CTCF • HCT116 NGFTB5PAMFNQ5L • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTB5PAMFNQ5L data_source Factorbook Download track Download number_of_intervals 40,261 bp_covered 603,915 output_type transcription factor binding sites all genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR000BSE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 687,017 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273SBR_YGCCMCCTRSTGGYH_sorted.bed.gz processed_file_md5 b06f4e274ee23d93156e315981e9c0f7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273SBR_YGCCMCCTRSTGGYH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273SBR_YGCCMCCTRSTGGYH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF273SBR_YGCCMCCTRSTGGYH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF273SBR_YGCCMCCTRSTGGYH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 15a714d57de0e0f64828025b8bffd5a2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=Richard Myers, HAIB;System=digestive system;ENCODE_BED_id=ENCFF273SBR;ENCODE_bigBed_id=ENCFF373YMA;PMID=34755879;Motif_sequence=YGCCMCCTRSTGGYH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BSE] [Life stage: Adult] [TFBS]
CTCF • Bipolar neuron NGFTB5PNWD7TDK • Factorbook34755879 Motif finding Bipolar neuron TFBS Show metadata Download track Track metadata identifier NGFTB5PNWD7TDK data_source Factorbook Download track Download number_of_intervals 78,294 bp_covered 1,174,410 output_type transcription factor binding sites all genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR066BZZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,136,434 downloaded_date 07/10/2024 release_date 11/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_CCASYAGRKGGCGCY_sorted.bed.gz processed_file_md5 f93e9318c373cef8c2a8e44236cfc076 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_CCASYAGRKGGCGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_CCASYAGRKGGCGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF614PAB_CCASYAGRKGGCGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF614PAB_CCASYAGRKGGCGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 14f63b7b304bcc73f40f1f1c5896ce53 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Original_cell_type=bipolar neuron;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF614PAB;ENCODE_bigBed_id=ENCFF728HRR;PMID=34755879;Motif_sequence=CCASYAGRKGGCGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Bipolar neuron (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR066BZZ] [Life stage: Adult] [TFBS]
CTCF • PC-9 NGFTB5SV2GPCIO • Factorbook34755879 Motif finding PC-9 TFBS Show metadata Download track Track metadata identifier NGFTB5SV2GPCIO data_source Factorbook Download track Download number_of_intervals 13,101 bp_covered 262,020 output_type transcription factor binding sites all genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR243INX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 203,999 downloaded_date 07/10/2024 release_date 01/12/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734SEO_MNNBBGGHACTGCAGSHNSN_sorted.bed.gz processed_file_md5 f2ca7371d5b0dc36ac560b5db7084179 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734SEO_MNNBBGGHACTGCAGSHNSN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734SEO_MNNBBGGHACTGCAGSHNSN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF734SEO_MNNBBGGHACTGCAGSHNSN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF734SEO_MNNBBGGHACTGCAGSHNSN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5c0c566766407a5219ecc6acb6c9e4ed data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens PC-9;Original_cell_type=PC-9;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF734SEO;ENCODE_bigBed_id=ENCFF523OGY;PMID=34755879;Motif_sequence=MNNBBGGHACTGCAGSHNSN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook PC-9 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR243INX] [TFBS]
CTCF • A549 NGFTB5T2MXLHJV • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB5T2MXLHJV data_source Factorbook Download track Download number_of_intervals 52,648 bp_covered 789,720 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR249JOH biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 803,660 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF289FIV_GCGCCCYCTGGTGGC_sorted.bed.gz processed_file_md5 356b3499a6a61ac4ec0c3671723b45a6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF289FIV_GCGCCCYCTGGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF289FIV_GCGCCCYCTGGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF289FIV_GCGCCCYCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF289FIV_GCGCCCYCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 25e4d6259330cd99b21c6fa4ba1bc49c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF289FIV;ENCODE_bigBed_id=ENCFF567KHZ;PMID=34755879;Motif_sequence=GCGCCCYCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR249JOH] [Life stage: Adult] [TFBS]
CTCF • Lung NGFTB5TDHJ2HPC • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTB5TDHJ2HPC data_source Factorbook Download track Download number_of_intervals 21,675 bp_covered 628,575 output_type transcription factor binding sites all genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR970UZD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 456,813 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF786YIA_RGGAGCYGGGSASCGAGCKAGGYGGMGCG_sorted.bed.gz processed_file_md5 cb36ab81c120747c1c9fea345aedb3fb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF786YIA_RGGAGCYGGGSASCGAGCKAGGYGGMGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF786YIA_RGGAGCYGGGSASCGAGCKAGGYGGMGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF786YIA_RGGAGCYGGGSASCGAGCKAGGYGGMGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF786YIA_RGGAGCYGGGSASCGAGCKAGGYGGMGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dc98b5d07b35eedd461a724ed757420d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens upper lobe of left lung tissue female adult (53 years);Original_cell_type=upper lobe of left lung;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF786YIA;ENCODE_bigBed_id=ENCFF645BXH;PMID=34755879;Motif_sequence=RGGAGCYGGGSASCGAGCKAGGYGGMGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008952;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR970UZD] [Life stage: Adult] [TFBS]
CTCF • 22Rv1 NGFTB5UCDOS5YT • Factorbook34755879 Motif finding 22Rv1 TFBS Show metadata Download track Track metadata identifier NGFTB5UCDOS5YT data_source Factorbook Download track Download number_of_intervals 56,840 bp_covered 852,600 output_type transcription factor binding sites all genome_build hg38 cell_type 22Rv1 biosample_type Cell line biosample_term_id EFO:0002095 tissue_category Male Reproductive encode_experiment_id ENCSR857PBV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 588,851 downloaded_date 07/10/2024 release_date 06/15/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515MZT_CCASCAGRGGGCGCY_sorted.bed.gz processed_file_md5 f55a0d04751f78cf12c186d5c1cb2da7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515MZT_CCASCAGRGGGCGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515MZT_CCASCAGRGGGCGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF515MZT_CCASCAGRGGGCGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF515MZT_CCASCAGRGGGCGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 446d640752383009088dc8be1ec56f31 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens 22Rv1;Original_cell_type=22Rv1;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF515MZT;ENCODE_bigBed_id=ENCFF466OXN;PMID=34755879;Motif_sequence=CCASCAGRGGGCGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002095;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook 22Rv1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR857PBV] [TFBS]
CTCF • Transverse colon NGFTB5UCQEIR2N • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTB5UCQEIR2N data_source Factorbook Download track Download number_of_intervals 29,584 bp_covered 828,352 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR769WKR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 659,810 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF827OLU_YGCCMYCTGSTGGYNRNDNNKGGAAVHG_sorted.bed.gz processed_file_md5 5efd101e8ab562720ceed81ba6666db2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF827OLU_YGCCMYCTGSTGGYNRNDNNKGGAAVHG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF827OLU_YGCCMYCTGSTGGYNRNDNNKGGAAVHG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF827OLU_YGCCMYCTGSTGGYNRNDNNKGGAAVHG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF827OLU_YGCCMYCTGSTGGYNRNDNNKGGAAVHG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 294708db311ed0453392ed83ac3ab15d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue female adult (53 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF827OLU;ENCODE_bigBed_id=ENCFF471AZS;PMID=34755879;Motif_sequence=YGCCMYCTGSTGGYNRNDNNKGGAAVHG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR769WKR] [Life stage: Adult] [TFBS]
CTCF • T47D NGFTB5VG772TX5 • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTB5VG772TX5 data_source Factorbook Download track Download number_of_intervals 84 bp_covered 1,260 output_type transcription factor binding sites significant genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BNO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,218 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF524DPR_YGCCCYCTRSTGGCM_filtered.bed.gz processed_file_md5 ffa80ce79fab3b5e7658615a34d79806 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF524DPR_YGCCCYCTRSTGGCM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF524DPR_YGCCCYCTRSTGGCM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF524DPR_YGCCCYCTRSTGGCM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF524DPR_YGCCCYCTRSTGGCM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8a49fcb4ceb5bb50cb6214da82a92278 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF524DPR;ENCODE_bigBed_id=ENCFF063ZXA;PMID=34755879;Motif_sequence=YGCCCYCTRSTGGCM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNO] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTB5VJQLPIOJ • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTB5VJQLPIOJ data_source Factorbook Download track Download number_of_intervals 4,566 bp_covered 86,754 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR234HEM biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 87,197 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF455BVG_GCTGCARTTCCNVHHBYDG_sorted.bed.gz processed_file_md5 d8896072d4f586a1cb3175b6a789d6f3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF455BVG_GCTGCARTTCCNVHHBYDG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF455BVG_GCTGCARTTCCNVHHBYDG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF455BVG_GCTGCARTTCCNVHHBYDG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF455BVG_GCTGCARTTCCNVHHBYDG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 813463401922cbdc4942c0017f696326 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue male adult (37 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF455BVG;ENCODE_bigBed_id=ENCFF282UAO;PMID=34755879;Motif_sequence=GCTGCARTTCCNVHHBYDG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR234HEM] [Life stage: Adult] [TFBS]
CTCF • Transverse colon NGFTB5VOMLQKEP • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTB5VOMLQKEP data_source Factorbook Download track Download number_of_intervals 4,281 bp_covered 64,215 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR558HTE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 71,926 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_YTGGCCWSCAGRTGG_sorted.bed.gz processed_file_md5 bb6becf5d4a782336b9105c761b18f63 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_YTGGCCWSCAGRTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_YTGGCCWSCAGRTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF613UQP_YTGGCCWSCAGRTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF613UQP_YTGGCCWSCAGRTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1f8a11b57f582e158c233920ac135c97 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue female adult (51 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF613UQP;ENCODE_bigBed_id=ENCFF558VAH;PMID=34755879;Motif_sequence=YTGGCCWSCAGRTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR558HTE] [Life stage: Adult] [TFBS]
CTCF • Gastrocnemius medialis NGFTB5W3UWBUUK • Factorbook34755879 Motif finding Gastrocnemius medialis TFBS Show metadata Download track Track metadata identifier NGFTB5W3UWBUUK data_source Factorbook Download track Download number_of_intervals 29,505 bp_covered 354,060 output_type transcription factor binding sites all genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR071XWO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 404,628 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF375JPE_CRCCAGGGGGCG_sorted.bed.gz processed_file_md5 4b494b0b0ba29503b38e0382b50c7900 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF375JPE_CRCCAGGGGGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF375JPE_CRCCAGGGGGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF375JPE_CRCCAGGGGGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF375JPE_CRCCAGGGGGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 456c04c05c1100790e8d3064094f5317 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (51 years);Original_cell_type=gastrocnemius medialis;Lab=Michael Snyder, Stanford;System=musculature;ENCODE_BED_id=ENCFF375JPE;ENCODE_bigBed_id=ENCFF291LAG;PMID=34755879;Motif_sequence=CRCCAGGGGGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Gastrocnemius medialis (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR071XWO] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTB5W4QOJN6L • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTB5W4QOJN6L data_source Factorbook Download track Download number_of_intervals 148 bp_covered 2,220 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR000DUS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,849 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF757DFM_SYGCCMYCTRGTGGC_filtered.bed.gz processed_file_md5 a73c72bfc6f8a6b072e0fbd615a62d12 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF757DFM_SYGCCMYCTRGTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF757DFM_SYGCCMYCTRGTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF757DFM_SYGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF757DFM_SYGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0fca70239095fdcf8d851d692fdef162 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens mammary epithelial cell female;Original_cell_type=mammary epithelial cell;Lab=John Stamatoyannopoulos, UW;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF757DFM;ENCODE_bigBed_id=ENCFF304CKV;PMID=34755879;Motif_sequence=SYGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUS] [TFBS]
CTCF • Liver NGFTB5WXYHM2YQ • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTB5WXYHM2YQ data_source Factorbook Download track Download number_of_intervals 37,953 bp_covered 531,342 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR254YRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 633,043 downloaded_date 07/10/2024 release_date 04/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF095QMD_SYGCCMYCTGGTGG_sorted.bed.gz processed_file_md5 89a9f3f75594006fa7f968e3ca54d7d7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF095QMD_SYGCCMYCTGGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF095QMD_SYGCCMYCTGGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF095QMD_SYGCCMYCTGGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF095QMD_SYGCCMYCTGGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c828ec681b4dbdeda7420424ac4363ee data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (6 years) and with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF095QMD;ENCODE_bigBed_id=ENCFF895ERR;PMID=34755879;Motif_sequence=SYGCCMYCTGGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name Factorbook Liver (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR254YRM] [TFBS]
CTCF • Gastrocnemius medialis NGFTB5X4FRKNRS • Factorbook34755879 Motif finding Gastrocnemius medialis TFBS Show metadata Download track Track metadata identifier NGFTB5X4FRKNRS data_source Factorbook Download track Download number_of_intervals 27,283 bp_covered 409,245 output_type transcription factor binding sites all genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR998NQG biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 471,288 downloaded_date 07/10/2024 release_date 02/01/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF706MSC_GYGCCCYCTGGYGGC_sorted.bed.gz processed_file_md5 e7a6676e35c913e95f504079f1990316 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF706MSC_GYGCCCYCTGGYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF706MSC_GYGCCCYCTGGYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF706MSC_GYGCCCYCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF706MSC_GYGCCCYCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1c08864dc50fd5eda8cdd937e5d5c17f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (54 years);Original_cell_type=gastrocnemius medialis;Lab=Michael Snyder, Stanford;System=musculature;ENCODE_BED_id=ENCFF706MSC;ENCODE_bigBed_id=ENCFF468QWC;PMID=34755879;Motif_sequence=GYGCCCYCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Gastrocnemius medialis (repl. 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR998NQG] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTB5YGJTUKJL • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB5YGJTUKJL data_source Factorbook Download track Download number_of_intervals 41,154 bp_covered 617,310 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BHW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 689,150 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF875TRW_RSYGCCMYCTGSTGG_sorted.bed.gz processed_file_md5 6b94079545543d502c3a264bcbb4bf1e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF875TRW_RSYGCCMYCTGSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF875TRW_RSYGCCMYCTGSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF875TRW_RSYGCCMYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF875TRW_RSYGCCMYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 19801bb76e49b86528de0008b337b327 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF875TRW;ENCODE_bigBed_id=ENCFF021BMI;PMID=34755879;Motif_sequence=RSYGCCMYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHW] [Life stage: Adult] [TFBS]
CTCF • AG04449 NGFTB5ZXI2FRFW • Factorbook34755879 Motif finding AG04449 TFBS Show metadata Download track Track metadata identifier NGFTB5ZXI2FRFW data_source Factorbook Download track Download number_of_intervals 32,475 bp_covered 422,175 output_type transcription factor binding sites all genome_build hg38 cell_type AG04449 biosample_type Cell line biosample_term_id CLO:0034837 tissue_category Skin encode_experiment_id ENCSR000DPG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 521,001 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF958ABF_SYGCCMYCTGSTG_sorted.bed.gz processed_file_md5 98625d7bb68dccaa85147532f83ed3df wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF958ABF_SYGCCMYCTGSTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF958ABF_SYGCCMYCTGSTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF958ABF_SYGCCMYCTGSTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF958ABF_SYGCCMYCTGSTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8a5242a249c3b0d97f9a62775e77078b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG04449;Original_cell_type=AG04449;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF958ABF;ENCODE_bigBed_id=ENCFF814JIR;PMID=34755879;Motif_sequence=SYGCCMYCTGSTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0034837;is_hg38_lifted=no system_category Integumentary life_stage Embryonic track_name Factorbook AG04449 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPG] [Life stage: Embryonic] [TFBS]
CTCF • Gastrocnemius medialis NGFTB63GEY47RM • Factorbook34755879 Motif finding Gastrocnemius medialis TFBS Show metadata Download track Track metadata identifier NGFTB63GEY47RM data_source Factorbook Download track Download number_of_intervals 11,233 bp_covered 157,262 output_type transcription factor binding sites all genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR428BKN biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 160,872 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF575JKS_SSCTGCAGTKCCVC_sorted.bed.gz processed_file_md5 f31070b8d58e6d47d01f63a3136c8872 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF575JKS_SSCTGCAGTKCCVC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF575JKS_SSCTGCAGTKCCVC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF575JKS_SSCTGCAGTKCCVC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF575JKS_SSCTGCAGTKCCVC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 19606b6881f7fd5b3011541b2a047a5a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (53 years);Original_cell_type=gastrocnemius medialis;Lab=Michael Snyder, Stanford;System=musculature;ENCODE_BED_id=ENCFF575JKS;ENCODE_bigBed_id=ENCFF410RHW;PMID=34755879;Motif_sequence=SSCTGCAGTKCCVC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Gastrocnemius medialis (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR428BKN] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTB63WGHRS2M • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTB63WGHRS2M data_source Factorbook Download track Download number_of_intervals 129 bp_covered 1,935 output_type transcription factor binding sites significant genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Heart encode_experiment_id ENCSR000DTF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,660 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF376DLT_SYGCCCYCTRSTGGC_filtered.bed.gz processed_file_md5 0978de22ba4c5d7b16c0ccbc9459fcc7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF376DLT_SYGCCCYCTRSTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF376DLT_SYGCCCYCTRSTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF376DLT_SYGCCCYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF376DLT_SYGCCCYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 326d782c608d1d1051c2a706705887e5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac fibroblast female adult;Original_cell_type=cardiac fibroblast;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF376DLT;ENCODE_bigBed_id=ENCFF326EDY;PMID=34755879;Motif_sequence=SYGCCCYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002548;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTF] [TFBS]
CTCF • WERI-Rb-1 NGFTB64GZL5Q7K • Factorbook34755879 Motif finding WERI-Rb-1 TFBS Show metadata Download track Track metadata identifier NGFTB64GZL5Q7K data_source Factorbook Download track Download number_of_intervals 59,738 bp_covered 896,070 output_type transcription factor binding sites all genome_build hg38 cell_type WERI-Rb-1 biosample_type Cell line biosample_term_id EFO:0005715 tissue_category Eye encode_experiment_id ENCSR000DXW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,000,083 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_RSYGCCCYCTGSTGG_sorted.bed.gz processed_file_md5 3aae20e01576b75e02351c05e426e705 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_RSYGCCCYCTGSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_RSYGCCCYCTGSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF124UXX_RSYGCCCYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF124UXX_RSYGCCCYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7bbe84f8bfa9921d9ade6448a4e024b0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens WERI-Rb-1;Original_cell_type=WERI-Rb-1;Lab=John Stamatoyannopoulos, UW;System=sensory system;ENCODE_BED_id=ENCFF124UXX;ENCODE_bigBed_id=ENCFF349QKF;PMID=34755879;Motif_sequence=RSYGCCCYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005715;is_hg38_lifted=no system_category Sensory life_stage Child track_name Factorbook WERI-Rb-1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXW] [Life stage: Child] [TFBS]
CTCF • BE2C NGFTB6642E673R • Factorbook34755879 Motif finding BE2C TFBS Show metadata Download track Track metadata identifier NGFTB6642E673R data_source Factorbook Download track Download number_of_intervals 53,579 bp_covered 750,106 output_type transcription factor binding sites all genome_build hg38 cell_type BE2C biosample_type Cell line biosample_term_id EFO:0005725 tissue_category Brain encode_experiment_id ENCSR000DQD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 895,019 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976PML_SYGCCMYCTRGTGG_sorted.bed.gz processed_file_md5 636ef57b593e66b95aed63fa82788e06 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976PML_SYGCCMYCTRGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF976PML_SYGCCMYCTRGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF976PML_SYGCCMYCTRGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF976PML_SYGCCMYCTRGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1d5c9bcc378703bc0b7659675bc088dc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens BE2C;Original_cell_type=BE2C;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF976PML;ENCODE_bigBed_id=ENCFF757SRF;PMID=34755879;Motif_sequence=SYGCCMYCTRGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005725;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook BE2C (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQD] [Life stage: Child] [TFBS]