consolidated • Neuronal progenitor cell NGRMPZHINEUUEY • ROADMAP25693563 ChromHMM Neuronal progenitor cell Chromatin states Show metadata Download track Track metadata identifier NGRMPZHINEUUEY data_source ROADMAP Download track Download number_of_intervals 352,125 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type Neuronal progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0000047 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,042,527 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E007_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 1c57fa7533736879d9b05509cab34575 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E007_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E007_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E007_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 91278472ef6f51c4f4917f29e3cefcbb data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=H1 Derived Neuronal Progenitor Cultured Cells;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Stem Cell life_stage Embryonic track_name ROADMAP Neuronal progenitor cell ChromHMM consolidated chromatin states (bed4) [Life stage: Embryonic] [Chromatin states]
consolidated • Brain NGRMPZJ7LO3VZ2 • ROADMAP25693563 ChromHMM Brain Chromatin states Show metadata Download track Track metadata identifier NGRMPZJ7LO3VZ2 data_source ROADMAP Download track Download number_of_intervals 426,112 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type Brain biosample_type Primary tissue biosample_term_id UBERON:0000955 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,519,481 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E082_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 823858f0addd84fc57b83f73d33c2991 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E082_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E082_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E082_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 28d7e24df35a578f3f173289ec069d10 data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=Fetal Brain Female;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Nervous life_stage Fetal track_name ROADMAP Brain ChromHMM consolidated chromatin states (bed4) [Life stage: Fetal] [Chromatin states]
consolidated • Large intestine NGRMPZKTNJOV6Z • ROADMAP25693563 ChromHMM Large intestine Chromatin states Show metadata Download track Track metadata identifier NGRMPZKTNJOV6Z data_source ROADMAP Download track Download number_of_intervals 453,559 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type Large intestine biosample_type Primary tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,693,136 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E084_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 fa3bab929dd65c59b681c45b86da0b2c wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E084_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E084_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E084_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 89f0f967599d0c84a0801c7c5a64bd84 data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=Fetal Intestine Large;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Digestive life_stage Fetal track_name ROADMAP Large intestine ChromHMM consolidated chromatin states (bed4) [Life stage: Fetal] [Chromatin states]
consolidated • GM12878 NGRMPZNA5ECLA3 • ROADMAP25693563 ChromHMM GM12878 Chromatin states Show metadata Download track Track metadata identifier NGRMPZNA5ECLA3 data_source ROADMAP Download track Download number_of_intervals 473,498 bp_covered 2,839,992,423 output_type chromatin states genome_build hg38 cell_type GM12878 biosample_type Primary culture biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,808,756 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E116_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 57950fa6c91a605872def99184f86da8 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E116_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E116_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E116_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 9242d4d100e14004834e1a3fe196917e data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=GM12878 Lymphoblastoid Cells;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=Not available;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ROADMAP GM12878 ChromHMM consolidated chromatin states (bed4) [Chromatin states]
consolidated • H9 NGRMPZPYFRCTJO • ROADMAP Enhancers25693563 ChromHMM H9 Enhancer Show metadata Download track Track metadata identifier NGRMPZPYFRCTJO data_source ROADMAP_Enhancers Download track Download number_of_intervals 82,685 bp_covered 54,303,007 output_type enhancer chromatin states genome_build hg38 cell_type H9 biosample_type Stem cell biosample_term_id EFO:0003045 tissue_category Embryo encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 548,459 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E008_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz processed_file_md5 0cb871ccdf8fee27b6eb42660f483e6e wget_command wget https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E008_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz -P GADB/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/E008_15_coreMarks_hg38lift_mnemonics_enhancer.bed.gz.tbi -P GADB/Annotationtracks/ROADMAP_Enhancers/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E008_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 58488660d7226b49e4a307fc92c4af27 data_category Enhancer Genomic feature type ChromHMM consolidated enhancer chromatin states track_description version=2018;Original_cell_type=H9 Cells;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP_Enhancers.html;original_biosample_term_id=EFO:0003045;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ROADMAP_Enhancers H9 ChromHMM consolidated enhancer chromatin states (bed4) [Life stage: Embryonic] [Enhancer]
consolidated • Cardiac atrium NGRMPZUODHJWKE • ROADMAP25693563 ChromHMM Cardiac atrium Chromatin states Show metadata Download track Track metadata identifier NGRMPZUODHJWKE data_source ROADMAP Download track Download number_of_intervals 369,974 bp_covered 2,865,575,419 output_type chromatin states genome_build hg38 cell_type Cardiac atrium biosample_type Primary tissue biosample_term_id UBERON:0002081 tissue_category Heart encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody consolidated assay ChromHMM file_format bed bed4 file_size 2,131,561 downloaded_date 08/15/2018 release_date 03/30/2018 date_added_to_filer 02/20/2019 processed_file_download_url https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E104_15_coreMarks_hg38lift_mnemonics.bed.gz processed_file_md5 5b38e0d7565796bbaaa15cc112cef003 wget_command wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E104_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/E104_15_coreMarks_hg38lift_mnemonics.bed.gz.tbi -P GADB/Annotationtracks/RoadMap/ChIP-seq/bed4/hg38/ link_out_url https://www.roadmapepigenomics.org/ raw_file_url https://egg2.wustl.edu/roadmap/data/byFileType/chromhmmSegmentations/ChmmModels/coreMarks/jointModel/final/all_hg38lift.mnemonics.bedFiles.tgz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ROADMAP/ChromHMM/E104_15_coreMarks_hg38lift_mnemonics.bed.gz -P GADB/Annotationtracks/Downloads/ROADMAP/ChromHMM/ raw_file_md5 2d639129047a0d000d75cba43cba8620 data_category Chromatin states Genomic feature type ChIP-seq consolidated ChromHMM track_description version=2018;Original_cell_type=Right Atrium;schema=BED4;dataSource_pubmed_id=25693563;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ROADMAP.html;original_biosample_term_id=UBERON:0002078;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ROADMAP Cardiac atrium ChromHMM consolidated chromatin states (bed4) [Chromatin states]
COPS2 • K562 NGENC65HQ64YE2 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC65HQ64YE2 data_source ENCODE Download track Download number_of_intervals 25 bp_covered 8,457 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR130HEG biological_replicate 1 technical_replicate 1_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 673 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF744TVR.bed.gz processed_file_md5 3c05cf2ac6431afdde7dedbdad6486fc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF744TVR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF744TVR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF744TVR/@@download/ENCFF744TVR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF744TVR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c93dd606ee533b9a742f7e0fd017cf96 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91517;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-26,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq COPS2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR130HEG] [Life stage: Adult] [TF ChIP-seq peaks]
COPS2 • MCF-7 NGENC6CLJVNXGR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC6CLJVNXGR data_source ENCODE Download track Download number_of_intervals 626 bp_covered 240,384 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR173EEH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 12,353 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF628TEZ.bed.gz processed_file_md5 3a500eda00baa578b2d62bc0b63376a5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF628TEZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF628TEZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF628TEZ/@@download/ENCFF628TEZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF628TEZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b62d51b030cfb9ded47f4cd247aa4e8c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE105356;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-07,2016-09-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq COPS2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR173EEH] [Life stage: Adult] [TF ChIP-seq peaks]
COPS2 • MCF-7 NGENCE6Z4HFS5N • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCE6Z4HFS5N data_source ENCODE Download track Download number_of_intervals 531 bp_covered 203,904 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR173EEH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 10,608 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF559XCH.bed.gz processed_file_md5 4b08df706b8c1c3c8f754c835996f0a9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF559XCH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF559XCH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF559XCH/@@download/ENCFF559XCH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF559XCH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a2edbac989954a29e3d4266ef4f3a5f2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE105356;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-07,2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq COPS2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR173EEH] [Life stage: Adult] [TF ChIP-seq peaks]
COPS2 • MCF-7 NGENCRXGNOORIF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCRXGNOORIF data_source ENCODE Download track Download number_of_intervals 352 bp_covered 126,720 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR173EEH biological_replicate 2 technical_replicate 2_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 6,987 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF861XAS.bed.gz processed_file_md5 eb8c6b6e83a7c0293ea0ef170f8f63e5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF861XAS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF861XAS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF861XAS/@@download/ENCFF861XAS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF861XAS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d2442c3f334b77210aec558635954eca data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE105356;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-07,2016-09-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq COPS2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR173EEH] [Life stage: Adult] [TF ChIP-seq peaks]
COPS2 • MCF-7 NGENCTUZ62MN2S • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCTUZ62MN2S data_source ENCODE Download track Download number_of_intervals 193 bp_covered 77,200 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR173EEH biological_replicate 1 technical_replicate 1_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 3,396 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF771GGF.bed.gz processed_file_md5 745626dac9a91946ba51edac760662f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF771GGF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF771GGF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF771GGF/@@download/ENCFF771GGF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF771GGF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3967ac08177d0dee9e9a7d7f27048250 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE105356;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-07,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,integumental system;ENCODE_biosample_term_synonyms=MCF7,MCF-7 cell,MCF7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq COPS2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR173EEH] [Life stage: Adult] [TF ChIP-seq peaks]
COPS2 • K562 NGENCUDF5QT7U4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUDF5QT7U4 data_source ENCODE Download track Download number_of_intervals 33 bp_covered 11,507 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR130HEG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 882 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF068XCH.bed.gz processed_file_md5 83c097309292a6dac22901c3771b43d6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF068XCH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF068XCH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF068XCH/@@download/ENCFF068XCH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF068XCH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2130b6076ac54253410f2ff0c6dfeaf1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91517;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-26,2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq COPS2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR130HEG] [Life stage: Adult] [TF ChIP-seq peaks]
COPS2 • K562 NGENCUT654OV5E • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUT654OV5E data_source ENCODE Download track Download number_of_intervals 31 bp_covered 10,767 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR130HEG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 824 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF208PHU.bed.gz processed_file_md5 0593aee1a75c4d28a126258c65584a67 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF208PHU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF208PHU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF208PHU/@@download/ENCFF208PHU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF208PHU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ebc23f31689f8e266dbaf67224108abd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91517;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-26,2016-09-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq COPS2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR130HEG] [Life stage: Adult] [TF ChIP-seq peaks]
COPS2 • K562 NGENCVI3KDL6OX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCVI3KDL6OX data_source ENCODE Download track Download number_of_intervals 24 bp_covered 8,274 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR130HEG biological_replicate 2 technical_replicate 2_1 antibody COPS2 assay TF ChIP-seq file_format bed narrowPeak file_size 674 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF037XAL.bed.gz processed_file_md5 26555851ad0577cc0b110c4d9c370f5b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF037XAL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF037XAL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF037XAL/@@download/ENCFF037XAL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF037XAL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 58e2a245d48656c6a2309e1b27b39083 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE91517;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-26,2016-09-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq COPS2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR130HEG] [Life stage: Adult] [TF ChIP-seq peaks]
CPEB4 • K562 NGENCN7ETGFTEH • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCN7ETGFTEH data_source ENCODE Download track Download number_of_intervals 5,280 bp_covered 268,877 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR046JHH biological_replicate 1 technical_replicate 1_1 antibody CPEB4 assay eCLIP file_format bed narrowPeak file_size 80,296 downloaded_date 06/10/2020 release_date 04/29/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF903OOM.bed.gz processed_file_md5 5e85c202e24d9622f313b169cda7682f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF903OOM.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF903OOM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF903OOM/@@download/ENCFF903OOM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF903OOM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9dfa04a269e4acce1ffa7cd6edea619a data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE176767;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=700_01.basedon_700_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP CPEB4 peaks (narrowPeak) [Experiment: ENCSR046JHH] [Life stage: Adult] [RNA binding]
CPEB4 • K562 NGENCSEEO2LZGP • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCSEEO2LZGP data_source ENCODE Download track Download number_of_intervals 7,828 bp_covered 328,402 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR046JHH biological_replicate 2 technical_replicate 2_1 antibody CPEB4 assay eCLIP file_format bed narrowPeak file_size 105,963 downloaded_date 06/10/2020 release_date 04/29/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF462NKY.bed.gz processed_file_md5 6e7c380a218a551a508b5f4890209731 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF462NKY.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF462NKY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF462NKY/@@download/ENCFF462NKY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF462NKY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 07a5395915290a134738676d6c8267c2 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE176767;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=700_02.basedon_700_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP CPEB4 peaks (narrowPeak) [Experiment: ENCSR046JHH] [Life stage: Adult] [RNA binding]
CPSF6 • K562 NGENC7BQVRBQ4T • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENC7BQVRBQ4T data_source ENCODE Download track Download number_of_intervals 4,159 bp_covered 284,427 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532VUB biological_replicate 1 technical_replicate 1_1 antibody CPSF6 assay eCLIP file_format bed narrowPeak file_size 79,675 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF219UMT.bed.gz processed_file_md5 65c2afea6b5fa0c475d8ecdc80125d6a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF219UMT.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF219UMT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF219UMT/@@download/ENCFF219UMT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF219UMT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 15f6c7bc3ee84f84e40ba19d96b43329 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91849;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=258_01.basedon_258_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP CPSF6 peaks (narrowPeak) [Experiment: ENCSR532VUB] [Life stage: Adult] [RNA binding]
CPSF6 • K562 NGENCJ6JSAR7MX • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCJ6JSAR7MX data_source ENCODE Download track Download number_of_intervals 4,839 bp_covered 343,430 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR532VUB biological_replicate 2 technical_replicate 2_1 antibody CPSF6 assay eCLIP file_format bed narrowPeak file_size 89,149 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF087RUW.bed.gz processed_file_md5 65ffcce65df253eefb97d9caac290a6d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF087RUW.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF087RUW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF087RUW/@@download/ENCFF087RUW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF087RUW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 aae59d6cf1a9b0810e6ce75f2bc32e47 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91849;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=258_02.basedon_258_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP CPSF6 peaks (narrowPeak) [Experiment: ENCSR532VUB] [Life stage: Adult] [RNA binding]
Reference annotation (CRE) NGHOMJ7RUQNBFJ • HOMER20513432 Motif finding Reference annotation (CRE) TFBS Show metadata Download track Track metadata identifier NGHOMJ7RUQNBFJ data_source HOMER Download track Download number_of_intervals 223,239 bp_covered 2,678,868 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody CRE assay Motif finding file_format bed bed6+5 Homer file_size 2,445,456 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CRE_bZIP.hg38.processed.bed.gz processed_file_md5 2c3e96978545614bc87e23b194090562 wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CRE_bZIP.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CRE_bZIP.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=CRE;DNA_binding_domain=bZIP;Cell_type=Not applicable;Assay=Promoter;Origin=Not applicable;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding CRE transcription factor binding sites (bed6+5 Homer) [TFBS]
CREB1 • A549 NGENC24IPZA3XZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC24IPZA3XZ data_source ENCODE Download track Download number_of_intervals 1,873 bp_covered 442,028 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BRC biological_replicate 2 technical_replicate 2_1 antibody CREB1 assay TF ChIP-seq file_format bed narrowPeak file_size 37,470 downloaded_date 09/10/2024 release_date 02/04/2021 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF403CRO.bed.gz processed_file_md5 2053ea969a1f1a920d91298c64e57ef8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF403CRO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF403CRO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF403CRO/@@download/ENCFF403CRO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF403CRO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 00e39de52d9377553f50b0572fe30ee1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002324,FactorBook:ENCSR000BRC,GEO:GSM1010726;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-02-29;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2) TF ChIP-seq CREB1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BRC] [Life stage: Adult] [TF ChIP-seq peaks]