CTCF • Skin NGENC6SAQYBGQZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Skin TF Show metadata Download track Track metadata identifier NGENC6SAQYBGQZ data_source ENCODE Download track Download number_of_intervals 31,498 bp_covered 11,556,736 output_type IDR thresholded peaks genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR485VQV biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 549,866 downloaded_date 06/12/2022 release_date 09/23/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF266CTJ.bed.gz processed_file_md5 ea7a7b3fd42f13564692ecfb73df2247 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF266CTJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF266CTJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF266CTJ/@@download/ENCFF266CTJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF266CTJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bd8152087e652c9b569f608130f7dcbb data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens suprapubic skin tissue male adult (37 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 37 years;Reference=NR;External_resources=GEO:GSE139782,FactorBook:ENCSR485VQV;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2019-09-11,2019-09-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=suprapubic skin;ENCODE_cell_slims=NR;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE Skin (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR485VQV] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • GM13976 NGENC6TETNLYJV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM13976 TF Show metadata Download track Track metadata identifier NGENC6TETNLYJV data_source ENCODE Download track Download number_of_intervals 29,758 bp_covered 4,463,700 output_type IDR thresholded peaks genome_build hg38 cell_type GM13976 biosample_type Cell line biosample_term_id EFO:0005345 tissue_category Blood encode_experiment_id ENCSR000DKZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 532,369 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF747ELU.bed.gz processed_file_md5 fcf0ccfeee47abc6b910740ae79a51a1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF747ELU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF747ELU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF747ELU/@@download/ENCFF747ELU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF747ELU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f96ba8a93c099cdf841896327be95935 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM13976;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=unknown 20 years;Reference=NR;External_resources=GEO:GSM1006885,UCSC-ENCODE-hg19:wgEncodeEH003448,FactorBook:ENCSR000DKZ,SCREEN-GRCh38:GM13976;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2012-08-27;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM13976;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005345;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE GM13976 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DKZ] [TF ChIP-seq peaks]
CTCF • GM12872 NGENC6TM7LH5NR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12872 TF Show metadata Download track Track metadata identifier NGENC6TM7LH5NR data_source ENCODE Download track Download number_of_intervals 39,678 bp_covered 9,653,208 output_type IDR thresholded peaks genome_build hg38 cell_type GM12872 biosample_type Cell line biosample_term_id EFO:0001159 tissue_category Blood encode_experiment_id ENCSR000DRN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 749,829 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF769VDW.bed.gz processed_file_md5 39809f21b74adf16ca1958ace801b005 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF769VDW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF769VDW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF769VDW/@@download/ENCFF769VDW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF769VDW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 28b7a41e34256a1f0779b213e5754f6d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12872;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000DRN,GEO:GSM749694,UCSC-ENCODE-hg19:wgEncodeEH000449;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-03-17;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12872;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;Bio_rep=1, 2, 3;Tech_rep=1_1, 2_1, 3_1;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001159;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE GM12872 (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DRN] [TF ChIP-seq peaks]
CTCF • HCT116 NGENC6U5HT2UAM • ENCODE22955616 | 41168159 | 31713622 ChIA-PET HCT116 Chromatin interactions Show metadata Download track Track metadata identifier NGENC6U5HT2UAM data_source ENCODE Download track Download number_of_intervals 1,444,024 bp_covered 1,811,049,207 output_type chromatin interactions genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR263OBH biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 52,185,558 downloaded_date 09/20/2025 release_date 02/03/2022 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF801VZT.bed.gz processed_file_md5 d7d53b7b4dcb667683edb9e8471c2266 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF801VZT.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF801VZT.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF801VZT/@@download/ENCFF801VZT.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF801VZT.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 f9af1bce6fc26f1c250b4ed9ec8d165b data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 _M 5-Phenyl-1H-indole-3-acetic acid for 6 hours;Lab=Charles Lee;ENCODE_internal_tags=Degron;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE242659;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2022-02-03;Submitted_track_name=LHH0225.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=Lab custom GRCh38;GM=[Method:CRISPR|Category:Insertion];Fragmentation_method=sonication (Branson Sonifier 250);Library_size=300-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR263OBH] [Life stage: Adult] [Chromatin interactions]
CTCF • T-cell NGENC6UC762CNI • ENCODE22955616 | 41168159 | 31713622 ChIA-PET T-cell Chromatin interactions Show metadata Download track Track metadata identifier NGENC6UC762CNI data_source ENCODE Download track Download number_of_intervals 2,443,594 bp_covered 2,511,250,744 output_type chromatin interactions genome_build hg38 cell_type T-cell biosample_type Primary cell biosample_term_id CL:0000084 tissue_category Immune encode_experiment_id ENCSR411UEL biological_replicate 1 technical_replicate 1_2 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 104,863,486 downloaded_date 09/20/2025 release_date 05/24/2022 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF754OVC.bed.gz processed_file_md5 51e96a9ffcd5c1b72d381568a9a50f54 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF754OVC.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF754OVC.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF754OVC/@@download/ENCFF754OVC.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF754OVC.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 27bdb111002fa9599802b01bac54ce79 data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens activated T-cell male adult (35 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours;Lab=Charles Lee;ENCODE_internal_tags=NR;Life_stage_age=adult 35 years;Reference=NR;External_resources=GEO:GSE242624;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2022-06-29;Submitted_track_name=LHT1002.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=false;ENCODE_biosample_term_name=activated T-cell;ENCODE_cell_slims=T cell,leukocyte,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=300-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=NTR:0000537;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name ENCODE T-cell (repl. 1) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR411UEL] [Life stage: Adult] [Chromatin interactions]
CTCF • HCT116 NGENC6UGVV62VR • ENCODE22955616 | 41168159 | 31713622 ChIA-PET HCT116 Chromatin interactions Show metadata Download track Track metadata identifier NGENC6UGVV62VR data_source ENCODE Download track Download number_of_intervals 552,768 bp_covered 686,127,253 output_type chromatin interactions genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR278IZK biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed bed4+19 interact file_size 18,302,099 downloaded_date 09/20/2025 release_date 03/31/2021 date_added_to_filer 10/27/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF431BUN.bed.gz processed_file_md5 2bc5e59a57924cd3cc14b019d574a095 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF431BUN.bed.gz -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/formatted_output_ENCFF431BUN.bed.gz.tbi -P FILER2/Annotationtracks/ENCODE/loops/ChIA-PET/bed4plus19_interact/hg38/ link_out_url https://www.encodeproject.org/ raw_file_url https://www.encodeproject.org/files/ENCFF431BUN/@@download/ENCFF431BUN.bedpe.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ENCFF431BUN.bedpe.gz -P FILER2/Annotationtracks/Downloads/ENCODE/chromatin_interaction/ raw_file_md5 84154f286defe8a7f6ea183bb524fe2f data_category Chromatin interactions Genomic feature type ChIA-PET chromatin interactions track_description version=2024;Biosample_summary=Homo sapiens HCT116;Lab=Charles Lee;ENCODE_internal_tags=NR;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE176973;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2021-04-06;Submitted_track_name=LHH0127V.e500.clusters.cis.BE3.gz;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT-116 cell,HCT116 cell;Analysis_title=Lab custom GRCh38;GM=NR;Fragmentation_method=sonication (Branson Sonifier 250);Library_size=300-600;schema=BED4+19;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 2) ChIA-PET CTCF chromatin interactions (bed4+19 interact) [Experiment: ENCSR278IZK] [Life stage: Adult] [Chromatin interactions]
CTCF • Panc1 NGENC6VQAD6WKQ • ENCODE22955616 | 41168159 | 31713622 ChIA-PET Panc1 Chromatin interactions Show metadata Download track Track metadata identifier NGENC6VQAD6WKQ data_source ENCODE Download track Download number_of_intervals 228,130 bp_covered 83,160,042 output_type peaks genome_build hg38 cell_type Panc1 biosample_type Cell line biosample_term_id EFO:0002713 tissue_category Pancreas encode_experiment_id ENCSR145PYF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay ChIA-PET file_format bed narrowPeak file_size 5,738,391 downloaded_date 05/15/2024 release_date 05/05/2022 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF507DZI.bed.gz processed_file_md5 a6d670d43691c0017eb064c0b672ec70 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF507DZI.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF507DZI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF507DZI/@@download/ENCFF507DZI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF507DZI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ec97de5e12bc6c4700ec01a2bd490d95 data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens Panc1;Lab=Charles Lee;ENCODE_internal_tags=Deeply Profiled;Life_stage_age=adult 56 years;Reference=NR;External_resources=GEO:GSE242623;Project=ENCODE;Award=3UM1HG009409-04S1;Experiment_date_released=2022-06-27;Submitted_track_name=LHP1003.no_input_all_peaks.maxscore1000.narrowPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Panc1;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=endocrine system;ENCODE_biosample_term_synonyms=PANC-1;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002713;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Endocrine life_stage Adult track_name ENCODE Panc1 (repl. 1) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR145PYF] [Life stage: Adult] [Chromatin interactions]
CTCF • Left ventricle NGENC6WR26SDP2 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Left ventricle TF Show metadata Download track Track metadata identifier NGENC6WR26SDP2 data_source ENCODE Download track Download number_of_intervals 44,581 bp_covered 15,870,159 output_type IDR thresholded peaks genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR350NBQ biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 775,008 downloaded_date 06/12/2022 release_date 09/16/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF244ZHV.bed.gz processed_file_md5 d6141c12381a46fd6b22a966f27f9666 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF244ZHV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF244ZHV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF244ZHV/@@download/ENCFF244ZHV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF244ZHV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8b50a891b6ada178313e9891beebab19 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens heart left ventricle tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE187246;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart left ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=left ventricle,cardiac left ventricle,left ventricle of heart,left cardiac ventricle;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE Left ventricle (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR350NBQ] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Middle frontal area BA46 NGENC6XYF5QDJS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Middle frontal area BA46 TF Show metadata Download track Track metadata identifier NGENC6XYF5QDJS data_source ENCODE Download track Download number_of_intervals 41,741 bp_covered 15,912,341 output_type IDR thresholded peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR979PTL biological_replicate 1 technical_replicate 1_1, 1_2, 1_3 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 735,783 downloaded_date 06/12/2022 release_date 09/16/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF841TWE.bed.gz processed_file_md5 68fe285856e0a1021cd7c2d4c3e5decc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF841TWE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF841TWE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF841TWE/@@download/ENCFF841TWE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF841TWE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e83a3bbb3dff08f444d208cf172da935 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 86 years;Reference=NR;External_resources=GEO:GSE187921;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2021-09-21,2021-04-12;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR979PTL] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • CD14+ monocyte NGENC6XZKAWSGR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq CD14+ monocyte TF Show metadata Download track Track metadata identifier NGENC6XZKAWSGR data_source ENCODE Download track Download number_of_intervals 19,043 bp_covered 6,097,685 output_type IDR thresholded peaks genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ATN biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 323,387 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF709UJR.bed.gz processed_file_md5 a0096283c776756034f9578078594257 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF709UJR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF709UJR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF709UJR/@@download/ENCFF709UJR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF709UJR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 313038ecb645bcd500bf0ea57cec3d49 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens CD14-positive monocyte female;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMCID:PMC7343189;External_resources=GEO:GSM1003508,SCREEN-GRCh38:CD14-positive_monocyte_female_donor_ENCDO265AAA,FactorBook:ENCSR000ATN,UCSC-ENCODE-hg19:wgEncodeEH003097;Project=ENCODE;Award=U54HG004570;Experiment_date_released=2012-08-06;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=CD14-positive monocyte;ENCODE_cell_slims=hematopoietic cell,leukocyte,monocyte,myeloid cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE CD14+ monocyte (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000ATN] [TF ChIP-seq peaks]
CTCF • Middle frontal area BA46 NGENC72KEUX2YT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Middle frontal area BA46 TF Show metadata Download track Track metadata identifier NGENC72KEUX2YT data_source ENCODE Download track Download number_of_intervals 43,961 bp_covered 16,738,106 output_type IDR thresholded peaks genome_build hg38 cell_type Middle frontal area BA46 biosample_type Tissue biosample_term_id UBERON:0006483 tissue_category Brain encode_experiment_id ENCSR841XDW biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1, 2_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 782,423 downloaded_date 06/12/2022 release_date 06/06/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF715CIB.bed.gz processed_file_md5 9f496ee3cd2a0d3203b56624762aefcd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF715CIB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF715CIB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF715CIB/@@download/ENCFF715CIB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF715CIB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 67cc4f4f270b99c7983a15843d587a2c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens with Alzheimer's disease| dorsolateral prefrontal cortex tissue female adult (90 or above years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RushAD,RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 90 or above years;Reference=NR;External_resources=GEO:GSE209336;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-06-09,2022-06-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=dorsolateral prefrontal cortex;ENCODE_cell_slims=NR;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0006483;is_hg38_lifted=no system_category Nervous life_stage Adult track_name ENCODE Middle frontal area BA46 (repl. 1, 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR841XDW] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • HCT116 NGENC73SU74SSP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HCT116 TF Show metadata Download track Track metadata identifier NGENC73SU74SSP data_source ENCODE Download track Download number_of_intervals 47,257 bp_covered 21,258,776 output_type IDR thresholded peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR979ZEO biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 822,103 downloaded_date 07/10/2025 release_date 07/20/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF122HDR.bed.gz processed_file_md5 d24014306f893ebb7a4d17a11ab887d8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF122HDR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF122HDR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF122HDR/@@download/ENCFF122HDR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF122HDR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0ab2fe227d8355f83b53d97e747069a2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,Degron,RegulomeDB_2_1;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSE231292;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-21;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT116 cell,HCT-116 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR979ZEO] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • SK-N-SH NGENC74KRBWVCP • ENCODE22955616 | 41168159 | 31713622 ChIA-PET SK-N-SH Chromatin interactions Show metadata Download track Track metadata identifier NGENC74KRBWVCP data_source ENCODE Download track Download number_of_intervals 569,730 bp_covered 224,283,686 output_type peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR514HBO biological_replicate 2 technical_replicate 2_1 antibody CTCF assay ChIA-PET file_format bed narrowPeak file_size 13,459,245 downloaded_date 06/12/2022 release_date 10/08/2020 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF050YGO.bed.gz processed_file_md5 29cbf32cc47ef5d1f21cfa316794038d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF050YGO.bed.gz -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ENCFF050YGO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/ChIA-PET/narrowPeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF050YGO/@@download/ENCFF050YGO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF050YGO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fc770935e8bc7e688624412f8f83dd77 data_category Chromatin interactions Genomic feature type ChIA-PET CTCF peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Yijun Ruan, JAX;ENCODE_internal_tags=NR;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE177127;Project=ENCODE;Award=UM1HG009409;Experiment_date_released=2021-01-25;Submitted_track_name=LHS0003H.no_input_all_peaks.maxscore1000.narrowPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no;narrowPeak_filter=qValueLog10 system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 2) ChIA-PET CTCF peaks (narrowPeak) [Experiment: ENCSR514HBO] [Life stage: Child] [Chromatin interactions]
CTCF • A549 NGENC765MJCRLW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC765MJCRLW data_source ENCODE Download track Download number_of_intervals 43,739 bp_covered 16,771,303 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR173IEA biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 793,172 downloaded_date 09/10/2024 release_date 10/02/2020 date_added_to_filer 10/01/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF796EIA.bed.gz processed_file_md5 30c91db6171eb7485aa849c8a834c50b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF796EIA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF796EIA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF796EIA/@@download/ENCFF796EIA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF796EIA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 566735ab82c8a65e880c216cc7b9dc36 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Lab=Tim Reddy, Duke;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSE92789,FactorBook:ENCSR173IEA;Project=GGR;Award=U01HG007900;Experiment_date_released=2016-12-20;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2, 3) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR173IEA] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • MCF-7 NGENC766ZUHQHQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENC766ZUHQHQ data_source ENCODE Download track Download number_of_intervals 65,851 bp_covered 12,489,387 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMS biological_replicate 2 technical_replicate 2_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,134,008 downloaded_date 07/10/2025 release_date 09/26/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF658YTJ.bed.gz processed_file_md5 87214917f85cbdb590c697cf318da18f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF658YTJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF658YTJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF658YTJ/@@download/ENCFF658YTJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF658YTJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 8197e5f22fa621f7b79df7f076c7a671 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7 treated with 100 nM 17_-estradiol for 45 minutes;Lab=Vishwanath Iyer, UTA;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR000DMS,GEO:GSM822309,UCSC-ENCODE-hg19:wgEncodeEH001131,SCREEN-GRCh38:MCF-7_treated_with_17beta-estradiol;Project=ENCODE;Award=U54HG004563;Experiment_date_released=2011-03-17;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DMS] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • Keratinocyte NGENC76AZVTUNM • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Keratinocyte TF Show metadata Download track Track metadata identifier NGENC76AZVTUNM data_source ENCODE Download track Download number_of_intervals 57,225 bp_covered 17,487,966 output_type IDR thresholded peaks genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR817HTJ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 1,008,041 downloaded_date 06/12/2022 release_date 10/02/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF060PZU.bed.gz processed_file_md5 95e3f59dae4af2d7bcf04072e687c396 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF060PZU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF060PZU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF060PZU/@@download/ENCFF060PZU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF060PZU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e5a96572e51d5b56a5f3e85b9d9fbc8d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days);Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_2,RegulomeDB_2_0,RegulomeDB_2_1;Life_stage_age=newborn 2-4 days;Reference=NR;External_resources=FactorBook:ENCSR817HTJ,GEO:GSE175223;Project=GGR;Award=U01HG007919;Experiment_date_released=2017-10-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=foreskin keratinocyte;ENCODE_cell_slims=keratinocyte,epithelial cell;ENCODE_system_slims=reproductive system,integumental system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name ENCODE Keratinocyte (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR817HTJ] [Life stage: Newborn] [TF ChIP-seq peaks]
CTCF • Transverse colon NGENC77M2622OA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Transverse colon TF Show metadata Download track Track metadata identifier NGENC77M2622OA data_source ENCODE Download track Download number_of_intervals 34,751 bp_covered 13,804,528 output_type IDR thresholded peaks genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR236YGF biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 625,324 downloaded_date 06/12/2022 release_date 09/24/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF867CAA.bed.gz processed_file_md5 0c703852dd54c19d2e3f1c4bd5c7a593 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF867CAA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF867CAA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF867CAA/@@download/ENCFF867CAA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF867CAA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 53062e186f02809ebc72a4d13d036e45 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens transverse colon tissue female adult (53 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,ENTEx,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=FactorBook:ENCSR236YGF,GEO:GSE142936;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2017-08-28,2016-11-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=transverse colon;ENCODE_cell_slims=NR;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=colon transversum;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE Transverse colon (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR236YGF] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • SK-N-SH NGENC7AA2YJ5QU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq SK-N-SH TF Show metadata Download track Track metadata identifier NGENC7AA2YJ5QU data_source ENCODE Download track Download number_of_intervals 52,559 bp_covered 18,704,463 output_type IDR thresholded peaks genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR541AMF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 960,302 downloaded_date 06/12/2022 release_date 02/02/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF517OXA.bed.gz processed_file_md5 96d91cae41f65eeff0f44074ab7a205b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF517OXA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF517OXA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF517OXA/@@download/ENCFF517OXA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF517OXA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5b8131a8be2976351bde1c55c751fe85 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens SK-N-SH;Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2;Life_stage_age=child 4 years;Reference=PMCID:PMC7343189;External_resources=GEO:GSE123217,SCREEN-GRCh38:SK-N-SH,FactorBook:ENCSR541AMF;Project=ENCODE;Award=U54HG006991;Experiment_date_released=2017-11-13,2015-08-03;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=SK-N-SH;ENCODE_cell_slims=neuroblastoma cell,cancer cell;ENCODE_system_slims=central nervous system;ENCODE_biosample_term_synonyms=SKNSH;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name ENCODE SK-N-SH (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR541AMF] [Life stage: Child] [TF ChIP-seq peaks]
CTCF • Right ventricle NGENC7B6XPVXYW • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Right ventricle TF Show metadata Download track Track metadata identifier NGENC7B6XPVXYW data_source ENCODE Download track Download number_of_intervals 39,575 bp_covered 14,226,187 output_type IDR thresholded peaks genome_build hg38 cell_type Right ventricle biosample_type Tissue biosample_term_id UBERON:0002080 tissue_category Heart encode_experiment_id ENCSR138FTN biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 698,072 downloaded_date 05/15/2024 release_date 07/20/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF063GTP.bed.gz processed_file_md5 c648c3458c52630ca8a07bedb678f4cc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF063GTP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF063GTP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF063GTP/@@download/ENCFF063GTP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF063GTP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e5dcd2d92d7a2ce5f06154ba9facfa7a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens heart right ventricle tissue male adult (54 years);Lab=Bradley Bernstein, Broad;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 54 years;Reference=NR;External_resources=GEO:GSE231131;Project=ENCODE;Award=UM1HG009390;Experiment_date_released=2022-07-21,2022-06-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=heart right ventricle;ENCODE_cell_slims=NR;ENCODE_system_slims=circulatory system;ENCODE_biosample_term_synonyms=right ventricle,right ventricle of heart,cardiac right ventricle;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002080;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE Right ventricle (repl. 1) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR138FTN] [Life stage: Adult] [TF ChIP-seq peaks]
CTCF • GM12865 NGENC7BSEJC7EU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12865 TF Show metadata Download track Track metadata identifier NGENC7BSEJC7EU data_source ENCODE Download track Download number_of_intervals 40,012 bp_covered 8,985,969 output_type IDR thresholded peaks genome_build hg38 cell_type GM12865 biosample_type Cell line biosample_term_id EFO:0005338 tissue_category Blood encode_experiment_id ENCSR000DRE biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CTCF assay TF ChIP-seq file_format bed narrowPeak file_size 710,741 downloaded_date 06/12/2022 release_date 09/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF067GFI.bed.gz processed_file_md5 29d4fd21062292822cc09d9442210518 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF067GFI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF067GFI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF067GFI/@@download/ENCFF067GFI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF067GFI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 237d92a5158d59eb08ed62ea86ecba7e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq CTCF IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12865;Lab=John Stamatoyannopoulos, UW;ENCODE_internal_tags=RegulomeDB_1_0,ccre_inputv2,RegulomeDB_2_0,RegulomeDB_2_1,ccre_inputv1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=GEO:GSM749740,UCSC-ENCODE-hg19:wgEncodeEH000448,FactorBook:ENCSR000DRE,SCREEN-GRCh38:GM12865;Project=ENCODE;Award=U54HG004592;Experiment_date_released=2011-03-17,2011-11-17;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12865;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005338;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name ENCODE GM12865 (repl. 2, 3) TF ChIP-seq CTCF IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DRE] [TF ChIP-seq peaks]