CTCF • A549 NGFTBA3TKWTPT6 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBA3TKWTPT6 data_source Factorbook Download track Download number_of_intervals 66,624 bp_covered 1,265,856 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000AUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,075,636 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC_sorted.bed.gz processed_file_md5 0427c64c48c75cc85dad3f48ac4937d5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 89805e6b8ae2dffdfb4a7195d0ea82cb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF977ZIK;ENCODE_bigBed_id=ENCFF889NGM;PMID=34755879;Motif_sequence=VBRGYGCCMYCTRGTGGYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUE] [Life stage: Adult] [TFBS]
CTCF • MM.1S NGFTBA43QTVTHU • Factorbook34755879 Motif finding MM.1S TFBS Show metadata Download track Track metadata identifier NGFTBA43QTVTHU data_source Factorbook Download track Download number_of_intervals 54,355 bp_covered 1,087,100 output_type transcription factor binding sites all genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR402IDP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,019,079 downloaded_date 07/10/2024 release_date 08/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY_sorted.bed.gz processed_file_md5 a4db9bcee3e68edb00bf9b895f9e3eed wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 10a89d6dce3dbc5953563959d658b763 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MM.1S;Original_cell_type=MM.1S;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF457QOK;ENCODE_bigBed_id=ENCFF869JMQ;PMID=34755879;Motif_sequence=CNVBRSYGCCMYCTRSTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook MM.1S (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR402IDP] [Life stage: Adult] [TFBS]
CTCF • HeLa-S3 NGFTBA5XR6S45W • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBA5XR6S45W data_source Factorbook Download track Download number_of_intervals 72 bp_covered 1,224 output_type transcription factor binding sites significant genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000AOA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,177 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF111RWV_BRSYGCCMYCTRGTGGC_filtered.bed.gz processed_file_md5 cceb03ff5153914d9f767c94c4056849 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF111RWV_BRSYGCCMYCTRGTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF111RWV_BRSYGCCMYCTRGTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF111RWV_BRSYGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF111RWV_BRSYGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9e16cee89fc4e069d68455db7a71cab9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Bradley Bernstein, Broad;System=reproductive system;ENCODE_BED_id=ENCFF111RWV;ENCODE_bigBed_id=ENCFF255ASZ;PMID=34755879;Motif_sequence=BRSYGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AOA] [Life stage: Adult] [TFBS]
CTCF • Tibial nerve NGFTBA667VXE2A • Factorbook34755879 Motif finding Tibial nerve TFBS Show metadata Download track Track metadata identifier NGFTBA667VXE2A data_source Factorbook Download track Download number_of_intervals 47,029 bp_covered 705,435 output_type transcription factor binding sites all genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR469POZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 741,346 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF831KJJ_GCGCCCCCTGGYGGC_sorted.bed.gz processed_file_md5 541160c6231df87cede0afb4c166d638 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF831KJJ_GCGCCCCCTGGYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF831KJJ_GCGCCCCCTGGYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF831KJJ_GCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF831KJJ_GCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a078327b0d012e1e898661d80b71369e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens tibial nerve tissue female adult (53 years);Original_cell_type=tibial nerve;Lab=Michael Snyder, Stanford;System=peripheral nervous system;ENCODE_BED_id=ENCFF831KJJ;ENCODE_bigBed_id=ENCFF477JAK;PMID=34755879;Motif_sequence=GCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Tibial nerve (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR469POZ] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTBA763WZDCH • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBA763WZDCH data_source Factorbook Download track Download number_of_intervals 14,310 bp_covered 414,990 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Heart encode_experiment_id ENCSR000DTF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 339,238 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF376DLT_KGSWGCCMCCTAGKGGCYRMTKKRGGRAT_sorted.bed.gz processed_file_md5 9e49558cd4677123bd77e657c3db57ae wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF376DLT_KGSWGCCMCCTAGKGGCYRMTKKRGGRAT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF376DLT_KGSWGCCMCCTAGKGGCYRMTKKRGGRAT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF376DLT_KGSWGCCMCCTAGKGGCYRMTKKRGGRAT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF376DLT_KGSWGCCMCCTAGKGGCYRMTKKRGGRAT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ff8c405cbaa45daabb7a60884a6876be data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac fibroblast female adult;Original_cell_type=cardiac fibroblast;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF376DLT;ENCODE_bigBed_id=ENCFF326EDY;PMID=34755879;Motif_sequence=KGSWGCCMCCTAGKGGCYRMTKKRGGRAT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002548;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTF] [TFBS]
CTCF • Peyers patch NGFTBAAAPYJKSP • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBAAAPYJKSP data_source Factorbook Download track Download number_of_intervals 38,553 bp_covered 693,954 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR799WDT biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 703,702 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_RYAGCGCCMCCTGCYGGM_sorted.bed.gz processed_file_md5 b2fc62f41820bbfc7dce76b81b65492f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_RYAGCGCCMCCTGCYGGM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_RYAGCGCCMCCTGCYGGM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF320DPI_RYAGCGCCMCCTGCYGGM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF320DPI_RYAGCGCCMCCTGCYGGM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6d0ba55f69755c0e1ea74e3bffccc1d7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (54 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF320DPI;ENCODE_bigBed_id=ENCFF828IDE;PMID=34755879;Motif_sequence=RYAGCGCCMCCTGCYGGM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR799WDT] [Life stage: Adult] [TFBS]
CTCF • Coronary artery NGFTBAASMUJ5AS • Factorbook34755879 Motif finding Coronary artery TFBS Show metadata Download track Track metadata identifier NGFTBAASMUJ5AS data_source Factorbook Download track Download number_of_intervals 338 bp_covered 5,070 output_type transcription factor binding sites significant genome_build hg38 cell_type Coronary artery biosample_type Tissue biosample_term_id UBERON:0001621 tissue_category Blood Vessel encode_experiment_id ENCSR175FLL biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,002 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF426FCU_GCCACCAGRGGGCRS_filtered.bed.gz processed_file_md5 cfc4e88c71a6925e319d39bd131c3bdc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF426FCU_GCCACCAGRGGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF426FCU_GCCACCAGRGGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF426FCU_GCCACCAGRGGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF426FCU_GCCACCAGRGGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ef772fdaae15604bd7026d00d3ee4d2d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens coronary artery tissue female adult (53 years);Original_cell_type=coronary artery;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF426FCU;ENCODE_bigBed_id=ENCFF483TFF;PMID=34755879;Motif_sequence=GCCACCAGRGGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001621;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Coronary artery (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR175FLL] [Life stage: Adult] [TFBS]
CTCF • Keratinocyte NGFTBACA66K6EX • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBACA66K6EX data_source Factorbook Download track Download number_of_intervals 12,571 bp_covered 125,710 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000DWX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 169,109 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_GGAACTGCAG_sorted.bed.gz processed_file_md5 715d37b959364dbe18c55e64ffe0c344 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_GGAACTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_GGAACTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF149BJK_GGAACTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF149BJK_GGAACTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f1af85625a6233806f35dd0d2cfe1199 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens keratinocyte female;Original_cell_type=keratinocyte;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF149BJK;ENCODE_bigBed_id=ENCFF667ULX;PMID=34755879;Motif_sequence=GGAACTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWX] [TFBS]
CTCF • Skin NGFTBADSQ6LM4Y • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTBADSQ6LM4Y data_source Factorbook Download track Download number_of_intervals 1,450 bp_covered 26,100 output_type transcription factor binding sites significant genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR038FOS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 23,733 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF525JGP_RSYGCCCCCTGGTGGCCR_filtered.bed.gz processed_file_md5 b1aea216d5dbf20026b1e06499ecdd13 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF525JGP_RSYGCCCCCTGGTGGCCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF525JGP_RSYGCCCCCTGGTGGCCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF525JGP_RSYGCCCCCTGGTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF525JGP_RSYGCCCCCTGGTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6484b9125a1e0017ecb2b6ead5721b7b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens suprapubic skin tissue male adult (54 years);Original_cell_type=suprapubic skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF525JGP;ENCODE_bigBed_id=ENCFF370ILR;PMID=34755879;Motif_sequence=RSYGCCCCCTGGTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR038FOS] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTBAEZJKUH3P • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBAEZJKUH3P data_source Factorbook Download track Download number_of_intervals 32,493 bp_covered 487,395 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DLS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 546,918 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF240MUS_GCCASCAGRGGGMGC_sorted.bed.gz processed_file_md5 456176fe815cfe02f32d8d8dc6381ba1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF240MUS_GCCASCAGRGGGMGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF240MUS_GCCASCAGRGGGMGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF240MUS_GCCASCAGRGGGMGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF240MUS_GCCASCAGRGGGMGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 926b886eee7c3165a38b132995e7c1d7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Vishwanath Iyer, UTA;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF240MUS;ENCODE_bigBed_id=ENCFF668CTD;PMID=34755879;Motif_sequence=GCCASCAGRGGGMGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLS] [Life stage: Child] [TFBS]
CTCF • Pancreas NGFTBAF6PSEESF • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTBAF6PSEESF data_source Factorbook Download track Download number_of_intervals 40,711 bp_covered 610,665 output_type transcription factor binding sites all genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR307PFP biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 663,534 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225IGV_YGDCCASYAGRKGGC_sorted.bed.gz processed_file_md5 7413d05023f1cd6e520b300576dbcf18 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225IGV_YGDCCASYAGRKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF225IGV_YGDCCASYAGRKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF225IGV_YGDCCASYAGRKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF225IGV_YGDCCASYAGRKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 18a0a581e75ca11bba63ec7474eccc4b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens body of pancreas tissue male adult (37 years);Original_cell_type=body of pancreas;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF225IGV;ENCODE_bigBed_id=ENCFF438KTE;PMID=34755879;Motif_sequence=YGDCCASYAGRKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001150;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR307PFP] [Life stage: Adult] [TFBS]
CTCF • Peyers patch NGFTBAGS2X5ESL • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBAGS2X5ESL data_source Factorbook Download track Download number_of_intervals 50,483 bp_covered 757,245 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR375VXU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 836,391 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_RGCGCCMCCTGSYGG_sorted.bed.gz processed_file_md5 7e27df08a839fdd22c7a99b716adf78a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_RGCGCCMCCTGSYGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_RGCGCCMCCTGSYGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF013GUN_RGCGCCMCCTGSYGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF013GUN_RGCGCCMCCTGSYGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ddbf3fe91446a150861c211334c7bf75 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue female adult (53 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF013GUN;ENCODE_bigBed_id=ENCFF746TCR;PMID=34755879;Motif_sequence=RGCGCCMCCTGSYGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR375VXU] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTBAGX5TAJNP • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBAGX5TAJNP data_source Factorbook Download track Download number_of_intervals 24,945 bp_covered 374,175 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR692ILH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 429,918 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF585XAQ_SCGCCMCCTGGTGGC_sorted.bed.gz processed_file_md5 d2f4468e5d8065c87c27da871352831f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF585XAQ_SCGCCMCCTGGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF585XAQ_SCGCCMCCTGGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF585XAQ_SCGCCMCCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF585XAQ_SCGCCMCCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 56398efd13d9796bacf59d33e53a6935 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue female adult (53 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF585XAQ;ENCODE_bigBed_id=ENCFF643KOU;PMID=34755879;Motif_sequence=SCGCCMCCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR692ILH] [Life stage: Adult] [TFBS]
CTCF • 22Rv1 NGFTBAHPVIUHBX • Factorbook34755879 Motif finding 22Rv1 TFBS Show metadata Download track Track metadata identifier NGFTBAHPVIUHBX data_source Factorbook Download track Download number_of_intervals 57,248 bp_covered 858,720 output_type transcription factor binding sites all genome_build hg38 cell_type 22Rv1 biosample_type Cell line biosample_term_id EFO:0002095 tissue_category Male Reproductive encode_experiment_id ENCSR847XGE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 617,010 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF992CTF_GCCASYAGRGGGCGC_sorted.bed.gz processed_file_md5 699dac16b164187f6e1549d13dc9ce08 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF992CTF_GCCASYAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF992CTF_GCCASYAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF992CTF_GCCASYAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF992CTF_GCCASYAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5a4b12754fcc6735439b3ea7a0d9f14b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens 22Rv1 treated with 10 nM 17_-hydroxy-5_-androstan-3-one for 4 hours;Original_cell_type=22Rv1;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF992CTF;ENCODE_bigBed_id=ENCFF679QSU;PMID=34755879;Motif_sequence=GCCASYAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002095;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook 22Rv1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR847XGE] [TFBS]
CTCF • Left ventricle NGFTBAMCP557PC • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTBAMCP557PC data_source Factorbook Download track Download number_of_intervals 3 bp_covered 84 output_type transcription factor binding sites significant genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR791AYW biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 422 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_TCGTKTRGAWWCAGMGCCWTCTGYYGMA_filtered.bed.gz processed_file_md5 d87c8508213d925cc00600cc33d29a43 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_TCGTKTRGAWWCAGMGCCWTCTGYYGMA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_TCGTKTRGAWWCAGMGCCWTCTGYYGMA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF274NOI_TCGTKTRGAWWCAGMGCCWTCTGYYGMA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF274NOI_TCGTKTRGAWWCAGMGCCWTCTGYYGMA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 256fc9071e157d1b574e8f0cd4b8d0fd data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (51 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF274NOI;ENCODE_bigBed_id=ENCFF987PUT;PMID=34755879;Motif_sequence=TCGTKTRGAWWCAGMGCCWTCTGYYGMA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR791AYW] [Life stage: Adult] [TFBS]
CTCF • Ovary NGFTBAMG4D5EQZ • Factorbook34755879 Motif finding Ovary TFBS Show metadata Download track Track metadata identifier NGFTBAMG4D5EQZ data_source Factorbook Download track Download number_of_intervals 31,459 bp_covered 471,885 output_type transcription factor binding sites all genome_build hg38 cell_type Ovary biosample_type Tissue biosample_term_id NCIT:C12404 tissue_category Female Reproductive encode_experiment_id ENCSR548DDS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 536,550 downloaded_date 07/10/2024 release_date 12/19/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF130ADS_GCGCCCCCTGSYGGC_sorted.bed.gz processed_file_md5 1f8f413ba44884e4370eca2dce60be7d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF130ADS_GCGCCCCCTGSYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF130ADS_GCGCCCCCTGSYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF130ADS_GCGCCCCCTGSYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF130ADS_GCGCCCCCTGSYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a58a8f990bdfcca68b76b84c3585aa12 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens ovary tissue female adult (51 years);Original_cell_type=ovary;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF130ADS;ENCODE_bigBed_id=ENCFF845YUT;PMID=34755879;Motif_sequence=GCGCCCCCTGSYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000992;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Ovary (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR548DDS] [Life stage: Adult] [TFBS]
CTCF • Myotube NGFTBAMMVSPUJB • Factorbook34755879 Motif finding Myotube TFBS Show metadata Download track Track metadata identifier NGFTBAMMVSPUJB data_source Factorbook Download track Download number_of_intervals 36,554 bp_covered 548,310 output_type transcription factor binding sites all genome_build hg38 cell_type Myotube biosample_type In vitro differentiated cells biosample_term_id CL:0002372 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 636,954 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF459OZG_YGGCCACYAGRGGGC_sorted.bed.gz processed_file_md5 3b6a5dfde3274250d6b55f1110bd4997 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF459OZG_YGGCCACYAGRGGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF459OZG_YGGCCACYAGRGGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF459OZG_YGGCCACYAGRGGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF459OZG_YGGCCACYAGRGGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ee024ff3cf5105fe7f76a32b7cfe086f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens myotube originated from skeletal muscle myoblast;Original_cell_type=myotube;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF459OZG;ENCODE_bigBed_id=ENCFF018ASF;PMID=34755879;Motif_sequence=YGGCCACYAGRGGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002372;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Myotube (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANS] [Life stage: Adult] [TFBS]
CTCF • Keratinocyte NGFTBAOJ4KEONX • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBAOJ4KEONX data_source Factorbook Download track Download number_of_intervals 65,637 bp_covered 984,555 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR812FNU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,102,046 downloaded_date 07/10/2024 release_date 10/10/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803EMZ_GCGCCCYCTGSYGGC_sorted.bed.gz processed_file_md5 18a2cafc2ca6fae117ef6614792dc7fb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803EMZ_GCGCCCYCTGSYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803EMZ_GCGCCCYCTGSYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF803EMZ_GCGCCCYCTGSYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF803EMZ_GCGCCCYCTGSYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0dc270ebba3f1210c72093755f763c63 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 5.5 days;Original_cell_type=foreskin keratinocyte;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;ENCODE_BED_id=ENCFF803EMZ;ENCODE_bigBed_id=ENCFF443ZSF;PMID=34755879;Motif_sequence=GCGCCCYCTGSYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR812FNU] [Life stage: Newborn] [TFBS]
CTCF • MM.1S NGFTBAOPJ425MN • Factorbook34755879 Motif finding MM.1S TFBS Show metadata Download track Track metadata identifier NGFTBAOPJ425MN data_source Factorbook Download track Download number_of_intervals 648 bp_covered 12,960 output_type transcription factor binding sites significant genome_build hg38 cell_type MM.1S biosample_type Cell line biosample_term_id EFO:0005724 tissue_category Blood encode_experiment_id ENCSR402IDP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 10,250 downloaded_date 07/10/2024 release_date 08/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY_filtered.bed.gz processed_file_md5 320d1a41c49fd40ecfc82ffdc4d84f57 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF457QOK_CNVBRSYGCCMYCTRSTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 10a89d6dce3dbc5953563959d658b763 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MM.1S;Original_cell_type=MM.1S;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF457QOK;ENCODE_bigBed_id=ENCFF869JMQ;PMID=34755879;Motif_sequence=CNVBRSYGCCMYCTRSTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005724;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook MM.1S (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR402IDP] [Life stage: Adult] [TFBS]
CTCF • Coronary artery NGFTBAPK6RMWZX • Factorbook34755879 Motif finding Coronary artery TFBS Show metadata Download track Track metadata identifier NGFTBAPK6RMWZX data_source Factorbook Download track Download number_of_intervals 7,300 bp_covered 80,300 output_type transcription factor binding sites all genome_build hg38 cell_type Coronary artery biosample_type Tissue biosample_term_id UBERON:0001621 tissue_category Blood Vessel encode_experiment_id ENCSR175FLL biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 102,199 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF426FCU_GGAACTGCAGS_sorted.bed.gz processed_file_md5 b02dfdc7161fe6adc7310a6be70c6db4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF426FCU_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF426FCU_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF426FCU_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF426FCU_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6ee5eff756131b2a265e816ae1a7a80f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens coronary artery tissue female adult (53 years);Original_cell_type=coronary artery;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF426FCU;ENCODE_bigBed_id=ENCFF483TFF;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001621;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Coronary artery (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR175FLL] [Life stage: Adult] [TFBS]