CTCF • Lung NGFTB26R7ZROPM • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTB26R7ZROPM data_source Factorbook Download track Download number_of_intervals 12 bp_covered 360 output_type transcription factor binding sites significant genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR027FSZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 616 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF354FKN_GSTGCCMYCTRGTGGHCARAVAGSSAWBBW_filtered.bed.gz processed_file_md5 63cee58f07a305acd4a62be29f3c74b5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF354FKN_GSTGCCMYCTRGTGGHCARAVAGSSAWBBW_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF354FKN_GSTGCCMYCTRGTGGHCARAVAGSSAWBBW_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF354FKN_GSTGCCMYCTRGTGGHCARAVAGSSAWBBW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF354FKN_GSTGCCMYCTRGTGGHCARAVAGSSAWBBW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3bbf4a7fe9c52048be0a0e3ad845ced1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens upper lobe of left lung tissue male adult (37 years);Original_cell_type=upper lobe of left lung;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF354FKN;ENCODE_bigBed_id=ENCFF277NLT;PMID=34755879;Motif_sequence=GSTGCCMYCTRGTGGHCARAVAGSSAWBBW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008952;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR027FSZ] [Life stage: Adult] [TFBS]
CTCF • CD14+ monocyte NGFTB275XOERV6 • Factorbook34755879 Motif finding CD14+ monocyte TFBS Show metadata Download track Track metadata identifier NGFTB275XOERV6 data_source Factorbook Download track Download number_of_intervals 421 bp_covered 6,315 output_type transcription factor binding sites significant genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ATN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,583 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF190KNC_GCCASCAGRGGGCGC_filtered.bed.gz processed_file_md5 00a4900b7a66e14ccbb879c9eb2bb859 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF190KNC_GCCASCAGRGGGCGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF190KNC_GCCASCAGRGGGCGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF190KNC_GCCASCAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF190KNC_GCCASCAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 df29010cca359cba43fe02735fd6b9d9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens CD14-positive monocyte female;Original_cell_type=CD14-positive monocyte;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF190KNC;ENCODE_bigBed_id=ENCFF590KQU;PMID=34755879;Motif_sequence=GCCASCAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook CD14+ monocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATN] [TFBS]
CTCF • HeLa-S3 NGFTB2CE7QG5X7 • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB2CE7QG5X7 data_source Factorbook Download track Download number_of_intervals 42 bp_covered 1,260 output_type transcription factor binding sites significant genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DUB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,365 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF030QAM_TSYBCYGCCMCCTRGTGGHCAMWRVKGGWM_filtered.bed.gz processed_file_md5 1fd87e905bf64b2482eb1e8511e71dbd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF030QAM_TSYBCYGCCMCCTRGTGGHCAMWRVKGGWM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF030QAM_TSYBCYGCCMCCTRGTGGHCAMWRVKGGWM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF030QAM_TSYBCYGCCMCCTRGTGGHCAMWRVKGGWM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF030QAM_TSYBCYGCCMCCTRGTGGHCAMWRVKGGWM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8679ffda6273de09b5cf8f264664242f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3 G1b phase;Original_cell_type=HeLa-S3;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF030QAM;ENCODE_bigBed_id=ENCFF626XQK;PMID=34755879;Motif_sequence=TSYBCYGCCMCCTRGTGGHCAMWRVKGGWM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUB] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTB2CHSUNW24 • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTB2CHSUNW24 data_source Factorbook Download track Download number_of_intervals 42,649 bp_covered 639,735 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR000DUS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 740,202 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_SYGCCMYCTRGTGGC_sorted.bed.gz processed_file_md5 a4141b933fb7be055e1e40fd46de6bd7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_SYGCCMYCTRGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_SYGCCMYCTRGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF757DFM_SYGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF757DFM_SYGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0fca70239095fdcf8d851d692fdef162 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens mammary epithelial cell female;Original_cell_type=mammary epithelial cell;Lab=John Stamatoyannopoulos, UW;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF757DFM;ENCODE_bigBed_id=ENCFF304CKV;PMID=34755879;Motif_sequence=SYGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUS] [TFBS]
CTCF • Gastroesophageal sphincter NGFTB2EUFEGLND • Factorbook34755879 Motif finding Gastroesophageal sphincter TFBS Show metadata Download track Track metadata identifier NGFTB2EUFEGLND data_source Factorbook Download track Download number_of_intervals 7,419 bp_covered 81,609 output_type transcription factor binding sites all genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR186NVR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 104,418 downloaded_date 07/10/2024 release_date 06/23/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF301BDF_GGAACTGCAGC_sorted.bed.gz processed_file_md5 faf1a05b72d60d4f4703fc9b65eb0e62 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF301BDF_GGAACTGCAGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF301BDF_GGAACTGCAGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF301BDF_GGAACTGCAGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF301BDF_GGAACTGCAGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3c54dd9083a167d417340888d139fb28 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue male adult (37 years);Original_cell_type=gastroesophageal sphincter;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF301BDF;ENCODE_bigBed_id=ENCFF918KPI;PMID=34755879;Motif_sequence=GGAACTGCAGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Gastroesophageal sphincter (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR186NVR] [Life stage: Adult] [TFBS]
CTCF • Pancreas NGFTB2F766VBWA • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTB2F766VBWA data_source Factorbook Download track Download number_of_intervals 28,641 bp_covered 773,307 output_type transcription factor binding sites all genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR484DDO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 644,511 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS_sorted.bed.gz processed_file_md5 71019b11d25996be4aa702daf867cc92 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7a41f7b5993f79d9fdd29c398c4de65d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens body of pancreas tissue female adult (53 years);Original_cell_type=body of pancreas;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF061ZXI;ENCODE_bigBed_id=ENCFF881RGF;PMID=34755879;Motif_sequence=CCMYCTRGTGGYCABWNVKGGNANBRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001150;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR484DDO] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTB2H3S4ZWH2 • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTB2H3S4ZWH2 data_source Factorbook Download track Download number_of_intervals 7,731 bp_covered 146,889 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR773JBP biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 145,043 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_VARNNRBGGAAYTGCAGSC_sorted.bed.gz processed_file_md5 5f8d6ffb31620aad9fda8206324ca406 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_VARNNRBGGAAYTGCAGSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_VARNNRBGGAAYTGCAGSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF848GUU_VARNNRBGGAAYTGCAGSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF848GUU_VARNNRBGGAAYTGCAGSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7b1d4d2041d12c05afc20eeb9e2b6a34 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (53 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF848GUU;ENCODE_bigBed_id=ENCFF683HYK;PMID=34755879;Motif_sequence=VARNNRBGGAAYTGCAGSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR773JBP] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTB2I5EAYKL2 • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTB2I5EAYKL2 data_source Factorbook Download track Download number_of_intervals 13,914 bp_covered 208,710 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR003SZZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 219,280 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_BDSYGCGCMTGCGCR_sorted.bed.gz processed_file_md5 fb9dd51f699088ca27344ad73855bfba wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_BDSYGCGCMTGCGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_BDSYGCGCMTGCGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF523MWC_BDSYGCGCMTGCGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF523MWC_BDSYGCGCMTGCGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4bc0e4a4b263655a2946320df5d379bd data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (51 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF523MWC;ENCODE_bigBed_id=ENCFF571ODZ;PMID=34755879;Motif_sequence=BDSYGCGCMTGCGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR003SZZ] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTB2IR2GZGRI • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB2IR2GZGRI data_source Factorbook Download track Download number_of_intervals 53,417 bp_covered 801,255 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DUG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 929,288 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_GCCASYAGRGGGCRS_sorted.bed.gz processed_file_md5 cd896387d1c86e6f522152e3db0b5323 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_GCCASYAGRGGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_GCCASYAGRGGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF119PKI_GCCASYAGRGGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF119PKI_GCCASYAGRGGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dfda08f316af503e5d297957a9e6e9e4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=John Stamatoyannopoulos, UW;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF119PKI;ENCODE_bigBed_id=ENCFF127KUP;PMID=34755879;Motif_sequence=GCCASYAGRGGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUG] [Life stage: Child] [TFBS]
CTCF • AG10803 NGFTB2KOOXJKTY • Factorbook34755879 Motif finding AG10803 TFBS Show metadata Download track Track metadata identifier NGFTB2KOOXJKTY data_source Factorbook Download track Download number_of_intervals 91 bp_covered 1,365 output_type transcription factor binding sites significant genome_build hg38 cell_type AG10803 biosample_type Cell line biosample_term_id CLO:0021511 tissue_category Skin encode_experiment_id ENCSR000DPV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,249 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF912KWD_YGCCMYCTRSTGGCC_filtered.bed.gz processed_file_md5 ff6a326b12249b9f2247989768c81259 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF912KWD_YGCCMYCTRSTGGCC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF912KWD_YGCCMYCTRSTGGCC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF912KWD_YGCCMYCTRSTGGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF912KWD_YGCCMYCTRSTGGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 21fee3aa248fe037b0ee59c6d6b01de8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG10803;Original_cell_type=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF912KWD;ENCODE_bigBed_id=ENCFF550SXU;PMID=34755879;Motif_sequence=YGCCMYCTRSTGGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021511;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG10803 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPV] [Life stage: Adult] [TFBS]
CTCF • LNCAP NGFTB2LV5GSGU4 • Factorbook34755879 Motif finding LNCAP TFBS Show metadata Download track Track metadata identifier NGFTB2LV5GSGU4 data_source Factorbook Download track Download number_of_intervals 2 bp_covered 42 output_type transcription factor binding sites significant genome_build hg38 cell_type LNCAP biosample_type Cell line biosample_term_id EFO:0002071 tissue_category Male Reproductive encode_experiment_id ENCSR673WZL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 367 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG_filtered.bed.gz processed_file_md5 c07bd1495d341125f90db16b02444373 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1305b2ad9b29aaaeb10da2dd14c6b5ec data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCAP treated with 10 nM 17_-hydroxy-5_-androstan-3-one for 4 hours;Original_cell_type=LNCAP;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF053EYR;ENCODE_bigBed_id=ENCFF797RTH;PMID=34755879;Motif_sequence=HCYYVAWDYGRCCACYAGRKG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002071;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCAP (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR673WZL] [Life stage: Adult] [TFBS]
CTCF • Neural cell NGFTB2MCH37IBB • Factorbook34755879 Motif finding Neural cell TFBS Show metadata Download track Track metadata identifier NGFTB2MCH37IBB data_source Factorbook Download track Download number_of_intervals 18,182 bp_covered 472,732 output_type transcription factor binding sites all genome_build hg38 cell_type Neural cell biosample_type In vitro differentiated cells biosample_term_id CL:0002319 tissue_category Brain encode_experiment_id ENCSR822CEA biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 324,083 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF078VTL_GCCAYCTRRTGSHSAAAGNKRAWWMT_sorted.bed.gz processed_file_md5 254ddcef7f42b1cf9b9a49890f70e3f6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF078VTL_GCCAYCTRRTGSHSAAAGNKRAWWMT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF078VTL_GCCAYCTRRTGSHSAAAGNKRAWWMT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF078VTL_GCCAYCTRRTGSHSAAAGNKRAWWMT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF078VTL_GCCAYCTRRTGSHSAAAGNKRAWWMT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b7324fcec34896b6bdd492e6d74a8d0a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens neural cell originated from H1;Original_cell_type=neural cell;Lab=Michael Snyder, Stanford;System=peripheral nervous system,central nervous system;ENCODE_BED_id=ENCFF078VTL;ENCODE_bigBed_id=ENCFF335ADI;PMID=34755879;Motif_sequence=GCCAYCTRRTGSHSAAAGNKRAWWMT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002319;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name Factorbook Neural cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR822CEA] [TFBS]
CTCF • C4-2B NGFTB2N5AXV7GU • Factorbook34755879 Motif finding C4-2B TFBS Show metadata Download track Track metadata identifier NGFTB2N5AXV7GU data_source Factorbook Download track Download number_of_intervals 121 bp_covered 2,541 output_type transcription factor binding sites significant genome_build hg38 cell_type C4-2B biosample_type Cell line biosample_term_id EFO:0006365 tissue_category Male Reproductive encode_experiment_id ENCSR460LGH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,511 downloaded_date 07/10/2024 release_date 07/21/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR_filtered.bed.gz processed_file_md5 65a5917910ba7de92955bc633224db23 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 90432bd23aaddcef3828b28760024b9b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens C4-2B;Original_cell_type=C4-2B;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF925SQE;ENCODE_bigBed_id=ENCFF982WNJ;PMID=34755879;Motif_sequence=HNYGGCCACNAGGKGGCRSYR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006365;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook C4-2B (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR460LGH] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTB2PQ32KMBK • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTB2PQ32KMBK data_source Factorbook Download track Download number_of_intervals 130 bp_covered 1,950 output_type transcription factor binding sites significant genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000DUH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,667 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF991RIU_GCCACYAGRKGGCRS_filtered.bed.gz processed_file_md5 907339fc5a525f7769c3d60d2a99f00b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF991RIU_GCCACYAGRKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF991RIU_GCCACYAGRKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF991RIU_GCCACYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF991RIU_GCCACYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ad615c4653a26643ad742631a883268c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens foreskin fibroblast male newborn;Original_cell_type=foreskin fibroblast;Lab=John Stamatoyannopoulos, UW;System=integumental system,reproductive system;ENCODE_BED_id=ENCFF991RIU;ENCODE_bigBed_id=ENCFF219EBQ;PMID=34755879;Motif_sequence=GCCACYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:1001608;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Fibroblast (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUH] [TFBS]
CTCF • Adrenal gland NGFTB2S4LCRC62 • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTB2S4LCRC62 data_source Factorbook Download track Download number_of_intervals 35,603 bp_covered 534,045 output_type transcription factor binding sites all genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR770IWO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 618,904 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_GCCASYAGRKGGCGC_sorted.bed.gz processed_file_md5 98018e6605fd2a5a3619e92ca246fa0e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_GCCASYAGRKGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_GCCASYAGRKGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SOE_GCCASYAGRKGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SOE_GCCASYAGRKGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 387687f75b9197e14f169c07c456bb24 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (53 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF059SOE;ENCODE_bigBed_id=ENCFF678WUB;PMID=34755879;Motif_sequence=GCCASYAGRKGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR770IWO] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTB2S7IUP7FZ • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB2S7IUP7FZ data_source Factorbook Download track Download number_of_intervals 10,904 bp_covered 119,944 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DUG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 151,299 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_DGGAACTGCAG_sorted.bed.gz processed_file_md5 dc77eafd0d4ca3099f532f4e26af56da wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_DGGAACTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_DGGAACTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF119PKI_DGGAACTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF119PKI_DGGAACTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1b2e0c204fa58bcca85f2d364361da0a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=John Stamatoyannopoulos, UW;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF119PKI;ENCODE_bigBed_id=ENCFF127KUP;PMID=34755879;Motif_sequence=DGGAACTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUG] [Life stage: Child] [TFBS]
CTCF • AG09309 NGFTB2SAL3HYVY • Factorbook34755879 Motif finding AG09309 TFBS Show metadata Download track Track metadata identifier NGFTB2SAL3HYVY data_source Factorbook Download track Download number_of_intervals 42,556 bp_covered 638,340 output_type transcription factor binding sites all genome_build hg38 cell_type AG09309 biosample_type Cell line biosample_term_id CLO:0021752 tissue_category Skin encode_experiment_id ENCSR000DPP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 740,751 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_GCGCCCYCTRSTGGC_sorted.bed.gz processed_file_md5 970157a825a287f5a9d26e3953d409d0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_GCGCCCYCTRSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_GCGCCCYCTRSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693KJZ_GCGCCCYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693KJZ_GCGCCCYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dd5611fc7917a43735e7a0de8bd4f984 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG09309;Original_cell_type=AG09309;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF693KJZ;ENCODE_bigBed_id=ENCFF478XPS;PMID=34755879;Motif_sequence=GCGCCCYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021752;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG09309 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPP] [Life stage: Adult] [TFBS]
CTCF • Cardiac muscle cell NGFTB2TXQM4QS3 • Factorbook34755879 Motif finding Cardiac muscle cell TFBS Show metadata Download track Track metadata identifier NGFTB2TXQM4QS3 data_source Factorbook Download track Download number_of_intervals 19,986 bp_covered 599,580 output_type transcription factor binding sites all genome_build hg38 cell_type Cardiac muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id ENCSR713SXF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 479,642 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF130TVA_GBGSCYKCYGVYGCCMYCTKGTGGMMANWG_sorted.bed.gz processed_file_md5 cdbf677e7379a30a2a8ff55594a9d168 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF130TVA_GBGSCYKCYGVYGCCMYCTKGTGGMMANWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF130TVA_GBGSCYKCYGVYGCCMYCTKGTGGMMANWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF130TVA_GBGSCYKCYGVYGCCMYCTKGTGGMMANWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF130TVA_GBGSCYKCYGVYGCCMYCTKGTGGMMANWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 31d90733079c8692fb88c25a047540e7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac muscle cell originated from RUES2;Original_cell_type=cardiac muscle cell;Lab=Bradley Bernstein, Broad;System=musculature,circulatory system;ENCODE_BED_id=ENCFF130TVA;ENCODE_bigBed_id=ENCFF777TNC;PMID=34755879;Motif_sequence=GBGSCYKCYGVYGCCMYCTKGTGGMMANWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000746;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Cardiac muscle cell (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR713SXF] [TFBS]
CTCF • Aorta NGFTB2UABL4PZR • Factorbook34755879 Motif finding Aorta TFBS Show metadata Download track Track metadata identifier NGFTB2UABL4PZR data_source Factorbook Download track Download number_of_intervals 29,959 bp_covered 449,385 output_type transcription factor binding sites all genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id ENCSR960MDF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 517,703 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF007QNG_GCCRSCAGGGGGCGC_sorted.bed.gz processed_file_md5 00576312cbcec48d766fa7ddd6b683fc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF007QNG_GCCRSCAGGGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF007QNG_GCCRSCAGGGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF007QNG_GCCRSCAGGGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF007QNG_GCCRSCAGGGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7652ac8009b630c1d6fbc56fa43ff467 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens ascending aorta tissue female adult (51 years);Original_cell_type=ascending aorta;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF007QNG;ENCODE_bigBed_id=ENCFF440JQB;PMID=34755879;Motif_sequence=GCCRSCAGGGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001496;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Aorta (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR960MDF] [Life stage: Adult] [TFBS]
CTCF • Cardiac muscle cell NGFTB2V26EZZZM • Factorbook34755879 Motif finding Cardiac muscle cell TFBS Show metadata Download track Track metadata identifier NGFTB2V26EZZZM data_source Factorbook Download track Download number_of_intervals 51,013 bp_covered 816,208 output_type transcription factor binding sites all genome_build hg38 cell_type Cardiac muscle cell biosample_type Primary cell biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id ENCSR000DTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 877,289 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_RGYGCCMYCTRGTGGC_sorted.bed.gz processed_file_md5 f5ce5f6a40f1413075789d8440dd73ea wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_RGYGCCMYCTRGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_RGYGCCMYCTRGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF229DYR_RGYGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF229DYR_RGYGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 943ffb32af228e5c141c1d96cb415c9f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac muscle cell;Original_cell_type=cardiac muscle cell;Lab=John Stamatoyannopoulos, UW;System=musculature,circulatory system;ENCODE_BED_id=ENCFF229DYR;ENCODE_bigBed_id=ENCFF728JSA;PMID=34755879;Motif_sequence=RGYGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000746;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Cardiac muscle cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTI] [TFBS]