CTCF • Skin NGFTB3YVI4O3EE • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTB3YVI4O3EE data_source Factorbook Download track Download number_of_intervals 9,681 bp_covered 174,258 output_type transcription factor binding sites all genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR038FOS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 180,902 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF525JGP_RSYGCCCCCTGGTGGCCR_sorted.bed.gz processed_file_md5 db2c94109a3641290d61e981289c807d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF525JGP_RSYGCCCCCTGGTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF525JGP_RSYGCCCCCTGGTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF525JGP_RSYGCCCCCTGGTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF525JGP_RSYGCCCCCTGGTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6484b9125a1e0017ecb2b6ead5721b7b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens suprapubic skin tissue male adult (54 years);Original_cell_type=suprapubic skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF525JGP;ENCODE_bigBed_id=ENCFF370ILR;PMID=34755879;Motif_sequence=RSYGCCCCCTGGTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038FOS] [Life stage: Adult] [TFBS]
CTCF • GM12801 NGFTB427KNXXNW • Factorbook34755879 Motif finding GM12801 TFBS Show metadata Download track Track metadata identifier NGFTB427KNXXNW data_source Factorbook Download track Download number_of_intervals 80 bp_covered 1,600 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12801 biosample_type Cell line biosample_term_id EFO:0005353 tissue_category Blood encode_experiment_id ENCSR000DQY biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,768 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF719UZS_MWRYRRCCACYAGRKGGMKC_filtered.bed.gz processed_file_md5 cbe9a071f872d2c7977caa342154a425 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF719UZS_MWRYRRCCACYAGRKGGMKC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF719UZS_MWRYRRCCACYAGRKGGMKC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF719UZS_MWRYRRCCACYAGRKGGMKC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF719UZS_MWRYRRCCACYAGRKGGMKC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b3a348694c29bd2afadcfb36dbfdca7b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12801;Original_cell_type=GM12801;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF719UZS;ENCODE_bigBed_id=ENCFF258NJQ;PMID=34755879;Motif_sequence=MWRYRRCCACYAGRKGGMKC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005353;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12801 (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQY] [TFBS]
CTCF • Pancreas NGFTB42UI334XM • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTB42UI334XM data_source Factorbook Download track Download number_of_intervals 44,868 bp_covered 1,346,040 output_type transcription factor binding sites all genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR265PFQ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,011,037 downloaded_date 07/10/2024 release_date 11/29/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF383VPO_BGMABTNCCCVNNBYGGCCASYAGRKGGCR_sorted.bed.gz processed_file_md5 30ea64f19bc58f47879a6b6ac39aafc2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF383VPO_BGMABTNCCCVNNBYGGCCASYAGRKGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF383VPO_BGMABTNCCCVNNBYGGCCASYAGRKGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF383VPO_BGMABTNCCCVNNBYGGCCASYAGRKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF383VPO_BGMABTNCCCVNNBYGGCCASYAGRKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cfa80c0e3744b7939a06058469fcc6fa data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens body of pancreas tissue male adult (54 years);Original_cell_type=body of pancreas;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF383VPO;ENCODE_bigBed_id=ENCFF269EDN;PMID=34755879;Motif_sequence=BGMABTNCCCVNNBYGGCCASYAGRKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001150;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR265PFQ] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTB432GIQLHZ • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTB432GIQLHZ data_source Factorbook Download track Download number_of_intervals 11,973 bp_covered 131,703 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id ENCSR000DVH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 164,489 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SDM_GGAACTGCAGS_sorted.bed.gz processed_file_md5 eca3a30e99dbc29d04aa3c3162e01e15 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SDM_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SDM_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SDM_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SDM_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a02f23f2b8bbb698dbffd9366138c915 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens kidney epithelial cell;Original_cell_type=kidney epithelial cell;Lab=John Stamatoyannopoulos, UW;System=excretory system;ENCODE_BED_id=ENCFF059SDM;ENCODE_bigBed_id=ENCFF173LWY;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002518;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVH] [TFBS]
CTCF • HepG2 NGFTB435T4QTNM • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB435T4QTNM data_source Factorbook Download track Download number_of_intervals 45,811 bp_covered 595,543 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000AMA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 730,377 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF205OKL_YGCCMYCTRSTGG_sorted.bed.gz processed_file_md5 ff35b521f8f86c85f262f76ffb4c4d8d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF205OKL_YGCCMYCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF205OKL_YGCCMYCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF205OKL_YGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF205OKL_YGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fe3d4dd1c3e6e0e657879fda353b8d90 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Bradley Bernstein, Broad;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF205OKL;ENCODE_bigBed_id=ENCFF194VBQ;PMID=34755879;Motif_sequence=YGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AMA] [Life stage: Child] [TFBS]
CTCF • Skin NGFTB445XYUI3V • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTB445XYUI3V data_source Factorbook Download track Download number_of_intervals 4,250 bp_covered 46,750 output_type transcription factor binding sites all genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR252XWG biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 58,633 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292NVM_KGGAACTGCAG_sorted.bed.gz processed_file_md5 db6eae5efd2399c6174e0de0e27b6ca8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292NVM_KGGAACTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292NVM_KGGAACTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF292NVM_KGGAACTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF292NVM_KGGAACTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ca78befc2c967a8a81f3caf166d927b1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens lower leg skin tissue male adult (54 years);Original_cell_type=lower leg skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF292NVM;ENCODE_bigBed_id=ENCFF055ALO;PMID=34755879;Motif_sequence=KGGAACTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004264;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR252XWG] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTB44YO7JTAF • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTB44YO7JTAF data_source Factorbook Download track Download number_of_intervals 6,821 bp_covered 54,568 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 72,701 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF995TVK_TGCAGYNH_sorted.bed.gz processed_file_md5 899b5444566d625fab952eaf66a7e829 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF995TVK_TGCAGYNH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF995TVK_TGCAGYNH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF995TVK_TGCAGYNH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF995TVK_TGCAGYNH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 361dedc7ed55504576cd3cc152e6069a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7 treated with 100 nM 17_-estradiol for 45 minutes;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF995TVK;ENCODE_bigBed_id=ENCFF306NMO;PMID=34755879;Motif_sequence=TGCAGYNH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMS] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTB45MNS7DAX • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB45MNS7DAX data_source Factorbook Download track Download number_of_intervals 45,718 bp_covered 685,770 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DKV biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 768,143 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF827JRI_GCCASYAGGKGGCRS_sorted.bed.gz processed_file_md5 2446891729fe2d91c8f79cd898cba950 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF827JRI_GCCASYAGGKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF827JRI_GCCASYAGGKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF827JRI_GCCASYAGGKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF827JRI_GCCASYAGGKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a84673dc42e4119fd729604cb096067c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF827JRI;ENCODE_bigBed_id=ENCFF511URZ;PMID=34755879;Motif_sequence=GCCASYAGGKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKV] [TFBS]
CTCF • Gastroesophageal sphincter NGFTB47YWN764J • Factorbook34755879 Motif finding Gastroesophageal sphincter TFBS Show metadata Download track Track metadata identifier NGFTB47YWN764J data_source Factorbook Download track Download number_of_intervals 36,579 bp_covered 548,685 output_type transcription factor binding sites all genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR661XNQ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 634,166 downloaded_date 07/10/2024 release_date 06/23/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF584CZG_SYGCCMCCTGGTGGC_sorted.bed.gz processed_file_md5 0fd25db023cf3126d2dd156048f2a04b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF584CZG_SYGCCMCCTGGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF584CZG_SYGCCMCCTGGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF584CZG_SYGCCMCCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF584CZG_SYGCCMCCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cbb834695b71b0c318c3934ec008d917 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue male adult (54 years);Original_cell_type=gastroesophageal sphincter;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF584CZG;ENCODE_bigBed_id=ENCFF582GAX;PMID=34755879;Motif_sequence=SYGCCMCCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Gastroesophageal sphincter (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR661XNQ] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTB4ASH6O5L3 • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTB4ASH6O5L3 data_source Factorbook Download track Download number_of_intervals 300 bp_covered 5,100 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR450FRI biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,132 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF129JPF_GCCRCCAGGGGGCGCYV_filtered.bed.gz processed_file_md5 aca379cafdc7057da994d9c7a02768e2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF129JPF_GCCRCCAGGGGGCGCYV_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF129JPF_GCCRCCAGGGGGCGCYV_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF129JPF_GCCRCCAGGGGGCGCYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF129JPF_GCCRCCAGGGGGCGCYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8743fe5c8d47bef9602e1f2b576aa6cf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue male adult (54 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF129JPF;ENCODE_bigBed_id=ENCFF037IYT;PMID=34755879;Motif_sequence=GCCRCCAGGGGGCGCYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR450FRI] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTB4CNSHOPUL • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB4CNSHOPUL data_source Factorbook Download track Download number_of_intervals 40,331 bp_covered 604,965 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR287UXS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 618,655 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF139NMR_YKGCCASYAGRKGGC_sorted.bed.gz processed_file_md5 ee277f134fd77ceb27728efa2c1966a6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF139NMR_YKGCCASYAGRKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF139NMR_YKGCCASYAGRKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF139NMR_YKGCCASYAGRKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF139NMR_YKGCCASYAGRKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d5831436bc9f1ef51c11880a0868f5a8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 6 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF139NMR;ENCODE_bigBed_id=ENCFF119KAD;PMID=34755879;Motif_sequence=YKGCCASYAGRKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR287UXS] [Life stage: Adult] [TFBS]
CTCF • Left ventricle NGFTB4DA7YGU67 • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTB4DA7YGU67 data_source Factorbook Download track Download number_of_intervals 54,111 bp_covered 919,887 output_type transcription factor binding sites all genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR544APK biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 924,244 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_RSYGCCMYCTGGYGGCC_sorted.bed.gz processed_file_md5 a73c99b938b11b6128418da64fc7cec7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_RSYGCCMYCTGGYGGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_RSYGCCMYCTGGYGGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165RCX_RSYGCCMYCTGGYGGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165RCX_RSYGCCMYCTGGYGGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a555ca2a31cf9d912b84bc05c6606abe data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (53 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF165RCX;ENCODE_bigBed_id=ENCFF185CKY;PMID=34755879;Motif_sequence=RSYGCCMYCTGGYGGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR544APK] [Life stage: Adult] [TFBS]
CTCF • MM.1S NGFTB4DFRMBCVE • Factorbook34755879 Motif finding MM.1S TFBS Show metadata Download track Track metadata identifier NGFTB4DFRMBCVE data_source Factorbook Download track Download number_of_intervals 9,177 bp_covered 137,655 output_type transcription factor binding sites all genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR402IDP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 153,183 downloaded_date 07/10/2024 release_date 08/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF457QOK_HSHGSCTGCAGTTCC_sorted.bed.gz processed_file_md5 35b9a9cd210bdf156f63be997e68b504 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF457QOK_HSHGSCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF457QOK_HSHGSCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF457QOK_HSHGSCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF457QOK_HSHGSCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dd6e41aa7c933cc143f33ea490752054 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MM.1S;Original_cell_type=MM.1S;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF457QOK;ENCODE_bigBed_id=ENCFF869JMQ;PMID=34755879;Motif_sequence=HSHGSCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook MM.1S (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR402IDP] [Life stage: Adult] [TFBS]
CTCF • GM12875 NGFTB4DLNFXFF5 • Factorbook34755879 Motif finding GM12875 TFBS Show metadata Download track Track metadata identifier NGFTB4DLNFXFF5 data_source Factorbook Download track Download number_of_intervals 330 bp_covered 6,930 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12875 biosample_type Cell line biosample_term_id EFO:0001162 tissue_category Blood encode_experiment_id ENCSR000DRU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,803 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF456NUW_DSTGGCCRVYAGGKGGCRSYR_filtered.bed.gz processed_file_md5 6e41a85029b21ed2279d344b8c4611a0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF456NUW_DSTGGCCRVYAGGKGGCRSYR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF456NUW_DSTGGCCRVYAGGKGGCRSYR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF456NUW_DSTGGCCRVYAGGKGGCRSYR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF456NUW_DSTGGCCRVYAGGKGGCRSYR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 60fec908c2dc47dbf4ac3f0d6b52f5d1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12875;Original_cell_type=GM12875;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF456NUW;ENCODE_bigBed_id=ENCFF081UCQ;PMID=34755879;Motif_sequence=DSTGGCCRVYAGGKGGCRSYR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001162;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12875 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRU] [TFBS]
CTCF • Caco-2 NGFTB4EKQPKWDC • Factorbook34755879 Motif finding Caco-2 TFBS Show metadata Download track Track metadata identifier NGFTB4EKQPKWDC data_source Factorbook Download track Download number_of_intervals 10,918 bp_covered 163,770 output_type transcription factor binding sites all genome_build hg38 cell_type Caco-2 biosample_type Cell line biosample_term_id EFO:0001099 tissue_category Digestive encode_experiment_id ENCSR000DQN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 184,346 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF213NSB_VRGCTGCAGBWBCHS_sorted.bed.gz processed_file_md5 19b197fbcd82f30a4d49e47d27f82963 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF213NSB_VRGCTGCAGBWBCHS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF213NSB_VRGCTGCAGBWBCHS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF213NSB_VRGCTGCAGBWBCHS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF213NSB_VRGCTGCAGBWBCHS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8128f9a3ef4f68a4b9edb92bf24e5d1a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Caco-2;Original_cell_type=Caco-2;Lab=John Stamatoyannopoulos, UW;System=digestive system;ENCODE_BED_id=ENCFF213NSB;ENCODE_bigBed_id=ENCFF934QYS;PMID=34755879;Motif_sequence=VRGCTGCAGBWBCHS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001099;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Caco-2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQN] [Life stage: Adult] [TFBS]
CTCF • HeLa-S3 NGFTB4ENI4MZNN • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB4ENI4MZNN data_source Factorbook Download track Download number_of_intervals 46,085 bp_covered 691,275 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DLO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 804,904 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF548ARU_GCCMCCTRSTGGCMR_sorted.bed.gz processed_file_md5 c6e0a74df76af26d9b44f430485fd21a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF548ARU_GCCMCCTRSTGGCMR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF548ARU_GCCMCCTRSTGGCMR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF548ARU_GCCMCCTRSTGGCMR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF548ARU_GCCMCCTRSTGGCMR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 05b4bdacced4d64df3b35790be25aaba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Vishwanath Iyer, UTA;System=reproductive system;ENCODE_BED_id=ENCFF548ARU;ENCODE_bigBed_id=ENCFF565UFR;PMID=34755879;Motif_sequence=GCCMCCTRSTGGCMR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLO] [Life stage: Adult] [TFBS]
CTCF • Lung NGFTB4F5UO6LH4 • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTB4F5UO6LH4 data_source Factorbook Download track Download number_of_intervals 10,832 bp_covered 162,480 output_type transcription factor binding sites all genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR972LYL biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 181,063 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF647HXE_CCYCTGGTGSACWWT_sorted.bed.gz processed_file_md5 89f14dfc22e9484253a13f34fefe8b51 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF647HXE_CCYCTGGTGSACWWT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF647HXE_CCYCTGGTGSACWWT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF647HXE_CCYCTGGTGSACWWT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF647HXE_CCYCTGGTGSACWWT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 99ef045c397e7cc086dcd585b6b2ab9e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens upper lobe of left lung tissue female adult (51 years);Original_cell_type=upper lobe of left lung;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF647HXE;ENCODE_bigBed_id=ENCFF962AIJ;PMID=34755879;Motif_sequence=CCYCTGGTGSACWWT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008952;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR972LYL] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTB4FER7MM4C • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB4FER7MM4C data_source Factorbook Download track Download number_of_intervals 41,880 bp_covered 628,200 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DRZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 729,867 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_YGGCCASCAGRGGGC_sorted.bed.gz processed_file_md5 21c9be5cc855b5114036e0f87cef71ed wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_YGGCCASCAGRGGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_YGGCCASCAGRGGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF951PEM_YGGCCASCAGRGGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF951PEM_YGGCCASCAGRGGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 718c1b1fbb35545b6087c20b33c1443e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF951PEM;ENCODE_bigBed_id=ENCFF485TGR;PMID=34755879;Motif_sequence=YGGCCASCAGRGGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRZ] [TFBS]
CTCF • Muscularis mucosa NGFTB4FFL6NCDZ • Factorbook34755879 Motif finding Muscularis mucosa TFBS Show metadata Download track Track metadata identifier NGFTB4FFL6NCDZ data_source Factorbook Download track Download number_of_intervals 28,161 bp_covered 366,093 output_type transcription factor binding sites all genome_build hg38 cell_type Muscularis mucosa biosample_type Tissue biosample_term_id UBERON:0006676 tissue_category Digestive encode_experiment_id ENCSR074SFL biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 447,127 downloaded_date 07/10/2024 release_date 03/20/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862AXF_CCRCCAGGGGGCG_sorted.bed.gz processed_file_md5 1662c3312cf085658ddee748467bcb67 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862AXF_CCRCCAGGGGGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF862AXF_CCRCCAGGGGGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF862AXF_CCRCCAGGGGGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF862AXF_CCRCCAGGGGGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ca6867a01d57d984875bacd98af35f9d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus muscularis mucosa tissue female adult (53 years);Original_cell_type=esophagus muscularis mucosa;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF862AXF;ENCODE_bigBed_id=ENCFF182PYY;PMID=34755879;Motif_sequence=CCRCCAGGGGGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004648;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Muscularis mucosa (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR074SFL] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTB4FQN7VJOW • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTB4FQN7VJOW data_source Factorbook Download track Download number_of_intervals 12,422 bp_covered 136,642 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ANO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 180,354 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_BGGRRCTGCAG_sorted.bed.gz processed_file_md5 c9df8cd284ee8f31c9b333d8de44bd3c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_BGGRRCTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_BGGRRCTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693QOO_BGGRRCTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693QOO_BGGRRCTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8904b22b5e4062742e38d50456b5ea44 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Original_cell_type=fibroblast of lung;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF693QOO;ENCODE_bigBed_id=ENCFF356FDN;PMID=34755879;Motif_sequence=BGGRRCTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANO] [TFBS]