CREM • K562 NGFTBS6564M4DI • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBS6564M4DI data_source Factorbook Download track Download number_of_intervals 3 bp_covered 57 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR077DKV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CREM assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 403 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF324ELP_CGCSSVSHGRTGACGTCAB_filtered.bed.gz processed_file_md5 7d2b2d4226112800e3945c2e7b5f2b0a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF324ELP_CGCSSVSHGRTGACGTCAB_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF324ELP_CGCSSVSHGRTGACGTCAB_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF324ELP_CGCSSVSHGRTGACGTCAB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF324ELP_CGCSSVSHGRTGACGTCAB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8aaa1a7fb0481dd98641a4d7f026c5c0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF324ELP;ENCODE_bigBed_id=ENCFF180STA;PMID=34755879;Motif_sequence=CGCSSVSHGRTGACGTCAB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CREM transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR077DKV] [Life stage: Adult] [TFBS]
CREM • HepG2 NGFTBTGPHFT3LT • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBTGPHFT3LT data_source Factorbook Download track Download number_of_intervals 4,604 bp_covered 64,456 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR903ELW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CREM assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 66,305 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871PDU_TKACGTCAYYDSSS_sorted.bed.gz processed_file_md5 e2ff1944e709ec77c8cb183f5ab84e72 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871PDU_TKACGTCAYYDSSS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871PDU_TKACGTCAYYDSSS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871PDU_TKACGTCAYYDSSS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871PDU_TKACGTCAYYDSSS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5f8f86f94d943a16bb3dec5250d66292 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF871PDU;ENCODE_bigBed_id=ENCFF049UDY;PMID=34755879;Motif_sequence=TKACGTCAYYDSSS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CREM transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR903ELW] [Life stage: Child] [TFBS]
CREM • GM12878 NGFTBTNU5ZLC4N • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBTNU5ZLC4N data_source Factorbook Download track Download number_of_intervals 8 bp_covered 240 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR839XZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CREM assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 490 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC_filtered.bed.gz processed_file_md5 f029f2ce011e2e0f2f142029fc8c71dd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d6fbe4a01554eb173af2e4526bb5df5f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF294IGP;ENCODE_bigBed_id=ENCFF391UGE;PMID=34755879;Motif_sequence=TCGCCGACACCATAGAGGTGGGCCTTYSGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CREM transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR839XZU] [TFBS]
CREM • GM12878 NGFTBTUK5RKPQY • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBTUK5RKPQY data_source Factorbook Download track Download number_of_intervals 5,402 bp_covered 162,060 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR839XZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CREM assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 124,254 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC_sorted.bed.gz processed_file_md5 138873b627d2f22d347624214eeb829f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF294IGP_TCGCCGACACCATAGAGGTGGGCCTTYSGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d6fbe4a01554eb173af2e4526bb5df5f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF294IGP;ENCODE_bigBed_id=ENCFF391UGE;PMID=34755879;Motif_sequence=TCGCCGACACCATAGAGGTGGGCCTTYSGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CREM transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR839XZU] [TFBS]
CREM • HepG2 NGFTBUUIICRNVA • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBUUIICRNVA data_source Factorbook Download track Download number_of_intervals 12,659 bp_covered 316,475 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR903ELW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CREM assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 244,261 downloaded_date 07/10/2024 release_date 08/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871PDU_CGCRDDGSATKCTGGGADDYGTAGT_sorted.bed.gz processed_file_md5 b003fd3fc9cdb4ab1caba66b89a7e2ea wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871PDU_CGCRDDGSATKCTGGGADDYGTAGT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871PDU_CGCRDDGSATKCTGGGADDYGTAGT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871PDU_CGCRDDGSATKCTGGGADDYGTAGT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871PDU_CGCRDDGSATKCTGGGADDYGTAGT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eaa4d2283aa5c0a9a5c6d9f620c65579 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF871PDU;ENCODE_bigBed_id=ENCFF049UDY;PMID=34755879;Motif_sequence=CGCRDDGSATKCTGGGADDYGTAGT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CREM transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR903ELW] [Life stage: Child] [TFBS]
CREM • GM12878 NGFTBXSZ2532CR • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBXSZ2532CR data_source Factorbook Download track Download number_of_intervals 6,024 bp_covered 126,504 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR839XZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CREM assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 115,082 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF294IGP_CGGCGCGSNSYGATGACGTCR_sorted.bed.gz processed_file_md5 76af7f8f4e668614cc51b630d1e1898a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF294IGP_CGGCGCGSNSYGATGACGTCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF294IGP_CGGCGCGSNSYGATGACGTCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF294IGP_CGGCGCGSNSYGATGACGTCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF294IGP_CGGCGCGSNSYGATGACGTCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2908b33e0adf09ecf31225dcdfeebf47 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF294IGP;ENCODE_bigBed_id=ENCFF391UGE;PMID=34755879;Motif_sequence=CGGCGCGSNSYGATGACGTCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CREM transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR839XZU] [TFBS]
CREM • K562 NGFTBZ7IDKI2XE • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBZ7IDKI2XE data_source Factorbook Download track Download number_of_intervals 8,996 bp_covered 98,956 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR077DKV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CREM assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 125,111 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF324ELP_CCGGAAGTGVS_sorted.bed.gz processed_file_md5 d96a489a650fa0b22bf287918382e500 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF324ELP_CCGGAAGTGVS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF324ELP_CCGGAAGTGVS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF324ELP_CCGGAAGTGVS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF324ELP_CCGGAAGTGVS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cfcf2c87b268d2c55ac198f57aa7a54d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF324ELP;ENCODE_bigBed_id=ENCFF180STA;PMID=34755879;Motif_sequence=CCGGAAGTGVS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CREM transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR077DKV] [Life stage: Adult] [TFBS]
Reference annotation (Crx) NGHOMNBPAXHLU4 • HOMER20513432 Motif finding Reference annotation (Crx) TFBS Show metadata Download track Track metadata identifier NGHOMNBPAXHLU4 data_source HOMER Download track Download number_of_intervals 6,426,627 bp_covered 51,413,016 output_type transcription factor binding sites genome_build hg38 cell_type Not applicable biosample_type Not applicable biosample_term_id Not applicable tissue_category Not applicable encode_experiment_id Not applicable biological_replicate Not applicable technical_replicate Not applicable antibody Crx assay Motif finding file_format bed bed6+5 Homer file_size 59,261,179 downloaded_date 08/12/2023 release_date 10/19/2020 date_added_to_filer 12/19/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CRX_Homeobox.hg38.processed.bed.gz processed_file_md5 67a861a1188999c393fa171bc8061bbd wget_command wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CRX_Homeobox.hg38.processed.bed.gz -P GADB/Annotationtracks/Homer/bed11/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Homer/bed11/hg38/CRX_Homeobox.hg38.processed.bed.gz.tbi -P GADB/Annotationtracks/Homer/bed11/hg38/ link_out_url https://homer.ucsd.edu/homer/ raw_file_url https://homer.ucsd.edu/homer/data/motifs/homer.KnownMotifs.hg38.191020.bed.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/Homer/homer.KnownMotifs.hg38.191020.bed.gz -P GADB/Annotationtracks/Downloads/Homer/ raw_file_md5 7f59c5d4bbf50fea7476a173961ea174 data_category TFBS [Transcription Factor Binding Site] Genomic feature type HOMER transcription factor binding sites track_description version=191020;TF_name=CRX;DNA_binding_domain=Homeobox;Cell_type=Retina;Assay=ChIP-Seq;Origin=GSE20012;schema=BED6+5;dataSource_pubmed_id=20513432;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/HOMER.html;original_biosample_term_id=Not applicable;is_hg38_lifted=no system_category Not applicable life_stage Not applicable track_name HOMER Motif finding Crx transcription factor binding sites (bed6+5 Homer) [TFBS]
CSDC2 • SK-N-SH NGENCLQ4I5W777 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENCLQ4I5W777 data_source ENCODE Download track Download number_of_intervals 7,149 bp_covered 2,491,613 output_type conservative IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR474KBG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CSDC2 assay TF ChIP-seq file_format bed narrowPeak file_size 143,886 downloaded_date 06/12/2022 release_date 06/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF088UPC.bed.gz processed_file_md5 00e6ffdc3dcaafc2c41ecf9e8c410d2c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF088UPC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF088UPC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF088UPC/@@download/ENCFF088UPC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF088UPC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 953e16cf0e4efff5be97f71eebe0e2f5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE175282;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-06-30,2022-01-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1, 2) TF ChIP-seq CSDC2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR474KBG] [Life stage: Child] [TF ChIP-seq peaks]
CSDC2 • SK-N-SH NGENCNHSQH652Q • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENCNHSQH652Q data_source ENCODE Download track Download number_of_intervals 2,084 bp_covered 640,769 output_type IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR474KBG biological_replicate 2 technical_replicate 2_1 antibody CSDC2 assay TF ChIP-seq file_format bed narrowPeak file_size 42,308 downloaded_date 06/12/2022 release_date 06/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF352FUS.bed.gz processed_file_md5 4b9d6dd6f73a79b310fcb340b0d38f6d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF352FUS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF352FUS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF352FUS/@@download/ENCFF352FUS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF352FUS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ecdd88c8fe867b572efacdbc80089c46 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE175282;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-06-30,2022-01-25;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 2) TF ChIP-seq CSDC2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR474KBG] [Life stage: Child] [TF ChIP-seq peaks]
CSDC2 • SK-N-SH NGENCO47AAIRWP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENCO47AAIRWP data_source ENCODE Download track Download number_of_intervals 4,160 bp_covered 1,336,976 output_type IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR474KBG biological_replicate 1 technical_replicate 1_1 antibody CSDC2 assay TF ChIP-seq file_format bed narrowPeak file_size 83,632 downloaded_date 06/12/2022 release_date 06/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF089SOG.bed.gz processed_file_md5 2c7df858377224801474f1232f4addf6 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF089SOG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF089SOG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF089SOG/@@download/ENCFF089SOG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF089SOG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1f4fb619f265d459c17a470282cb1f8e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE175282;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-06-30,2022-01-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1) TF ChIP-seq CSDC2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR474KBG] [Life stage: Child] [TF ChIP-seq peaks]
CSDC2 • SK-N-SH NGENCRDHQX65CO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENCRDHQX65CO data_source ENCODE Download track Download number_of_intervals 7,813 bp_covered 2,724,999 output_type IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR474KBG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CSDC2 assay TF ChIP-seq file_format bed narrowPeak file_size 156,845 downloaded_date 06/12/2022 release_date 06/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF868MXA.bed.gz processed_file_md5 ebb1f0e0132654c9fb761a81a2c88736 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF868MXA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF868MXA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF868MXA/@@download/ENCFF868MXA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF868MXA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7a573c312adca231e386e38b7860273c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 _M all-trans-retinoic acid for 48 hours;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE175282;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2020-06-30,2022-01-25;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1, 2) TF ChIP-seq CSDC2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR474KBG] [Life stage: Child] [TF ChIP-seq peaks]
CSDE1 • K562 NGENC4Y4UXZX2N • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC4Y4UXZX2N data_source ENCODE Download track Download number_of_intervals 3,667 bp_covered 1,362,065 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR402XII biological_replicate 2 technical_replicate 2_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 72,823 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF676EWR.bed.gz processed_file_md5 5b57fda7e63ea82b5ccb1b8870503937 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF676EWR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF676EWR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF676EWR/@@download/ENCFF676EWR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF676EWR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0976121a77e5f827914b1252e575661f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE91736;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-14,2016-09-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq CSDE1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR402XII] [Life stage: Adult] [TF ChIP-seq peaks]
CSDE1 • K562 NGENC5DOAJGFQF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC5DOAJGFQF data_source ENCODE Download track Download number_of_intervals 469 bp_covered 159,923 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR626QJQ biological_replicate 2 technical_replicate 2_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 9,896 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF064IYS.bed.gz processed_file_md5 53fb59b5da9373f869bb7a7c5ea1d779 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF064IYS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF064IYS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF064IYS/@@download/ENCFF064IYS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF064IYS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c2b448dd520fad9e2625ad779576d481 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE91926;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-01,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq CSDE1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR626QJQ] [Life stage: Adult] [TF ChIP-seq peaks]
CSDE1 • K562 NGENCD55ZJGBPV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCD55ZJGBPV data_source ENCODE Download track Download number_of_intervals 1,257 bp_covered 448,936 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR626QJQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 25,858 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF209YQQ.bed.gz processed_file_md5 5ac651ab0d4e5c661f9d8a0babd38367 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF209YQQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF209YQQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF209YQQ/@@download/ENCFF209YQQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF209YQQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c7e607d76c33e7029a819b5def54900a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE91926;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-01,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CSDE1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR626QJQ] [Life stage: Adult] [TF ChIP-seq peaks]
CSDE1 • K562 NGENCE3SPESMOY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCE3SPESMOY data_source ENCODE Download track Download number_of_intervals 1,131 bp_covered 403,072 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR626QJQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 23,282 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF222DMR.bed.gz processed_file_md5 514a32c0d183c73c516f1303e65d56d7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF222DMR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF222DMR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF222DMR/@@download/ENCFF222DMR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF222DMR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ed8b668cf4fc0ee4a3c0f1e57925d695 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE91926;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-01,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CSDE1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR626QJQ] [Life stage: Adult] [TF ChIP-seq peaks]
CSDE1 • MCF-7 NGENCH32MHMVC3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCH32MHMVC3 data_source ENCODE Download track Download number_of_intervals 945 bp_covered 313,002 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR116QUR biological_replicate 1 technical_replicate 1_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 18,749 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF183EGJ.bed.gz processed_file_md5 5b57177a308f5bf1fcb443b8b8e09391 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF183EGJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF183EGJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF183EGJ/@@download/ENCFF183EGJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF183EGJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5d736659247ecfb79f07b6494de4afaa data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE105291;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-07,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq CSDE1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR116QUR] [Life stage: Adult] [TF ChIP-seq peaks]
CSDE1 • MCF-7 NGENCHHDLHSP3H • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCHHDLHSP3H data_source ENCODE Download track Download number_of_intervals 373 bp_covered 126,820 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR116QUR biological_replicate 2 technical_replicate 2_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 7,379 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF670LKL.bed.gz processed_file_md5 3e84ec19ea3581854d584b23ab843852 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF670LKL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF670LKL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF670LKL/@@download/ENCFF670LKL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF670LKL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 40db91493ea1caf4462a7fd07557491b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE105291;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-06-07,2016-09-20;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq CSDE1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR116QUR] [Life stage: Adult] [TF ChIP-seq peaks]
CSDE1 • K562 NGENCK4HM65PR7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCK4HM65PR7 data_source ENCODE Download track Download number_of_intervals 488 bp_covered 161,489 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR626QJQ biological_replicate 1 technical_replicate 1_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 10,277 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF023UPN.bed.gz processed_file_md5 c7db588e58c72df7874f3f4d187dad78 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF023UPN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF023UPN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF023UPN/@@download/ENCFF023UPN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF023UPN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2621c63566dd4c977a6456b8381388dc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE91926;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-09-01,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq CSDE1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR626QJQ] [Life stage: Adult] [TF ChIP-seq peaks]
CSDE1 • K562 NGENCQPSHTMH46 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCQPSHTMH46 data_source ENCODE Download track Download number_of_intervals 3,452 bp_covered 1,258,570 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR402XII biological_replicate 1 technical_replicate 1_1 antibody CSDE1 assay TF ChIP-seq file_format bed narrowPeak file_size 69,464 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF752NGP.bed.gz processed_file_md5 bd192bf3765c89f5f305dc2ba4667814 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF752NGP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF752NGP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF752NGP/@@download/ENCFF752NGP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF752NGP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0a0f77574fd60bf09fff5f7e020355a2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE91736;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-14,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq CSDE1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR402XII] [Life stage: Adult] [TF ChIP-seq peaks]