CTCF • VCaP NGFTB6NAVOJMHI • Factorbook34755879 Motif finding VCaP TFBS Show metadata Download track Track metadata identifier NGFTB6NAVOJMHI data_source Factorbook Download track Download number_of_intervals 53,308 bp_covered 799,620 output_type transcription factor binding sites all genome_build hg38 cell_type VCaP biosample_type Cell line biosample_term_id EFO:0007752 tissue_category Male Reproductive encode_experiment_id ENCSR265ARE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 601,155 downloaded_date 07/10/2024 release_date 07/21/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF569UXH_GCCASYAGRGGGCRS_sorted.bed.gz processed_file_md5 57d505a24244f12543241b8abe0222f9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF569UXH_GCCASYAGRGGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF569UXH_GCCASYAGRGGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF569UXH_GCCASYAGRGGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF569UXH_GCCASYAGRGGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 54695623a17c4920441517fe554ca4af data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens VCaP;Original_cell_type=VCaP;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF569UXH;ENCODE_bigBed_id=ENCFF620UCW;PMID=34755879;Motif_sequence=GCCASYAGRGGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007752;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook VCaP (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR265ARE] [Life stage: Adult] [TFBS]
CTCF • Gastrocnemius medialis NGFTB6NJ6PEMYX • Factorbook34755879 Motif finding Gastrocnemius medialis TFBS Show metadata Download track Track metadata identifier NGFTB6NJ6PEMYX data_source Factorbook Download track Download number_of_intervals 349 bp_covered 5,235 output_type transcription factor binding sites significant genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR998NQG biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,195 downloaded_date 07/10/2024 release_date 02/01/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF706MSC_GYGCCCYCTGGYGGC_filtered.bed.gz processed_file_md5 9ff688e84accf2c36a20eb771b7e2286 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF706MSC_GYGCCCYCTGGYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF706MSC_GYGCCCYCTGGYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF706MSC_GYGCCCYCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF706MSC_GYGCCCYCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1c08864dc50fd5eda8cdd937e5d5c17f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastrocnemius medialis tissue male adult (54 years);Original_cell_type=gastrocnemius medialis;Lab=Michael Snyder, Stanford;System=musculature;ENCODE_BED_id=ENCFF706MSC;ENCODE_bigBed_id=ENCFF468QWC;PMID=34755879;Motif_sequence=GYGCCCYCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Gastrocnemius medialis (repl. 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR998NQG] [Life stage: Adult] [TFBS]
CTCF • Adrenal gland NGFTB6NN2CJDHO • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTB6NN2CJDHO data_source Factorbook Download track Download number_of_intervals 33,276 bp_covered 366,036 output_type transcription factor binding sites all genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR899JSO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 439,164 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF297BQF_CASCAGRKGGC_sorted.bed.gz processed_file_md5 90cd1abf7bdfc5d666adef07b8e50366 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF297BQF_CASCAGRKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF297BQF_CASCAGRKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF297BQF_CASCAGRKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF297BQF_CASCAGRKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8c9162e5f4731f6b052a8c5f068b1563 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue male adult (37 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF297BQF;ENCODE_bigBed_id=ENCFF596QXB;PMID=34755879;Motif_sequence=CASCAGRKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR899JSO] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTB6QCHSLBAE • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTB6QCHSLBAE data_source Factorbook Download track Download number_of_intervals 215 bp_covered 4,300 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Male Reproductive encode_experiment_id ENCSR196HOM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,358 downloaded_date 07/10/2024 release_date 06/23/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF489EMW_YGGCCASCAGRGGGCGSYRS_filtered.bed.gz processed_file_md5 6a9508fdb2ac234226ed6c66f5dd6b05 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF489EMW_YGGCCASCAGRGGGCGSYRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF489EMW_YGGCCASCAGRGGGCGSYRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF489EMW_YGGCCASCAGRGGGCGSYRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF489EMW_YGGCCASCAGRGGGCGSYRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 823ba68aa3fa1b220b53881a223ce2ed data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens epithelial cell of prostate male;Original_cell_type=epithelial cell of prostate;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF489EMW;ENCODE_bigBed_id=ENCFF086GTI;PMID=34755879;Motif_sequence=YGGCCASCAGRGGGCGSYRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002231;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR196HOM] [TFBS]
CTCF • A549 NGFTB6QECXDIZ3 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB6QECXDIZ3 data_source Factorbook Download track Download number_of_intervals 49,010 bp_covered 735,150 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR249JOH biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 720,349 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF289FIV_CCASYAGGKGGCGCY_sorted.bed.gz processed_file_md5 3b95054d216a3f6a5b600acf01df283d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF289FIV_CCASYAGGKGGCGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF289FIV_CCASYAGGKGGCGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF289FIV_CCASYAGGKGGCGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF289FIV_CCASYAGGKGGCGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6295631c34107d70b054035f5a633341 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF289FIV;ENCODE_bigBed_id=ENCFF567KHZ;PMID=34755879;Motif_sequence=CCASYAGGKGGCGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR249JOH] [Life stage: Adult] [TFBS]
CTCF • B cell NGFTB6QM6BVCMI • Factorbook34755879 Motif finding B cell TFBS Show metadata Download track Track metadata identifier NGFTB6QM6BVCMI data_source Factorbook Download track Download number_of_intervals 273 bp_covered 5,187 output_type transcription factor binding sites significant genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR000AUV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,190 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF390ICZ_RSYGCCMYCTRGTGGYMRN_filtered.bed.gz processed_file_md5 3fd91cdcc25242a63c80bb8b8e8d6158 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF390ICZ_RSYGCCMYCTRGTGGYMRN_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF390ICZ_RSYGCCMYCTRGTGGYMRN_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF390ICZ_RSYGCCMYCTRGTGGYMRN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF390ICZ_RSYGCCMYCTRGTGGYMRN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4a68ba5eb03a8974749baa746325535a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens B cell female adult (27 years) and female adult (43 years);Original_cell_type=B cell;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF390ICZ;ENCODE_bigBed_id=ENCFF738RTM;PMID=34755879;Motif_sequence=RSYGCCMYCTRGTGGYMRN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook B cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUV] [Life stage: Adult] [TFBS]
CTCF • Ovary NGFTB6RAGHB4RM • Factorbook34755879 Motif finding Ovary TFBS Show metadata Download track Track metadata identifier NGFTB6RAGHB4RM data_source Factorbook Download track Download number_of_intervals 179 bp_covered 2,685 output_type transcription factor binding sites significant genome_build hg38 cell_type Ovary biosample_type Tissue biosample_term_id NCIT:C12404 tissue_category Female Reproductive encode_experiment_id ENCSR493APD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,048 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF782GIY_SCGCCCCCTGGYGGC_filtered.bed.gz processed_file_md5 730e3dde42a5eb73b14d2d8b8005c36a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF782GIY_SCGCCCCCTGGYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF782GIY_SCGCCCCCTGGYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF782GIY_SCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF782GIY_SCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b81110580056bdef6d89becd24c4a2f4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens ovary tissue female adult (53 years);Original_cell_type=ovary;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF782GIY;ENCODE_bigBed_id=ENCFF062XMG;PMID=34755879;Motif_sequence=SCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000992;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Ovary (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR493APD] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTB6S4UQQA76 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB6S4UQQA76 data_source Factorbook Download track Download number_of_intervals 15,094 bp_covered 166,034 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000DNA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 206,588 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF467CVV_CWGVDRCWGCA_sorted.bed.gz processed_file_md5 206de1525ad14350ff308f344c73cc93 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF467CVV_CWGVDRCWGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF467CVV_CWGVDRCWGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF467CVV_CWGVDRCWGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF467CVV_CWGVDRCWGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1b8720cc9241207244801fc4ef0071ac data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Vishwanath Iyer, UTA;System=respiratory system;ENCODE_BED_id=ENCFF467CVV;ENCODE_bigBed_id=ENCFF182TCQ;PMID=34755879;Motif_sequence=CWGVDRCWGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNA] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTB6TFTNFLC4 • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTB6TFTNFLC4 data_source Factorbook Download track Download number_of_intervals 216 bp_covered 3,240 output_type transcription factor binding sites significant genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ANO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,451 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF693QOO_GCGCCCYCTDSTGGM_filtered.bed.gz processed_file_md5 691441eaa37e02a59e0258ae3292978f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF693QOO_GCGCCCYCTDSTGGM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF693QOO_GCGCCCYCTDSTGGM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693QOO_GCGCCCYCTDSTGGM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693QOO_GCGCCCYCTDSTGGM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2a9f70788874b8174506fc5b78c66f90 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Original_cell_type=fibroblast of lung;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF693QOO;ENCODE_bigBed_id=ENCFF356FDN;PMID=34755879;Motif_sequence=GCGCCCYCTDSTGGM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANO] [TFBS]
CTCF • CD14+ monocyte NGFTB6TSQWYRWP • Factorbook34755879 Motif finding CD14+ monocyte TFBS Show metadata Download track Track metadata identifier NGFTB6TSQWYRWP data_source Factorbook Download track Download number_of_intervals 95 bp_covered 1,995 output_type transcription factor binding sites significant genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ATN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,525 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF190KNC_WHTGDCCANYAGRKGGCAGCR_filtered.bed.gz processed_file_md5 f4a32b0d7342f083a37175261b201eec wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF190KNC_WHTGDCCANYAGRKGGCAGCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF190KNC_WHTGDCCANYAGRKGGCAGCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF190KNC_WHTGDCCANYAGRKGGCAGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF190KNC_WHTGDCCANYAGRKGGCAGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d180c011e12532c1d490ee3a300ff44b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens CD14-positive monocyte female;Original_cell_type=CD14-positive monocyte;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF190KNC;ENCODE_bigBed_id=ENCFF590KQU;PMID=34755879;Motif_sequence=WHTGDCCANYAGRKGGCAGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook CD14+ monocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATN] [TFBS]
CTCF • HFF-Myc NGFTB6V2LJQN6L • Factorbook34755879 Motif finding HFF-Myc TFBS Show metadata Download track Track metadata identifier NGFTB6V2LJQN6L data_source Factorbook Download track Download number_of_intervals 47,531 bp_covered 998,151 output_type transcription factor binding sites all genome_build hg38 cell_type HFF-Myc biosample_type Cell line biosample_term_id EFO:0005710 tissue_category Skin encode_experiment_id ENCSR000DUM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 946,436 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB_sorted.bed.gz processed_file_md5 d9d8ee8ff13f18f92de092a967691cfa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4629beb051b1a2aa4b18974fb2159363 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HFF-Myc originated from foreskin fibroblast;Original_cell_type=HFF-Myc;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF465OQP;ENCODE_bigBed_id=ENCFF680WYR;PMID=34755879;Motif_sequence=NYGGCCASYAGRGGGCRSYVB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005710;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook HFF-Myc (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUM] [TFBS]
CTCF • A549 NGFTB6WCA5TEL5 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTB6WCA5TEL5 data_source Factorbook Download track Download number_of_intervals 44,771 bp_covered 895,420 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR035OXA biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 750,255 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF245RYN_MSRGCGCCMYCTRSTGGCCR_sorted.bed.gz processed_file_md5 574cb424f671c1f556e80cd5a611259e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF245RYN_MSRGCGCCMYCTRSTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF245RYN_MSRGCGCCMYCTRSTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF245RYN_MSRGCGCCMYCTRSTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF245RYN_MSRGCGCCMYCTRSTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 208d9a539ed7f90ed47a5792b5e802ed data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF245RYN;ENCODE_bigBed_id=ENCFF032HRG;PMID=34755879;Motif_sequence=MSRGCGCCMYCTRSTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR035OXA] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTB6WYWLWA4F • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTB6WYWLWA4F data_source Factorbook Download track Download number_of_intervals 41,956 bp_covered 755,208 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Blood Vessel encode_experiment_id ENCSR000DUX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 771,601 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF170QWE_CACYAGRKGGCRSYVNNG_sorted.bed.gz processed_file_md5 5d552bc41198f6121b03763d759c6c51 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF170QWE_CACYAGRKGGCRSYVNNG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF170QWE_CACYAGRKGGCRSYVNNG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF170QWE_CACYAGRKGGCRSYVNNG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF170QWE_CACYAGRKGGCRSYVNNG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 221ec736380c8ced41ec18ebaa4535b6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of pulmonary artery;Original_cell_type=fibroblast of pulmonary artery;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF170QWE;ENCODE_bigBed_id=ENCFF742RSV;PMID=34755879;Motif_sequence=CACYAGRKGGCRSYVNNG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002557;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUX] [TFBS]
CTCF • K562 NGFTB6YAX4FRKA • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB6YAX4FRKA data_source Factorbook Download track Download number_of_intervals 288 bp_covered 4,320 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DMA biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,349 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF740TLU_GCCACYAGRKGGCRS_filtered.bed.gz processed_file_md5 b6da149939c4e4d5a7856ce47121879b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF740TLU_GCCACYAGRKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF740TLU_GCCACYAGRKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF740TLU_GCCACYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF740TLU_GCCACYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 306733703f03201cb2c79d0ab3a50ded data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF740TLU;ENCODE_bigBed_id=ENCFF302CGQ;PMID=34755879;Motif_sequence=GCCACYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMA] [Life stage: Adult] [TFBS]
CTCF • Prostate gland NGFTB6YOVIQOAD • Factorbook34755879 Motif finding Prostate gland TFBS Show metadata Download track Track metadata identifier NGFTB6YOVIQOAD data_source Factorbook Download track Download number_of_intervals 57,179 bp_covered 1,200,759 output_type transcription factor binding sites all genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR720USO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,097,967 downloaded_date 07/10/2024 release_date 11/29/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG_sorted.bed.gz processed_file_md5 cad50d415f702e40d3c63979ea17d880 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ddc8c5cdeeb39776292767974aa5da38 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens prostate gland tissue male adult (37 years);Original_cell_type=prostate gland;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF351NKT;ENCODE_bigBed_id=ENCFF979KAF;PMID=34755879;Motif_sequence=GGCCRCCAGGGGGCGCYVBVG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Prostate gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR720USO] [Life stage: Adult] [TFBS]
CTCF • Transverse colon NGFTB6YQMZN37N • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTB6YQMZN37N data_source Factorbook Download track Download number_of_intervals 30,603 bp_covered 428,442 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR833FWC biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 450,080 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF860GRV_CASYAGRGGGCRCY_sorted.bed.gz processed_file_md5 f065e181ae5d18985e7f1cf1412c4236 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF860GRV_CASYAGRGGGCRCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF860GRV_CASYAGRGGGCRCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF860GRV_CASYAGRGGGCRCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF860GRV_CASYAGRGGGCRCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b229f111d4f478064b5ad5594c23f8d3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue male adult (54 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF860GRV;ENCODE_bigBed_id=ENCFF077CMZ;PMID=34755879;Motif_sequence=CASYAGRGGGCRCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR833FWC] [Life stage: Adult] [TFBS]
CTCF • Neutrophil NGFTB6ZFUWXVRF • Factorbook34755879 Motif finding Neutrophil TFBS Show metadata Download track Track metadata identifier NGFTB6ZFUWXVRF data_source Factorbook Download track Download number_of_intervals 153 bp_covered 4,284 output_type transcription factor binding sites significant genome_build hg38 cell_type Neutrophil biosample_type Primary cell biosample_term_id CL:0000775 tissue_category Blood encode_experiment_id ENCSR785YRL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,198 downloaded_date 07/10/2024 release_date 12/01/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610WXV_CTGCAGTKCCVSMHSYGGCCRSYRGGGG_filtered.bed.gz processed_file_md5 ce005ad0cfd4dca68f58fe88d9db105f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610WXV_CTGCAGTKCCVSMHSYGGCCRSYRGGGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610WXV_CTGCAGTKCCVSMHSYGGCCRSYRGGGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF610WXV_CTGCAGTKCCVSMHSYGGCCRSYRGGGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF610WXV_CTGCAGTKCCVSMHSYGGCCRSYRGGGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bb65626a4b995ece651357184b6a4f58 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens neutrophil;Original_cell_type=neutrophil;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF610WXV;ENCODE_bigBed_id=ENCFF770HHA;PMID=34755879;Motif_sequence=CTGCAGTKCCVSMHSYGGCCRSYRGGGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000775;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Neutrophil (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR785YRL] [TFBS]
CTCF • Fibroblast NGFTB727RVVFEV • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTB727RVVFEV data_source Factorbook Download track Download number_of_intervals 6 bp_covered 162 output_type transcription factor binding sites significant genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000DWQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 488 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533NKJ_TTTGYCAGCTGDTGCAATGTTAGGCTT_filtered.bed.gz processed_file_md5 6125efa39a7459c1b39c4d954005a2cf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533NKJ_TTTGYCAGCTGDTGCAATGTTAGGCTT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533NKJ_TTTGYCAGCTGDTGCAATGTTAGGCTT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF533NKJ_TTTGYCAGCTGDTGCAATGTTAGGCTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF533NKJ_TTTGYCAGCTGDTGCAATGTTAGGCTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 363c5a97d1884882bd809acc7df735b8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens foreskin fibroblast male newborn;Original_cell_type=foreskin fibroblast;Lab=John Stamatoyannopoulos, UW;System=integumental system,reproductive system;ENCODE_BED_id=ENCFF533NKJ;ENCODE_bigBed_id=ENCFF671HLG;PMID=34755879;Motif_sequence=TTTGYCAGCTGDTGCAATGTTAGGCTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:1001608;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWQ] [TFBS]
CTCF • Keratinocyte NGFTB72IJ4XEY4 • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTB72IJ4XEY4 data_source Factorbook Download track Download number_of_intervals 2,196 bp_covered 46,116 output_type transcription factor binding sites significant genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000DNC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 39,629 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN_filtered.bed.gz processed_file_md5 fad12c792e2b0640564413b72d2cfb4c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF380TKV_YGGCCASYAGRKGGCRSYVBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eb74b45b6ef07b98c7fb6834e0c6ae5c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens keratinocyte female;Original_cell_type=keratinocyte;Lab=Vishwanath Iyer, UTA;System=integumental system;ENCODE_BED_id=ENCFF380TKV;ENCODE_bigBed_id=ENCFF693ZQO;PMID=34755879;Motif_sequence=YGGCCASYAGRKGGCRSYVBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNC] [TFBS]
CTCF • Loucy NGFTB73SWPNCFT • Factorbook34755879 Motif finding Loucy TFBS Show metadata Download track Track metadata identifier NGFTB73SWPNCFT data_source Factorbook Download track Download number_of_intervals 66,467 bp_covered 997,005 output_type transcription factor binding sites all genome_build hg38 cell_type Loucy biosample_type Cell line biosample_term_id EFO:0007112 tissue_category Blood encode_experiment_id ENCSR464DKE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,050,909 downloaded_date 07/10/2024 release_date 09/04/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF211TFI_RCCASYAGRKGGCRC_sorted.bed.gz processed_file_md5 1ed50c83b26c92f5268f6224a17f400c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF211TFI_RCCASYAGRKGGCRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF211TFI_RCCASYAGRKGGCRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF211TFI_RCCASYAGRKGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF211TFI_RCCASYAGRKGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7ae708715ffb13d4ac73fb1dac3440ac data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Loucy;Original_cell_type=Loucy;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF211TFI;ENCODE_bigBed_id=ENCFF544KSF;PMID=34755879;Motif_sequence=RCCASYAGRKGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007112;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Loucy (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR464DKE] [Life stage: Adult] [TFBS]