THP-1 NGABCE5IL3WPQV • Nasser 2021 ABC enhancer gene ABC THP-1 Chromatin interactions Show metadata identifier NGABCE5IL3WPQV data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,446 bp_covered 17,649,088 output_type enhancer-gene interactions genome_build hg38 cell_type THP-1 biosample_type Cell line biosample_term_id EFO:0001253 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,076,351 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP1-Engreitz_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 3d98428890c720f34bfa6140c7a61ac1 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP1-Engreitz_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_THP1-Engreitz_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP1-Engreitz_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/THP1-Engreitz_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 2138cb87233231ff1e6ab562664710c4 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=THP1-Engreitz;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Engreitz;biosample_type_note=needs revising;source_pubmed=33828297;source_doi=https://doi.org/10.1 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene THP-1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Dendritic cell NGABCE6ULAM5MW • Nasser 2021 ABC enhancer gene ABC Dendritic cell Chromatin interactions Show metadata identifier NGABCE6ULAM5MW data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 65,486 bp_covered 25,573,644 output_type enhancer-gene interactions genome_build hg38 cell_type Dendritic cell biosample_type In vitro differentiated cells biosample_term_id CL:0000451 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,529,836 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 9ebf1377ee61b053c8a2b98e042370da wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_li tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg3 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/dendritic_ce raw_file_md5 bd6b28ff978e1d882768e668dd316145 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=dendritic_cell_treated_with_Lipopolysaccharide_100_ng-mL_for_6_hour-Garber2017;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Garber 2017;biosample_type_note=n system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Dendritic cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
T-cell NGABCFEBGQ5DOA • Nasser 2021 ABC enhancer gene ABC T-cell Chromatin interactions Show metadata identifier NGABCFEBGQ5DOA data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 67,200 bp_covered 42,383,663 output_type enhancer-gene interactions genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Immune encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,538,164 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD3-positive_T_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 1a525ed26a150efd459075e65cd1c6d7 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD3-positive_T_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD3-positive_T_cell-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mo link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD3-positive_T_cell-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD3-positive_T_cell-Roadmap_EnhancerPredictionsFull.txt.lifted. raw_file_md5 12d4fa41269d4e3b913ed45f653a4ba1 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD3-positive_T_cell-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/1 system_category Lymphatic life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene T-cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Mesenchymal stem cell NGABCFGYRDMCWJ • Nasser 2021 ABC enhancer gene ABC Mesenchymal stem cell Chromatin interactions Show metadata identifier NGABCFGYRDMCWJ data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 58,252 bp_covered 31,764,724 output_type enhancer-gene interactions genome_build hg38 cell_type Mesenchymal stem cell biosample_type Primary cell biosample_term_id CL:0000134 tissue_category Stem Cell encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,995,180 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_Derived_Mesenchymal_Stem_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 d576cfa119d540b1902b3d47c92a7f21 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_Derived_Mesenchymal_Stem_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by- tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_H1_Derived_Mesenchymal_Stem_Cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/H1_Derived_Mesenchymal_Stem_Cells-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/H1_Derived_Mesenchymal_Stem_Cells-Roadmap_Enhance raw_file_md5 16c5764c87d73d2751dda7c1f0671be0 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=H1_Derived_Mesenchymal_Stem_Cells-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=htt system_category Stem Cell life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Mesenchymal stem cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABCFKHSTLBS7 • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABCFKHSTLBS7 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,262 bp_covered 23,090,839 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,568,928 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_RPMI_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 e60cf66660d475021d1290931943af80 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_RPMI_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_RPMI_d1-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_RPMI_d1-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_wi raw_file_md5 6bfc47985862a69ee114ad16aaa1f63a data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_RPMI_d1-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed= system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Panc1 NGABCFY6JXOITY • Nasser 2021 ABC enhancer gene ABC Panc1 Chromatin interactions Show metadata identifier NGABCFY6JXOITY data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 61,248 bp_covered 31,998,380 output_type enhancer-gene interactions genome_build hg38 cell_type Panc1 biosample_type Cell line biosample_term_id EFO:0002713 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,026,605 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Panc1-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 86e624be9f705c020054cb6a111a2550 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Panc1-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_inte tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_Panc1-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Panc1-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/Panc1-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 ebfdc628257b929464af3ffb0d1c5840 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=Panc1-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Panc1 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
CD14+ monocyte NGABCFZDSXJRPO • Nasser 2021 ABC enhancer gene ABC CD14+ monocyte Chromatin interactions Show metadata identifier NGABCFZDSXJRPO data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 66,382 bp_covered 22,569,485 output_type enhancer-gene interactions genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,579,146 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 509d71760f8d99e4f957908fab8d197a wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/A tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_A link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD14-positive_monocyte_treated_wit raw_file_md5 43ec560ce83e59e152c9c1b5a27d6544 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD14-positive_monocyte_treated_with_LPS_4h-Novakovic2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Novakovic 2016;biosample_type_note=done;source_pubmed=2 system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene CD14+ monocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Erythroblast NGABCGAA5BE7FV • Nasser 2021 ABC enhancer gene ABC Erythroblast Chromatin interactions Show metadata identifier NGABCGAA5BE7FV data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 68,796 bp_covered 22,631,560 output_type enhancer-gene interactions genome_build hg38 cell_type Erythroblast biosample_type Primary cell biosample_term_id CL:0000765 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,575,847 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_erythroblast-Corces2016_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 08e9dd8da861befc75fea2c93cb49809 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_erythroblast-Corces2016_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4 tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_erythroblast-Corces2016_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/erythroblast-Corces2016_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/erythroblast-Corces2016_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 172635227280216fd72ce8302b660a5b data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=erythroblast-Corces2016;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Corces2016;biosample_type_note=needs revising;source_pubmed=27526324;source_doi=https:// system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Erythroblast ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Thymus NGABCGLTTJBOZ6 • Nasser 2021 ABC enhancer gene ABC Thymus Chromatin interactions Show metadata identifier NGABCGLTTJBOZ6 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 63,062 bp_covered 40,836,408 output_type enhancer-gene interactions genome_build hg38 cell_type Thymus biosample_type Primary tissue biosample_term_id UBERON:0002370 tissue_category Immune Organ encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,261,324 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_thymus_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 05da472bc4ef68f9463f26227043a9ec wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_thymus_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_thymus_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/thymus_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/thymus_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 e3d97fdf001cf605b99e709f0d514d8e data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=thymus_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/ system_category Lymphatic life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Thymus ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Astrocyte NGABCGLYDIFUPE • Nasser 2021 ABC enhancer gene ABC Astrocyte Chromatin interactions Show metadata identifier NGABCGLYDIFUPE data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 54,598 bp_covered 24,488,802 output_type enhancer-gene interactions genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,637,283 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_astrocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 e6696d08b34dadcea9dae2c3c97c9dbb wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_astrocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_astrocyte-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/astrocyte-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/astrocyte-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 d8e31936b225310f4d4d7ab89964c8b7 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=astrocyte-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/natur system_category Nervous life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Astrocyte ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Epithelial cell NGABCGRREIWLXT • Nasser 2021 ABC enhancer gene ABC Epithelial cell Chromatin interactions Show metadata identifier NGABCGRREIWLXT data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 58,824 bp_covered 24,947,869 output_type enhancer-gene interactions genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Male Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,949,361 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_epithelial_cell_of_prostate-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 174a8a854db3f882f35dc025f87ee3eb wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_epithelial_cell_of_prostate-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_epithelial_cell_of_prostate-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Con link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/epithelial_cell_of_prostate-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/epithelial_cell_of_prostate-ENCODE_EnhancerPredictionsFu raw_file_md5 80db786148452190085357836b54458f data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=epithelial_cell_of_prostate-ENCODE;tissue_of_origin=Prostate;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955 system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Epithelial cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Stomach NGABCHI2WI3WCH • Nasser 2021 ABC enhancer gene ABC Stomach Chromatin interactions Show metadata identifier NGABCHI2WI3WCH data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 63,932 bp_covered 29,573,070 output_type enhancer-gene interactions genome_build hg38 cell_type Stomach biosample_type Primary tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,258,345 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 71d6de0bbc696ac9ce818b9266a8f8bd wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_i tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_stomach-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/stomach-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/stomach-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 d1a683abc8e8089afb979feb7e522973 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=stomach-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/natur system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Stomach ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Large intestine NGABCHSVJGWCZQ • Nasser 2021 ABC enhancer gene ABC Large intestine Chromatin interactions Show metadata identifier NGABCHSVJGWCZQ data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 68,082 bp_covered 36,647,286 output_type enhancer-gene interactions genome_build hg38 cell_type Large intestine biosample_type Primary tissue biosample_term_id UBERON:0000059 tissue_category Digestive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,592,684 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_large_intestine_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 1f29e81544ac076649539fdc3b038e53 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_large_intestine_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_mode tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_large_intestine_fetal-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/large_intestine_fetal-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/large_intestine_fetal-Roadmap_EnhancerPredictionsFull.txt.lif raw_file_md5 5b116bc134063e8429ef4c300303354f data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=large_intestine_fetal-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org system_category Digestive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Large intestine ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Placenta NGABCHW3BTOIVK • Nasser 2021 ABC enhancer gene ABC Placenta Chromatin interactions Show metadata identifier NGABCHW3BTOIVK data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,750 bp_covered 36,512,386 output_type enhancer-gene interactions genome_build hg38 cell_type Placenta biosample_type Primary tissue biosample_term_id UBERON:0001987 tissue_category Placenta encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,237,058 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_placenta-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 669030d7393544b549a9b4ebf73a4669 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_placenta-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_placenta-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/placenta-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/placenta-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 1c7f4b16f8a28e1e95653c0d8464cfac data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=placenta-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/natu system_category Placental life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Placenta ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Uterus NGABCIUZWDZ6D6 • Nasser 2021 ABC enhancer gene ABC Uterus Chromatin interactions Show metadata identifier NGABCIUZWDZ6D6 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 60,516 bp_covered 38,408,534 output_type enhancer-gene interactions genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,029,470 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_uterus-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 309068c218f66deed20038f4dc5ebd82 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_uterus-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_uterus-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/uterus-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/uterus-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 b92fedd0a085f0291fecd282e18486d8 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=uterus-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature11 system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Uterus ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
A549 NGABCJ4ZBF2ZF5 • Nasser 2021 ABC enhancer gene ABC A549 Chromatin interactions Show metadata identifier NGABCJ4ZBF2ZF5 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 62,584 bp_covered 33,488,076 output_type enhancer-gene interactions genome_build hg38 cell_type A549 biosample_type Primary cell biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,262,507 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 d030dd1b83d34c5a1b6a25a8f3443c30 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/A549_treated_with_ethanol_0.02_pe raw_file_md5 3cf139ea325ae16c943484782a4b95a3 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=2569356 system_category Respiratory life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene A549 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
IMR-90 NGABCJ6OMGR5A5 • Nasser 2021 ABC enhancer gene ABC IMR-90 Chromatin interactions Show metadata identifier NGABCJ6OMGR5A5 data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 57,132 bp_covered 25,569,979 output_type enhancer-gene interactions genome_build hg38 cell_type IMR-90 biosample_type Primary cell biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,800,811 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_IMR90-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 f3384dcc33950f7c01f232d81fcd8e85 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_IMR90-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_int tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_IMR90-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19 link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/IMR90-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/IMR90-Roadmap_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 cf2f24183e7e7c034712b92990d02b7f data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=IMR90-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=https://doi.org/10.1038/nature1 system_category Respiratory life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene IMR-90 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Adrenal gland NGABCJDJXWJZXP • Nasser 2021 ABC enhancer gene ABC Adrenal gland Chromatin interactions Show metadata identifier NGABCJDJXWJZXP data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 63,036 bp_covered 22,554,341 output_type enhancer-gene interactions genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,278,088 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_adrenal_gland-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 e5b79def0fe2de3abf7eabf4104564d8 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_adrenal_gland-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plu tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_adrenal_gland-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/adrenal_gland-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/adrenal_gland-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 9984f57bb4c715b8bc1a0dcf7177d04d data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=adrenal_gland-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/n system_category Endocrine life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Adrenal gland ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
MCF-7 NGABCJFEYSBFYU • Nasser 2021 ABC enhancer gene ABC MCF-7 Chromatin interactions Show metadata identifier NGABCJFEYSBFYU data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 55,872 bp_covered 26,820,614 output_type enhancer-gene interactions genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 3,680,487 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF-7-ENCODE_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 6f51682cd458f4046d75ee8a6fb54994 wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF-7-ENCODE_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_inte tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_MCF-7-ENCODE_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_ link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MCF-7-ENCODE_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/MCF-7-ENCODE_EnhancerPredictionsFull.txt.lifted.bed raw_file_md5 30328a3d720533ddb9420a0e86cfa969 data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=MCF-7-ENCODE;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=ENCODE;biosample_type_note=done;source_pubmed=22955616;source_doi=https://doi.org/10.1038/nature112 system_category Reproductive life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene MCF-7 ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]
Natural killer cell NGABCJHFOSV32S • Nasser 2021 ABC enhancer gene ABC Natural killer cell Chromatin interactions Show metadata identifier NGABCJHFOSV32S data_source Nasser_2021_ABC_enhancer_gene Download track Download number_of_intervals 67,204 bp_covered 37,868,190 output_type enhancer-gene interactions genome_build hg38 cell_type Natural killer cell biosample_type Primary cell biosample_term_id CL:0000623 tissue_category Blood encode_experiment_id Not applicable biological_replicate Not reported technical_replicate Not applicable antibody Not applicable assay ABC_[Activity-by-Contact_model] file_format bed bed4+19 interact file_size 4,613,475 downloaded_date 05/21/2021 release_date 03/07/2021 date_added_to_filer 12/05/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD56-positive_natural_killer_cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz processed_file_md5 a3dce8d93d2fc0b30837c91be73de7fa wget_command wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD56-positive_natural_killer_cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by tabix_index_download wget https://filer2.niagads.org/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activity-by-Contact_model/bed4plus19_interact/hg38/formatted_output_CD56-positive_natural_killer_cells-Roadmap_EnhancerPredictionsFull_lifted.bed.gz.tbi -P FILER2/Annotationtracks/hg38_lifted/Nasser_2021_ABC/ABC_Activit link_out_url https://www.engreitzlab.org/resources raw_file_url Not applicable raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD56-positive_natural_killer_cells-Roadmap_EnhancerPredictionsFull.txt.lifted.bed -P FILER2/Annotationtracks/Downloads/Nasser_2021_ABC_enhancer_gene/lifted/CD56-positive_natural_killer_cells-Roadmap_Enhan raw_file_md5 b7f5523f7b11d5a821492c1a7afe7d2e data_category Chromatin interactions Genomic feature type ABC_[Activity-by-Contact_model] enhancer-gene interactions track_description version=2021;Original_cell_type=CD56-positive_natural_killer_cells-Roadmap;doi=https://doi.org/10.1038/s41586-021-03446-x;pubmed_id=33828297;value_description=ABC.Score as product between contact frequency and enhancer;source_name=Roadmap;biosample_type_note=done;source_pubmed=25693563;source_doi=ht system_category Cardiovascular life_stage Unknown track_name Nasser_2021_ABC_enhancer_gene Natural killer cell ABC_[Activity-by-Contact_model] enhancer-gene interactions (bed4+19 interact) [Chromatin interactions]