ATF2 • GM12878 NGENCNDMQFP4GK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCNDMQFP4GK data_source ENCODE Download track Download number_of_intervals 14,087 bp_covered 5,132,117 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR961PPA biological_replicate 1 technical_replicate 1_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 282,598 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF995NRU.bed.gz processed_file_md5 e7445a03ffac9b65dca89d8a011418ce wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF995NRU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF995NRU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF995NRU/@@download/ENCFF995NRU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF995NRU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e94f643199756246f75be46ab2be61bb data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR961PPA,GEO:GSE127666;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-26,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR961PPA] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • WTC11 NGENCNQNPUMBVJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCNQNPUMBVJ data_source ENCODE Download track Download number_of_intervals 927 bp_covered 323,393 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR928BPP biological_replicate 1 technical_replicate 1_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 17,453 downloaded_date 05/15/2024 release_date 09/03/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF632CEF.bed.gz processed_file_md5 f90174ab1c5d95970bc4cc469050420f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF632CEF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF632CEF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF632CEF/@@download/ENCFF632CEF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF632CEF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 12c3c92b73237ab7b6cc84447940fdbd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231210;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-09-30,2022-07-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR928BPP] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • GM12878 NGENCNQTQK444X • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCNQTQK444X data_source ENCODE Download track Download number_of_intervals 21,046 bp_covered 9,380,945 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BQK biological_replicate 1 technical_replicate 1_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 401,508 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF096LOH.bed.gz processed_file_md5 e938ce556d958ba1946578480209d284 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF096LOH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF096LOH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF096LOH/@@download/ENCFF096LOH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF096LOH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e8b5c5456abbf8b3b8dbfbce90787bf2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSM1010780,FactorBook:ENCSR000BQK,UCSC-ENCODE-hg19:wgEncodeEH002306;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-02-29,2012-09-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQK] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • WTC11 NGENCOCKQC5AZV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCOCKQC5AZV data_source ENCODE Download track Download number_of_intervals 1,309 bp_covered 456,974 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR928BPP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 25,977 downloaded_date 05/15/2024 release_date 09/03/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF885OBU.bed.gz processed_file_md5 4bbd31de5d22334e583a1f45a13e2e4a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF885OBU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF885OBU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF885OBU/@@download/ENCFF885OBU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF885OBU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 88c0271f54c101ec2b53aac9217eebbc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231210;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-09-30,2022-07-25;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR928BPP] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • HepG2 NGENCORYF2CDOQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCORYF2CDOQ data_source ENCODE Download track Download number_of_intervals 10,250 bp_covered 4,512,045 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR908HWZ biological_replicate 2 technical_replicate 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 177,919 downloaded_date 06/12/2022 release_date 07/06/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF879THN.bed.gz processed_file_md5 e99ca130aa9bdfb2582dc7be9c7ada82 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF879THN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF879THN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF879THN/@@download/ENCFF879THN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF879THN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a437c76489a36eb61866143423fb4767 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170579;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-09,2016-10-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR908HWZ] [Life stage: Child] [TF ChIP-seq peaks]
ATF2 • GM12878 NGENCPUIIPYLTN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCPUIIPYLTN data_source ENCODE Download track Download number_of_intervals 9,705 bp_covered 3,747,351 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR961PPA biological_replicate 2 technical_replicate 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 183,399 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF988EKK.bed.gz processed_file_md5 01d93e6de81edc4d0be3bb1445511d89 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF988EKK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF988EKK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF988EKK/@@download/ENCFF988EKK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF988EKK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 250e15f422b870eff475099c5630706b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR961PPA,GEO:GSE127666;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-26,2016-09-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR961PPA] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • HepG2 NGENCR2V273S5Y • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCR2V273S5Y data_source ENCODE Download track Download number_of_intervals 27,048 bp_covered 8,007,193 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR047BUZ biological_replicate 2 technical_replicate 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 484,523 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF884DFM.bed.gz processed_file_md5 ae2f71e0e78d2afde3610250fe289e54 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF884DFM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF884DFM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF884DFM/@@download/ENCFF884DFM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF884DFM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7fffd0c984e0e5dc3cd363df2e4197af data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE105200,FactorBook:ENCSR047BUZ;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR047BUZ] [Life stage: Child] [TF ChIP-seq peaks]
ATF2 • GM12878 NGENCSGQRFHUHA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCSGQRFHUHA data_source ENCODE Download track Download number_of_intervals 14,269 bp_covered 5,289,957 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR961PPA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 291,191 downloaded_date 06/12/2022 release_date 12/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF172WJF.bed.gz processed_file_md5 76bb4b703f5263bf708e6c0f3d449b54 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF172WJF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF172WJF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF172WJF/@@download/ENCFF172WJF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF172WJF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eda3ede00753a0b0f81f524eefc03481 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR961PPA,GEO:GSE127666;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-26,2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq ATF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR961PPA] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • HepG2 NGENCU3UL6MTEP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCU3UL6MTEP data_source ENCODE Download track Download number_of_intervals 59,468 bp_covered 18,402,424 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR047BUZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 1,086,782 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF955VER.bed.gz processed_file_md5 b575ecce7895e81f78d04e2da69b7889 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF955VER.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF955VER.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF955VER/@@download/ENCFF955VER.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF955VER.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e8a6bbf01efb3cb1af2511628e004846 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2,DREAM;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE105200,FactorBook:ENCSR047BUZ;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR047BUZ] [Life stage: Child] [TF ChIP-seq peaks]
ATF2 • K562 NGENCWEX3KFJ2F • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCWEX3KFJ2F data_source ENCODE Download track Download number_of_intervals 1,977 bp_covered 855,033 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR014ARU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 39,919 downloaded_date 05/15/2024 release_date 09/03/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF367LGX.bed.gz processed_file_md5 aa1469120c2b486a829c45d4977f4248 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF367LGX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF367LGX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF367LGX/@@download/ENCFF367LGX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF367LGX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 48c74f63afbd04d78ed85c718fca56b4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE230904;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-09-13,2022-08-31;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq ATF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR014ARU] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • HEK293 NGENCWGGH3HPKW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCWGGH3HPKW data_source ENCODE Download track Download number_of_intervals 14,954 bp_covered 5,231,972 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR217HTK biological_replicate 1 technical_replicate 1_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 284,182 downloaded_date 06/12/2022 release_date 08/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF622MIN.bed.gz processed_file_md5 32feab9e06d72727a18e252e730d55fe wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF622MIN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF622MIN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF622MIN/@@download/ENCFF622MIN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF622MIN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 25b410bb5457a387698cbb28bd6ccea0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR217HTK,GEO:GSE91583;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR217HTK] [Life stage: Embryonic] [TF ChIP-seq peaks]
ATF2 • HEK293 NGENCY2TYEUUD2 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCY2TYEUUD2 data_source ENCODE Download track Download number_of_intervals 14,267 bp_covered 4,799,383 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR217HTK biological_replicate 2 technical_replicate 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 271,297 downloaded_date 06/12/2022 release_date 08/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169UYH.bed.gz processed_file_md5 dc68437ad88d67118d2f987c6c2afcab wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169UYH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF169UYH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF169UYH/@@download/ENCFF169UYH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF169UYH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 016c8be89693e9ff52272826511cde77 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR217HTK,GEO:GSE91583;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 2) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR217HTK] [Life stage: Embryonic] [TF ChIP-seq peaks]
ATF2 • H1-hESC NGENCYYDPQ7V2K • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCYYDPQ7V2K data_source ENCODE Download track Download number_of_intervals 5,140 bp_covered 2,646,757 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BQU biological_replicate 1 technical_replicate 1_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 90,240 downloaded_date 06/12/2022 release_date 01/02/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF713NYV.bed.gz processed_file_md5 96d0c6cedcdcbba281dd28b8c7f30f41 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF713NYV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF713NYV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF713NYV/@@download/ENCFF713NYV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF713NYV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9bb03eac3d1d94aa4555cb4dfd13828e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002316,FactorBook:ENCSR000BQU,GEO:GSM1010742;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-02-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) TF ChIP-seq ATF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQU] [Life stage: Embryonic] [TF ChIP-seq peaks]
ATF2 • GM12878 NGENCZ7JU7WSC3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCZ7JU7WSC3 data_source ENCODE Download track Download number_of_intervals 23,048 bp_covered 10,648,997 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BQK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 452,266 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF580WEZ.bed.gz processed_file_md5 9492275cf121a7fdbf8eb5ef647db977 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF580WEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF580WEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF580WEZ/@@download/ENCFF580WEZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF580WEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7723dbdf79699be579a041125ad13f50 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSM1010780,FactorBook:ENCSR000BQK,UCSC-ENCODE-hg19:wgEncodeEH002306;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-02-29,2012-09-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq ATF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BQK] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • WTC11 NGENCZXMUVYYV3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCZXMUVYYV3 data_source ENCODE Download track Download number_of_intervals 1,139 bp_covered 397,474 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR928BPP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay TF ChIP-seq file_format bed narrowPeak file_size 22,545 downloaded_date 05/15/2024 release_date 09/03/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF977AOK.bed.gz processed_file_md5 52d4a51b80dcef415c3a9df6b00a75f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF977AOK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF977AOK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF977AOK/@@download/ENCFF977AOK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF977AOK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3987a8a4eb01b553520ff2227c46a2d6 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ATF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231210;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-09-30,2022-07-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq ATF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR928BPP] [Life stage: Adult] [TF ChIP-seq peaks]
ATF2 • GM12878 NGFTB4A6PM2QLC • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB4A6PM2QLC data_source Factorbook Download track Download number_of_intervals 7,007 bp_covered 77,077 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BQK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 93,038 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF973FKS_ATGACATCATY_sorted.bed.gz processed_file_md5 584cdc7dd4973c1c72cf3580198f3351 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF973FKS_ATGACATCATY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF973FKS_ATGACATCATY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF973FKS_ATGACATCATY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF973FKS_ATGACATCATY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4b03b0b48c23fcd6e5fa25cd1a49f47d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF973FKS;ENCODE_bigBed_id=ENCFF521LQJ;PMID=34755879;Motif_sequence=ATGACATCATY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding ATF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BQK] [TFBS]
ATF2 • HepG2 NGFTB75YPXILOP • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB75YPXILOP data_source Factorbook Download track Download number_of_intervals 18,286 bp_covered 274,290 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR047BUZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 255,870 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF994LMJ_CATCATCACCATCAY_sorted.bed.gz processed_file_md5 3d90a00a7637e20ff70223a3e7411615 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF994LMJ_CATCATCACCATCAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF994LMJ_CATCATCACCATCAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF994LMJ_CATCATCACCATCAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF994LMJ_CATCATCACCATCAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 da698f7cf2492c3955a9efc583b9fed3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF994LMJ;ENCODE_bigBed_id=ENCFF955VER;PMID=34755879;Motif_sequence=CATCATCACCATCAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR047BUZ] [Life stage: Child] [TFBS]
ATF2 • HepG2 NGFTBCOS6ZSPF7 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBCOS6ZSPF7 data_source Factorbook Download track Download number_of_intervals 973 bp_covered 29,190 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR047BUZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,945 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA_filtered.bed.gz processed_file_md5 ed8f1ed9f6e777f9f414d9dd3749aa41 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7708d470f708287b2e914e8360689b04 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF994LMJ;ENCODE_bigBed_id=ENCFF955VER;PMID=34755879;Motif_sequence=TATTTGGRRAYAGGGTYYTTGCAGATGTAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR047BUZ] [Life stage: Child] [TFBS]
ATF2 • K562 NGFTBDTZUOHO7T • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBDTZUOHO7T data_source Factorbook Download track Download number_of_intervals 53,166 bp_covered 637,992 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR869IUD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 680,798 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF192ASP_RRTGACGTCATS_sorted.bed.gz processed_file_md5 88199b43a51352749ed69d1ae9cfc9d2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF192ASP_RRTGACGTCATS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF192ASP_RRTGACGTCATS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF192ASP_RRTGACGTCATS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF192ASP_RRTGACGTCATS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7aa617edc47b9cf8c9e71004beae6920 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF192ASP;ENCODE_bigBed_id=ENCFF139ZZG;PMID=34755879;Motif_sequence=RRTGACGTCATS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR869IUD] [Life stage: Adult] [TFBS]
ATF2 • HepG2 NGFTBFJBBWNDNZ • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBFJBBWNDNZ data_source Factorbook Download track Download number_of_intervals 9,431 bp_covered 282,930 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR047BUZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 224,916 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA_sorted.bed.gz processed_file_md5 a1b39fa0060b4686d61e35c37a13d18d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF994LMJ_TATTTGGRRAYAGGGTYYTTGCAGATGTAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7708d470f708287b2e914e8360689b04 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF994LMJ;ENCODE_bigBed_id=ENCFF955VER;PMID=34755879;Motif_sequence=TATTTGGRRAYAGGGTYYTTGCAGATGTAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR047BUZ] [Life stage: Child] [TFBS]