CSTF2T • K562 NGENCOTIMWW4NH • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCOTIMWW4NH data_source ENCODE Download track Download number_of_intervals 27,179 bp_covered 1,670,304 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR840DRD biological_replicate 1 technical_replicate 1_1 antibody CSTF2T assay eCLIP file_format bed narrowPeak file_size 463,558 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF775WUQ.bed.gz processed_file_md5 e69923f86a4e7bd6989cd997dcc8f03a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF775WUQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF775WUQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF775WUQ/@@download/ENCFF775WUQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF775WUQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2bbd839b161b4156c704860b5acd1fc5 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92096;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=275_01.basedon_275_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP CSTF2T peaks (narrowPeak) [Experiment: ENCSR840DRD] [Life stage: Adult] [RNA binding]
CSTF2T • HepG2 NGENCRRWSM45YB • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCRRWSM45YB data_source ENCODE Download track Download number_of_intervals 52,943 bp_covered 2,848,826 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR919HSE biological_replicate 1 technical_replicate 1_1 antibody CSTF2T assay eCLIP file_format bed narrowPeak file_size 993,948 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF478SRR.bed.gz processed_file_md5 1c92bc85c4ff352acf290de6590d3a6e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF478SRR.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF478SRR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF478SRR/@@download/ENCFF478SRR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF478SRR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f325ff4fcdc0f9ff800727ffa0259f92 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:CSTF2T,GEO:GSE92163;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=292_01.basedon_292_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP CSTF2T peaks (narrowPeak) [Experiment: ENCSR919HSE] [Life stage: Child] [RNA binding]
CTBP1 • K562 NGENCEPVWKW7KB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCEPVWKW7KB data_source ENCODE Download track Download number_of_intervals 16,834 bp_covered 6,344,780 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR201NQZ biological_replicate 2 technical_replicate 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 326,779 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543ZCI.bed.gz processed_file_md5 281fdaf92f77c0be918dd338475e4d8f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543ZCI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF543ZCI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF543ZCI/@@download/ENCFF543ZCI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF543ZCI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a72afecf01262b8f0b254675cc3010c3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105285;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR201NQZ] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • K562 NGENCF5NFZDS52 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCF5NFZDS52 data_source ENCODE Download track Download number_of_intervals 44,274 bp_covered 19,896,821 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR201NQZ biological_replicate 1 technical_replicate 1_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 870,155 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF046YMB.bed.gz processed_file_md5 82821de6170eb1ed457433ec008cad5a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF046YMB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF046YMB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF046YMB/@@download/ENCFF046YMB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF046YMB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fa7a3125e08ac1c4e7ebc555bf91b672 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105285;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR201NQZ] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • MCF-7 NGENCGIVKR2IFL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCGIVKR2IFL data_source ENCODE Download track Download number_of_intervals 19,545 bp_covered 7,027,942 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR636EYA biological_replicate 1 technical_replicate 1_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 377,188 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF907COW.bed.gz processed_file_md5 bafdda60557c567c1e11b99944da51f4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF907COW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF907COW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF907COW/@@download/ENCFF907COW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF907COW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4e0ffb0ef93fb412c801f1ad674dcdf1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91938;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-21,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR636EYA] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • HEK293T NGENCIQF6UNTRJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENCIQF6UNTRJ data_source ENCODE Download track Download number_of_intervals 6,064 bp_covered 1,890,041 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR237TFX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 121,013 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF492VBY.bed.gz processed_file_md5 bbaf8f412a2276336abf5279704efd7a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF492VBY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF492VBY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF492VBY/@@download/ENCFF492VBY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF492VBY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 33b461db1fd6f3f8408fa7a6a51a5552 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE91601;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2016-11-01;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 1, 2) TF ChIP-seq CTBP1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR237TFX] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTBP1 • K562 NGENCJQYRPYDRI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCJQYRPYDRI data_source ENCODE Download track Download number_of_intervals 46,794 bp_covered 22,434,397 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR201NQZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 907,882 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF403WPG.bed.gz processed_file_md5 debf251797092f171177cb744552a4bd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF403WPG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF403WPG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF403WPG/@@download/ENCFF403WPG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF403WPG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a9a2411b73cbfcf3d9e0589ec631ead1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105285;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR201NQZ] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • HEK293T NGENCLHNRKTYFL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENCLHNRKTYFL data_source ENCODE Download track Download number_of_intervals 2,817 bp_covered 839,613 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR237TFX biological_replicate 1 technical_replicate 1_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 56,284 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF523LJO.bed.gz processed_file_md5 79738b43de7a297912bfe5397e28c0b5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF523LJO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF523LJO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF523LJO/@@download/ENCFF523LJO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF523LJO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 06fb4bbf4a33ee548f51d4b504dcf25e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE91601;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2016-11-01;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 1) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR237TFX] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTBP1 • HEK293T NGENCQWSU6B7HI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENCQWSU6B7HI data_source ENCODE Download track Download number_of_intervals 6,986 bp_covered 2,021,408 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR237TFX biological_replicate 2 technical_replicate 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 135,142 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF772IOP.bed.gz processed_file_md5 e7787a4d2f72a90056ea53757a01db4f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF772IOP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF772IOP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF772IOP/@@download/ENCFF772IOP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF772IOP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bae3e8b6a55b6433ba3abe1751e77878 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE91601;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2016-11-01;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 2) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR237TFX] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTBP1 • MCF-7 NGENCQXG7Y25ME • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCQXG7Y25ME data_source ENCODE Download track Download number_of_intervals 28,085 bp_covered 10,233,321 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR636EYA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 553,001 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF969VBY.bed.gz processed_file_md5 01f646db22e7940b82145f737bbd1b3f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF969VBY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF969VBY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF969VBY/@@download/ENCFF969VBY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF969VBY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0029655fc8c753eb78dd34fd1b8f8998 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91938;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-21,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR636EYA] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • HEK293T NGENCRNUIQSFJW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293T TF Show metadata Download track Track metadata identifier NGENCRNUIQSFJW data_source ENCODE Download track Download number_of_intervals 7,754 bp_covered 2,447,671 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR237TFX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 153,531 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF003PDY.bed.gz processed_file_md5 1f8b793e8391be39f8252dc2a602621a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF003PDY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF003PDY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF003PDY/@@download/ENCFF003PDY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF003PDY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4601023d44835fa25de120e0749395cd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293T;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=NR;External_resources=GEO:GSE91601;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2016-11-01;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293T;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293T (repl. 1, 2) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR237TFX] [Life stage: Embryonic] [TF ChIP-seq peaks]
CTBP1 • K562 NGENCYDLN5UNHJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCYDLN5UNHJ data_source ENCODE Download track Download number_of_intervals 37,034 bp_covered 17,271,197 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR201NQZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 722,584 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF807BAA.bed.gz processed_file_md5 7d51034ade54c2bd49a488fe4b923b42 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF807BAA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF807BAA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF807BAA/@@download/ENCFF807BAA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF807BAA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 baf0c11acc3588b101d04742ba38cbda data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105285;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-11-17,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CTBP1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR201NQZ] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • MCF-7 NGENCYYYNFNYLH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCYYYNFNYLH data_source ENCODE Download track Download number_of_intervals 16,458 bp_covered 5,613,759 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR636EYA biological_replicate 2 technical_replicate 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 321,164 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF220LBZ.bed.gz processed_file_md5 6371202603af84cc3f51efb875fe3741 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF220LBZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF220LBZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF220LBZ/@@download/ENCFF220LBZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF220LBZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f33234f7a0d59b6a06386013f12cb38e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91938;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-21,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq CTBP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR636EYA] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • MCF-7 NGENCZR5UUEGEP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCZR5UUEGEP data_source ENCODE Download track Download number_of_intervals 25,589 bp_covered 9,208,823 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR636EYA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay TF ChIP-seq file_format bed narrowPeak file_size 506,982 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF270IFE.bed.gz processed_file_md5 2388ef6d2ff416336295273739505760 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF270IFE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF270IFE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF270IFE/@@download/ENCFF270IFE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF270IFE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 20af00c19a9080719d34bf0f25b078e0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91938;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-21,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq CTBP1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR636EYA] [Life stage: Adult] [TF ChIP-seq peaks]
CTBP1 • HEK293T NGFTB4AIJEIC4A • Factorbook34755879 Motif finding HEK293T TFBS Show metadata Download track Track metadata identifier NGFTB4AIJEIC4A data_source Factorbook Download track Download number_of_intervals 2,180 bp_covered 23,980 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR237TFX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 32,018 downloaded_date 07/10/2024 release_date 11/17/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF328TAN_DWTTTATKRSH_sorted.bed.gz processed_file_md5 efa01d4db513845090f405a1ccfc1274 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF328TAN_DWTTTATKRSH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF328TAN_DWTTTATKRSH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF328TAN_DWTTTATKRSH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF328TAN_DWTTTATKRSH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b8213867d6cf739b808538092b063caf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293T;Original_cell_type=HEK293T;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF328TAN;ENCODE_bigBed_id=ENCFF003PDY;PMID=34755879;Motif_sequence=DWTTTATKRSH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293T (repl. 1, 2) Motif finding CTBP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR237TFX] [TFBS]
CTBP1 • MCF-7 NGFTBCB2BI52FO • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBCB2BI52FO data_source Factorbook Download track Download number_of_intervals 6,122 bp_covered 91,830 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR636EYA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 102,191 downloaded_date 07/10/2024 release_date 04/21/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF882ZZZ_MAGGTCAVVGTGMCC_sorted.bed.gz processed_file_md5 75592105fb2b7ac5569050fb1af61e40 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF882ZZZ_MAGGTCAVVGTGMCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF882ZZZ_MAGGTCAVVGTGMCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF882ZZZ_MAGGTCAVVGTGMCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF882ZZZ_MAGGTCAVVGTGMCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4df62373f138bb337309d6440fdc6f50 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF882ZZZ;ENCODE_bigBed_id=ENCFF969VBY;PMID=34755879;Motif_sequence=MAGGTCAVVGTGMCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTBP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR636EYA] [Life stage: Adult] [TFBS]
CTBP1 • HEK293T NGFTBETTIYADOE • Factorbook34755879 Motif finding HEK293T TFBS Show metadata Download track Track metadata identifier NGFTBETTIYADOE data_source Factorbook Download track Download number_of_intervals 2,016 bp_covered 22,176 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293T biosample_type Cell line biosample_term_id EFO:0001184 tissue_category Kidney encode_experiment_id ENCSR237TFX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 30,330 downloaded_date 07/10/2024 release_date 11/17/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF328TAN_YYCCTGCTGKG_sorted.bed.gz processed_file_md5 bdb3890412dd28bd0af1624463f436d6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF328TAN_YYCCTGCTGKG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF328TAN_YYCCTGCTGKG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF328TAN_YYCCTGCTGKG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF328TAN_YYCCTGCTGKG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 17e326907533c8fefd3c0ed8abe3b86b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293T;Original_cell_type=HEK293T;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF328TAN;ENCODE_bigBed_id=ENCFF003PDY;PMID=34755879;Motif_sequence=YYCCTGCTGKG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001184;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293T (repl. 1, 2) Motif finding CTBP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR237TFX] [TFBS]
CTBP1 • K562 NGFTBR7AWLFIF7 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBR7AWLFIF7 data_source Factorbook Download track Download number_of_intervals 22,540 bp_covered 338,100 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR201NQZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 314,682 downloaded_date 07/10/2024 release_date 11/17/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_CTSCWTCMYYWKCWK_sorted.bed.gz processed_file_md5 290c832b96af3ddedaf8726b47de2f50 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_CTSCWTCMYYWKCWK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_CTSCWTCMYYWKCWK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF782PIZ_CTSCWTCMYYWKCWK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF782PIZ_CTSCWTCMYYWKCWK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8d8280714156f41ab1af06f5af9b0533 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF782PIZ;ENCODE_bigBed_id=ENCFF403WPG;PMID=34755879;Motif_sequence=CTSCWTCMYYWKCWK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTBP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR201NQZ] [Life stage: Adult] [TFBS]
CTBP1 • K562 NGFTBRW2MEC3SN • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRW2MEC3SN data_source Factorbook Download track Download number_of_intervals 11,529 bp_covered 115,290 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR201NQZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 133,196 downloaded_date 07/10/2024 release_date 11/17/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_RSAGATAAGR_sorted.bed.gz processed_file_md5 ffef956ca9a0bb22333e7972cc2bfbbe wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_RSAGATAAGR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_RSAGATAAGR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF782PIZ_RSAGATAAGR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF782PIZ_RSAGATAAGR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ccac48d371438898982c4a5fadead720 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF782PIZ;ENCODE_bigBed_id=ENCFF403WPG;PMID=34755879;Motif_sequence=RSAGATAAGR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTBP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR201NQZ] [Life stage: Adult] [TFBS]
CTBP1 • K562 NGFTBUPLKSZNZX • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBUPLKSZNZX data_source Factorbook Download track Download number_of_intervals 10,978 bp_covered 87,824 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR201NQZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTBP1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 101,511 downloaded_date 07/10/2024 release_date 11/17/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_MTGAGTCA_sorted.bed.gz processed_file_md5 5fda22c203d9bcfe81351ec824f12dbb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_MTGAGTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782PIZ_MTGAGTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF782PIZ_MTGAGTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF782PIZ_MTGAGTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3d37e9e3614f0261c5f7c3066d390186 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF782PIZ;ENCODE_bigBed_id=ENCFF403WPG;PMID=34755879;Motif_sequence=MTGAGTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTBP1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR201NQZ] [Life stage: Adult] [TFBS]