CTCF • LNCAP NGFTB2XOKG7F4U • Factorbook34755879 Motif finding LNCAP TFBS Show metadata Download track Track metadata identifier NGFTB2XOKG7F4U data_source Factorbook Download track Download number_of_intervals 28,424 bp_covered 596,904 output_type transcription factor binding sites all genome_build hg38 cell_type LNCAP biosample_type Cell line biosample_term_id EFO:0002071 tissue_category Male Reproductive encode_experiment_id ENCSR673WZL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 453,542 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG_sorted.bed.gz processed_file_md5 ade55099f653521055b57534a2bb3198 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF053EYR_HCYYVAWDYGRCCACYAGRKG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1305b2ad9b29aaaeb10da2dd14c6b5ec data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCAP treated with 10 nM 17_-hydroxy-5_-androstan-3-one for 4 hours;Original_cell_type=LNCAP;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF053EYR;ENCODE_bigBed_id=ENCFF797RTH;PMID=34755879;Motif_sequence=HCYYVAWDYGRCCACYAGRKG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002071;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCAP (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR673WZL] [Life stage: Adult] [TFBS]
CTCF • K562 NGFTB2YLZLEYFG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB2YLZLEYFG data_source Factorbook Download track Download number_of_intervals 11,882 bp_covered 130,702 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AKO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 157,110 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF362OPG_GGAACTGCAGS_sorted.bed.gz processed_file_md5 e75a6be5b1083c10a9445375c8488e6d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF362OPG_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF362OPG_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF362OPG_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF362OPG_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b2e4080cb809dd676a01a896c690bbea data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF362OPG;ENCODE_bigBed_id=ENCFF095JYT;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKO] [Life stage: Adult] [TFBS]
CTCF • H1-hESC NGFTB2YMHXDNTW • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTB2YMHXDNTW data_source Factorbook Download track Download number_of_intervals 202 bp_covered 3,030 output_type transcription factor binding sites significant genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BNH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,373 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF023LAA_RCCRSYAGRGGGCRS_filtered.bed.gz processed_file_md5 15a2e1c8a0354494327004dfc571f247 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF023LAA_RCCRSYAGRGGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF023LAA_RCCRSYAGRGGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF023LAA_RCCRSYAGRGGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF023LAA_RCCRSYAGRGGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c3741625181d595453cac8ae6780d0dc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF023LAA;ENCODE_bigBed_id=ENCFF414GZI;PMID=34755879;Motif_sequence=RCCRSYAGRGGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNH] [TFBS]
CTCF • Vagina NGFTB2YNZ5ZSVT • Factorbook34755879 Motif finding Vagina TFBS Show metadata Download track Track metadata identifier NGFTB2YNZ5ZSVT data_source Factorbook Download track Download number_of_intervals 499 bp_covered 7,485 output_type transcription factor binding sites significant genome_build hg38 cell_type Vagina biosample_type Tissue biosample_term_id UBERON:0000996 tissue_category Female Reproductive encode_experiment_id ENCSR655ECZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,142 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF126LRK_GGCCACCAGRKGGCR_filtered.bed.gz processed_file_md5 fd2ee3a495d07553dc0256f6fca86027 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF126LRK_GGCCACCAGRKGGCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF126LRK_GGCCACCAGRKGGCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF126LRK_GGCCACCAGRKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF126LRK_GGCCACCAGRKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7b2168bd14ee6cbc9bfde11654916f20 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens vagina tissue female adult (51 years);Original_cell_type=vagina;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF126LRK;ENCODE_bigBed_id=ENCFF902RQN;PMID=34755879;Motif_sequence=GGCCACCAGRKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000996;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Vagina (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR655ECZ] [Life stage: Adult] [TFBS]
CTCF • SK-N-SH NGFTB2ZHLABGCB • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTB2ZHLABGCB data_source Factorbook Download track Download number_of_intervals 59 bp_covered 885 output_type transcription factor binding sites significant genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000EIC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 925 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF608JKY_RSYGCCMYCTGSTGG_filtered.bed.gz processed_file_md5 29cfa711afb73a318f3ed7b4089328f9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF608JKY_RSYGCCMYCTGSTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF608JKY_RSYGCCMYCTGSTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF608JKY_RSYGCCMYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF608JKY_RSYGCCMYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 83404c35e00bfff308a7eca9515f6cbf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Michael Snyder, Stanford;System=central nervous system;ENCODE_BED_id=ENCFF608JKY;ENCODE_bigBed_id=ENCFF731NJX;PMID=34755879;Motif_sequence=RSYGCCMYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000EIC] [Life stage: Child] [TFBS]
CTCF • Adrenal gland NGFTB2ZXZIKXDZ • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTB2ZXZIKXDZ data_source Factorbook Download track Download number_of_intervals 787 bp_covered 14,953 output_type transcription factor binding sites significant genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR014GSQ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 13,008 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF969MVE_GCCRCCAGGGGGCGCYVBV_filtered.bed.gz processed_file_md5 0cb6400aabeaf68930f9c8072ed2fc80 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF969MVE_GCCRCCAGGGGGCGCYVBV_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF969MVE_GCCRCCAGGGGGCGCYVBV_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF969MVE_GCCRCCAGGGGGCGCYVBV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF969MVE_GCCRCCAGGGGGCGCYVBV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8bc928c1196a4080ac3789950c49002e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (51 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF969MVE;ENCODE_bigBed_id=ENCFF282ZUL;PMID=34755879;Motif_sequence=GCCRCCAGGGGGCGCYVBV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR014GSQ] [Life stage: Adult] [TFBS]
CTCF • GM12875 NGFTB32EHTUTYI • Factorbook34755879 Motif finding GM12875 TFBS Show metadata Download track Track metadata identifier NGFTB32EHTUTYI data_source Factorbook Download track Download number_of_intervals 19,000 bp_covered 551,000 output_type transcription factor binding sites all genome_build hg38 cell_type GM12875 biosample_type Cell line biosample_term_id EFO:0001162 tissue_category Blood encode_experiment_id ENCSR000DRU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 442,162 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY_sorted.bed.gz processed_file_md5 6a9f047c2f5bf568c44fe83d9d2af487 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 28f2ba45964e16d8931fa8edfb90c1b9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12875;Original_cell_type=GM12875;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF456NUW;ENCODE_bigBed_id=ENCFF081UCQ;PMID=34755879;Motif_sequence=CYGSDGKKCYYSAGCKCCCCCTGSTGGYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001162;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12875 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRU] [TFBS]
CTCF • WI38 NGFTB32HCA6EFM • Factorbook34755879 Motif finding WI38 TFBS Show metadata Download track Track metadata identifier NGFTB32HCA6EFM data_source Factorbook Download track Download number_of_intervals 6,943 bp_covered 76,373 output_type transcription factor binding sites all genome_build hg38 cell_type WI38 biosample_type Cell line biosample_term_id EFO:0001260 tissue_category Lung encode_experiment_id ENCSR000DYB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 99,264 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF127VTB_SCTGCAGTTCC_sorted.bed.gz processed_file_md5 ba2b074e781eb45fb9fd1eaf0e7499a0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF127VTB_SCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF127VTB_SCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF127VTB_SCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF127VTB_SCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 34fd7f6459964598610bace7cde6f52e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens WI38;Original_cell_type=WI38;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF127VTB;ENCODE_bigBed_id=ENCFF841AXJ;PMID=34755879;Motif_sequence=SCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001260;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook WI38 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYB] [TFBS]
CTCF • GM23338 NGFTB34LNOKMOE • Factorbook34755879 Motif finding GM23338 TFBS Show metadata Download track Track metadata identifier NGFTB34LNOKMOE data_source Factorbook Download track Download number_of_intervals 60,747 bp_covered 911,205 output_type transcription factor binding sites all genome_build hg38 cell_type GM23338 biosample_type Induced pluripotent stem cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR932ZMX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,056,366 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226HZI_GCCACYAGRKGGCRS_sorted.bed.gz processed_file_md5 e91197336b19465eb5b37d521d4659b0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226HZI_GCCACYAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226HZI_GCCACYAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF226HZI_GCCACYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF226HZI_GCCACYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c05c261a0a654bf9fdcb722ab44c77be data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Original_cell_type=GM23338;Lab=Richard Myers, HAIB;System=integumental system;ENCODE_BED_id=ENCFF226HZI;ENCODE_bigBed_id=ENCFF410SQA;PMID=34755879;Motif_sequence=GCCACYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name Factorbook GM23338 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR932ZMX] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTB35DZZJBMJ • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTB35DZZJBMJ data_source Factorbook Download track Download number_of_intervals 10,860 bp_covered 228,060 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR000DNI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 217,763 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273TNH_WCTGCTGCCCYCTMRTGGYCA_sorted.bed.gz processed_file_md5 f4e5f13c16661d60c458d8418117c761 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273TNH_WCTGCTGCCCYCTMRTGGYCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273TNH_WCTGCTGCCCYCTMRTGGYCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF273TNH_WCTGCTGCCCYCTMRTGGYCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF273TNH_WCTGCTGCCCYCTMRTGGYCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4a1af4b0b0c08727165c4df6c4de0101 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue female adult (20 years) and female adult (30 years);Original_cell_type=spleen;Lab=Vishwanath Iyer, UTA;System=digestive system,immune system;ENCODE_BED_id=ENCFF273TNH;ENCODE_bigBed_id=ENCFF678RAG;PMID=34755879;Motif_sequence=WCTGCTGCCCYCTMRTGGYCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNI] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTB35K3DS2AM • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB35K3DS2AM data_source Factorbook Download track Download number_of_intervals 39,094 bp_covered 586,410 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DUG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 658,221 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_YBGCCASCAGGKGGC_sorted.bed.gz processed_file_md5 13c07d8cfec366ab3e5c54c8adf990f7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_YBGCCASCAGGKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF119PKI_YBGCCASCAGGKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF119PKI_YBGCCASCAGGKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF119PKI_YBGCCASCAGGKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d911ee984451e411e58722a8a66fe1d0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=John Stamatoyannopoulos, UW;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF119PKI;ENCODE_bigBed_id=ENCFF127KUP;PMID=34755879;Motif_sequence=YBGCCASCAGGKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUG] [Life stage: Child] [TFBS]
CTCF • K562 NGFTB36CBNZFV3 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB36CBNZFV3 data_source Factorbook Download track Download number_of_intervals 44,202 bp_covered 618,828 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AKO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 694,762 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF362OPG_GCCASCAGRGGGCG_sorted.bed.gz processed_file_md5 f4ad7b797cc96a8192b51e319a28e24e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF362OPG_GCCASCAGRGGGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF362OPG_GCCASCAGRGGGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF362OPG_GCCASCAGRGGGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF362OPG_GCCASCAGRGGGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 04ee341c92bd5a70b8066ef88b8aee8e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF362OPG;ENCODE_bigBed_id=ENCFF095JYT;PMID=34755879;Motif_sequence=GCCASCAGRGGGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKO] [Life stage: Adult] [TFBS]
CTCF • Lung NGFTB3ADODBYSE • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTB3ADODBYSE data_source Factorbook Download track Download number_of_intervals 10,065 bp_covered 110,715 output_type transcription factor binding sites all genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR964BKO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 137,953 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061UVF_GGWACTGCAGS_sorted.bed.gz processed_file_md5 328d5b756ca5b67fa7226b942d88fd28 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061UVF_GGWACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061UVF_GGWACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF061UVF_GGWACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF061UVF_GGWACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6810c824173c649ef9429713ae6bdb58 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens upper lobe of left lung tissue male adult (54 years);Original_cell_type=upper lobe of left lung;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF061UVF;ENCODE_bigBed_id=ENCFF374MAK;PMID=34755879;Motif_sequence=GGWACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008952;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR964BKO] [Life stage: Adult] [TFBS]
CTCF • Peyers patch NGFTB3AVMEUGSN • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTB3AVMEUGSN data_source Factorbook Download track Download number_of_intervals 45,942 bp_covered 689,130 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR419ANE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 795,286 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF631JVL_GCCACCAGGKGGCRS_sorted.bed.gz processed_file_md5 a28bd2ff608a6eab7c8da63337362575 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF631JVL_GCCACCAGGKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF631JVL_GCCACCAGGKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF631JVL_GCCACCAGGKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF631JVL_GCCACCAGGKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d29cf6fb65532e07083fbabab9be85bb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (37 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF631JVL;ENCODE_bigBed_id=ENCFF701KWW;PMID=34755879;Motif_sequence=GCCACCAGGKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR419ANE] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTB3C4PENMEE • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTB3C4PENMEE data_source Factorbook Download track Download number_of_intervals 6,659 bp_covered 199,770 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Embryo encode_experiment_id ENCSR000DVQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 161,377 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY_sorted.bed.gz processed_file_md5 e0d3893dfe6893e4bbdfecc820aa76fa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6c789950f39e5d2c311123537ea4ddd6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of villous mesenchyme;Original_cell_type=fibroblast of villous mesenchyme;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF209PDE;ENCODE_bigBed_id=ENCFF345VQO;PMID=34755879;Motif_sequence=YCCTTTGCCWGCTGGYGMVATGYTAGGCTY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002558;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVQ] [TFBS]
CTCF • Keratinocyte NGFTB3D6ZAR6X5 • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTB3D6ZAR6X5 data_source Factorbook Download track Download number_of_intervals 40,566 bp_covered 851,886 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000DNC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 811,330 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN_sorted.bed.gz processed_file_md5 1a33fde0f453af630f661d4d1d8784c0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eb74b45b6ef07b98c7fb6834e0c6ae5c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens keratinocyte female;Original_cell_type=keratinocyte;Lab=Vishwanath Iyer, UTA;System=integumental system;ENCODE_BED_id=ENCFF380TKV;ENCODE_bigBed_id=ENCFF693ZQO;PMID=34755879;Motif_sequence=YGGCCASYAGRKGGCRSYVBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNC] [TFBS]
CTCF • Keratinocyte NGFTB3FZQ6OJKC • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTB3FZQ6OJKC data_source Factorbook Download track Download number_of_intervals 43,699 bp_covered 568,087 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR036EGV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 688,321 downloaded_date 07/10/2024 release_date 10/10/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_CRSCAGRGGGCGC_sorted.bed.gz processed_file_md5 db3a9f3048643e6351f5eb31cac6cd54 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_CRSCAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_CRSCAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF645QAX_CRSCAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF645QAX_CRSCAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 781a6c8580b841207a8d8d30dc18a83d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2.5 days;Original_cell_type=foreskin keratinocyte;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;ENCODE_BED_id=ENCFF645QAX;ENCODE_bigBed_id=ENCFF246DDI;PMID=34755879;Motif_sequence=CRSCAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR036EGV] [Life stage: Newborn] [TFBS]
CTCF • Epithelium NGFTB3GFQSBLIU • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTB3GFQSBLIU data_source Factorbook Download track Download number_of_intervals 272 bp_covered 4,080 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id ENCSR697YIN biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,969 downloaded_date 07/10/2024 release_date 02/08/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF758FTM_SYGCCCYCTGSTGGM_filtered.bed.gz processed_file_md5 bd22992ac7f59683f2e218bc9ded0e33 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF758FTM_SYGCCCYCTGSTGGM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF758FTM_SYGCCCYCTGSTGGM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758FTM_SYGCCCYCTGSTGGM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758FTM_SYGCCCYCTGSTGGM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8abd43f83687e195959206d6119330ae data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens breast epithelium tissue male adult (54 years);Original_cell_type=breast epithelium;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF758FTM;ENCODE_bigBed_id=ENCFF341QWO;PMID=34755879;Motif_sequence=SYGCCCYCTGSTGGM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Epithelium (repl. 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR697YIN] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTB3GVAMPSYK • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTB3GVAMPSYK data_source Factorbook Download track Download number_of_intervals 39,034 bp_covered 585,510 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR003SZZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 670,636 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_SCGCCCCCTGGYGGC_sorted.bed.gz processed_file_md5 8ec52546add738c55cb1c5fb116d8535 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_SCGCCCCCTGGYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_SCGCCCCCTGGYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF523MWC_SCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF523MWC_SCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6a87774242384f069a891695aa3d4878 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (51 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF523MWC;ENCODE_bigBed_id=ENCFF571ODZ;PMID=34755879;Motif_sequence=SCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR003SZZ] [Life stage: Adult] [TFBS]
CTCF • Lung NGFTB3HGXJ6GE3 • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTB3HGXJ6GE3 data_source Factorbook Download track Download number_of_intervals 266 bp_covered 3,990 output_type transcription factor binding sites significant genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR970UZD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,986 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF786YIA_GCGCCCCCTGSYGGC_filtered.bed.gz processed_file_md5 c2630cb079db680cc6ad9f3cb141e050 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF786YIA_GCGCCCCCTGSYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF786YIA_GCGCCCCCTGSYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF786YIA_GCGCCCCCTGSYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF786YIA_GCGCCCCCTGSYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e8aee4a31b527e7bb01244feace1dcdf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens upper lobe of left lung tissue female adult (53 years);Original_cell_type=upper lobe of left lung;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF786YIA;ENCODE_bigBed_id=ENCFF645BXH;PMID=34755879;Motif_sequence=GCGCCCCCTGSYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008952;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR970UZD] [Life stage: Adult] [TFBS]