intervals 440,994 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type Hematopoietic stem cell biosample_type Stem cell biosample_term_id CL:0000037 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,615,711 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E035_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 4265cd85df8bd651d46e3678747dc5ec wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E035_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E035_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E035_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 43fc866d62e8506bd69212b7dc37e963 data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=Primary hematopoietic stem cells;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Stem Cell life_stage Unknown track_name ROADMAP Hematopoietic stem cell ChromHMM consolidated chromatin states (bed4) [Chromatin states]
consolidated • H1-hESC NGRMP2RBQRXZY3 • ROADMAP25693563 ChromHMM H1-hESC Chromatin states Show metadata Download track Track metadata identifier NGRMP2RBQRXZY3 data_source ROADMAP Download track Download number_of_intervals 457,851 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,692,133 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E003_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 195027ba00bf955aeb13afcf2cc270a2 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E003_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E003_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E003_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 a5a0f7cf243a3002669993797b44a164 data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=H1 Cells;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ROADMAP H1-hESC ChromHMM consolidated chromatin states (bed4) [Life stage: Embryonic] [Chromatin states]