CTCF • Fibroblast NGFTBAQG5HTCDD • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBAQG5HTCDD data_source Factorbook Download track Download number_of_intervals 39,825 bp_covered 557,550 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ANO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 665,801 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_YGCCMYCTRSTGGC_sorted.bed.gz processed_file_md5 0fd55feda07de304a1e9e7e4fb9e2cc9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_YGCCMYCTRSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_YGCCMYCTRSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693QOO_YGCCMYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693QOO_YGCCMYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 403c8d797da675f43efe60c0d876f93e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Original_cell_type=fibroblast of lung;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF693QOO;ENCODE_bigBed_id=ENCFF356FDN;PMID=34755879;Motif_sequence=YGCCMYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANO] [TFBS]
CTCF • Epithelial cell NGFTBASS73MZU2 • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBASS73MZU2 data_source Factorbook Download track Download number_of_intervals 129 bp_covered 1,935 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id ENCSR000DVH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,651 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SDM_SYGCCMYCTGSTGGC_filtered.bed.gz processed_file_md5 b050062c5c734295427c7e415ec53b82 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SDM_SYGCCMYCTGSTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SDM_SYGCCMYCTGSTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SDM_SYGCCMYCTGSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SDM_SYGCCMYCTGSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1dec0734a08dee4b07fb7b54eaeb4584 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens kidney epithelial cell;Original_cell_type=kidney epithelial cell;Lab=John Stamatoyannopoulos, UW;System=excretory system;ENCODE_BED_id=ENCFF059SDM;ENCODE_bigBed_id=ENCFF173LWY;PMID=34755879;Motif_sequence=SYGCCMYCTGSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002518;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVH] [TFBS]
CTCF • Endothelial cell NGFTBASSKVEWA4 • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBASSKVEWA4 data_source Factorbook Download track Download number_of_intervals 1,220 bp_covered 35,380 output_type transcription factor binding sites all genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DLW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 29,626 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG_sorted.bed.gz processed_file_md5 102b348aa7660b2168d6a73547432b3f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 094b5c2f7ef90e73ddccda557f0bb8c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Vishwanath Iyer, UTA;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF601VJF;ENCODE_bigBed_id=ENCFF336GRA;PMID=34755879;Motif_sequence=GTATTRCAAYCCATTGGTRTAACWARYAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLW] [TFBS]
CTCF • GM12878 NGFTBAUEQ44INQ • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBAUEQ44INQ data_source Factorbook Download track Download number_of_intervals 801 bp_covered 23,229 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AKB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 17,373 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR_filtered.bed.gz processed_file_md5 cad81bdc5e2ecc52340f1160fb4cba5f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f177ae6929d2575166f9321e78fdaf6f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF797SDL;ENCODE_bigBed_id=ENCFF217EAX;PMID=34755879;Motif_sequence=BHVNKNCCCNNDBBGGCCASHAGRKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKB] [TFBS]
CTCF • Epithelial cell NGFTBAUTTEHOKL • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBAUTTEHOKL data_source Factorbook Download track Download number_of_intervals 32,568 bp_covered 683,928 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR000DUS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 646,243 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_GCTGCCMYCTAVWGGCCRMHW_sorted.bed.gz processed_file_md5 6fc2f1ecbfcc5eab77c86cc73d04825d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_GCTGCCMYCTAVWGGCCRMHW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_GCTGCCMYCTAVWGGCCRMHW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF757DFM_GCTGCCMYCTAVWGGCCRMHW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF757DFM_GCTGCCMYCTAVWGGCCRMHW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5ae7466ed4c48258d65ef56783a23c28 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens mammary epithelial cell female;Original_cell_type=mammary epithelial cell;Lab=John Stamatoyannopoulos, UW;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF757DFM;ENCODE_bigBed_id=ENCFF304CKV;PMID=34755879;Motif_sequence=GCTGCCMYCTAVWGGCCRMHW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUS] [TFBS]
CTCF • Vagina NGFTBAVAEL3MT2 • Factorbook34755879 Motif finding Vagina TFBS Show metadata Download track Track metadata identifier NGFTBAVAEL3MT2 data_source Factorbook Download track Download number_of_intervals 3,540 bp_covered 67,260 output_type transcription factor binding sites all genome_build hg38 cell_type Vagina biosample_type Tissue biosample_term_id UBERON:0000996 tissue_category Female Reproductive encode_experiment_id ENCSR655ECZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 68,456 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF126LRK_VGSCTGCAGTTCCHNRDNT_sorted.bed.gz processed_file_md5 c85b9dcb852b9d4daf81e685b0d4b2b4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF126LRK_VGSCTGCAGTTCCHNRDNT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF126LRK_VGSCTGCAGTTCCHNRDNT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF126LRK_VGSCTGCAGTTCCHNRDNT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF126LRK_VGSCTGCAGTTCCHNRDNT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2a9dff19b86ccd3b58ffc92dcb48b20b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens vagina tissue female adult (51 years);Original_cell_type=vagina;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF126LRK;ENCODE_bigBed_id=ENCFF902RQN;PMID=34755879;Motif_sequence=VGSCTGCAGTTCCHNRDNT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000996;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Vagina (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR655ECZ] [Life stage: Adult] [TFBS]
CTCF • H1-hESC NGFTBAVC7JX3K3 • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBAVC7JX3K3 data_source Factorbook Download track Download number_of_intervals 10,801 bp_covered 118,811 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AMF biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 151,534 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF692RPA_SCTGGAACTGC_sorted.bed.gz processed_file_md5 d05c57b06299c56b6bb5d965273dd9e8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF692RPA_SCTGGAACTGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF692RPA_SCTGGAACTGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF692RPA_SCTGGAACTGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF692RPA_SCTGGAACTGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 45b82786329299ed761b684c36281c6a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Bradley Bernstein, Broad;System=NR;ENCODE_BED_id=ENCFF692RPA;ENCODE_bigBed_id=ENCFF764RHO;PMID=34755879;Motif_sequence=SCTGGAACTGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AMF] [TFBS]
CTCF • Endothelial cell NGFTBAWPKAQHWZ • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBAWPKAQHWZ data_source Factorbook Download track Download number_of_intervals 243 bp_covered 6,561 output_type transcription factor binding sites significant genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000ALA biological_replicate 1 technical_replicate 1_1, 1_2, 1_3 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,239 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD_filtered.bed.gz processed_file_md5 1481f89b8f22e33ea16be55aa64bd06b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f2a7ba59156bfc54278aa5b6a702189a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Bradley Bernstein, Broad;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF949KVG;ENCODE_bigBed_id=ENCFF947JAB;PMID=34755879;Motif_sequence=VHKYCMNBHWDTGGCCASYAGRGGGCD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ALA] [TFBS]
CTCF • A549 NGFTBAYVSCGOFO • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBAYVSCGOFO data_source Factorbook Download track Download number_of_intervals 54,196 bp_covered 812,940 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR553UWG biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 811,555 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF469BNN_GCGCCMYCTRGTGGC_sorted.bed.gz processed_file_md5 6ea38b0d19342813d675675d09e6c24c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF469BNN_GCGCCMYCTRGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF469BNN_GCGCCMYCTRGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF469BNN_GCGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF469BNN_GCGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cd773c5751d22993741f0d02ea3ecf07 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF469BNN;ENCODE_bigBed_id=ENCFF473FFK;PMID=34755879;Motif_sequence=GCGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR553UWG] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBB2CRJKPCN • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBB2CRJKPCN data_source Factorbook Download track Download number_of_intervals 141 bp_covered 2,115 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000DNA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,762 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF467CVV_RSYGCCMYCTRSTGG_filtered.bed.gz processed_file_md5 d614fe750bcba9749c1528409b47a972 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF467CVV_RSYGCCMYCTRSTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF467CVV_RSYGCCMYCTRSTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF467CVV_RSYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF467CVV_RSYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 42034e9f7b72d5808ae2023f4cefc8a8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Vishwanath Iyer, UTA;System=respiratory system;ENCODE_BED_id=ENCFF467CVV;ENCODE_bigBed_id=ENCFF182TCQ;PMID=34755879;Motif_sequence=RSYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNA] [Life stage: Adult] [TFBS]
CTCF • Bipolar neuron NGFTBB2PQMKOOH • Factorbook34755879 Motif finding Bipolar neuron TFBS Show metadata Download track Track metadata identifier NGFTBB2PQMKOOH data_source Factorbook Download track Download number_of_intervals 27,375 bp_covered 301,125 output_type transcription factor binding sites all genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR066BZZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 316,083 downloaded_date 07/10/2024 release_date 11/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_GGMACTGCAGS_sorted.bed.gz processed_file_md5 f47a127dd9ba6f5b3e6e63f62ec99322 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_GGMACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_GGMACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF614PAB_GGMACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF614PAB_GGMACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6909ca2e450ace93fa9b177695c3c26f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Original_cell_type=bipolar neuron;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF614PAB;ENCODE_bigBed_id=ENCFF728HRR;PMID=34755879;Motif_sequence=GGMACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Bipolar neuron (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR066BZZ] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBB344OP44Y • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBB344OP44Y data_source Factorbook Download track Download number_of_intervals 39,790 bp_covered 477,480 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Eye encode_experiment_id ENCSR000DVI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 602,821 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_GCCMYCTRGTGG_sorted.bed.gz processed_file_md5 fa0af7c5a3fe7aa4b501250fd41a4b72 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_GCCMYCTRGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_GCCMYCTRGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF513ZBA_GCCMYCTRGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF513ZBA_GCCMYCTRGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c020b7ec487ae19bfe568e15e78e45d9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens retinal pigment epithelial cell;Original_cell_type=retinal pigment epithelial cell;Lab=John Stamatoyannopoulos, UW;System=sensory system;ENCODE_BED_id=ENCFF513ZBA;ENCODE_bigBed_id=ENCFF381TYM;PMID=34755879;Motif_sequence=GCCMYCTRGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002586;is_hg38_lifted=no system_category Sensory life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVI] [TFBS]
CTCF • A549 NGFTBB3EQVJJDU • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBB3EQVJJDU data_source Factorbook Download track Download number_of_intervals 1,175 bp_covered 24,675 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR432AXE biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 16,807 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF824SNC_NVBRSYGCCMYCTRGTGGCCR_filtered.bed.gz processed_file_md5 84172728316fe7b268193d719a0d7a7b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF824SNC_NVBRSYGCCMYCTRGTGGCCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF824SNC_NVBRSYGCCMYCTRGTGGCCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF824SNC_NVBRSYGCCMYCTRGTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF824SNC_NVBRSYGCCMYCTRGTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 27515ebe91c2fdf11216bedc1fa6fd5d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF824SNC;ENCODE_bigBed_id=ENCFF576PHN;PMID=34755879;Motif_sequence=NVBRSYGCCMYCTRGTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR432AXE] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBB3IIFJ44X • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBB3IIFJ44X data_source Factorbook Download track Download number_of_intervals 48,389 bp_covered 725,835 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000DYD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 839,957 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF005MCX_RCCASYAGRGGGCRC_sorted.bed.gz processed_file_md5 eefd46240bb6db56c39df2d1994b211b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF005MCX_RCCASYAGRGGGCRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF005MCX_RCCASYAGRGGGCRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF005MCX_RCCASYAGRGGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF005MCX_RCCASYAGRGGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6f9da25db96b9e4f25fb5ccd5f54520d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF005MCX;ENCODE_bigBed_id=ENCFF434LUY;PMID=34755879;Motif_sequence=RCCASYAGRGGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYD] [Life stage: Adult] [TFBS]
CTCF • LNCaP clone FGC NGFTBB3YRIDY5Q • Factorbook34755879 Motif finding LNCaP clone FGC TFBS Show metadata Download track Track metadata identifier NGFTBB3YRIDY5Q data_source Factorbook Download track Download number_of_intervals 41,198 bp_covered 617,970 output_type transcription factor binding sites all genome_build hg38 cell_type LNCaP clone FGC biosample_type Cell line biosample_term_id EFO:0005726 tissue_category Male Reproductive encode_experiment_id ENCSR000DME biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 717,865 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229ROH_GCCASYAGRKGGCGC_sorted.bed.gz processed_file_md5 e3709004775d3b0d63e2ea79d8f27e19 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229ROH_GCCASYAGRKGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229ROH_GCCASYAGRKGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF229ROH_GCCASYAGRKGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF229ROH_GCCASYAGRKGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 aa07466ee1cd6cc01bbe3f55cee4633a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCaP clone FGC treated with 1 nM 17_-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours;Original_cell_type=LNCaP clone FGC;Lab=Vishwanath Iyer, UTA;System=reproductive system;ENCODE_BED_id=ENCFF229ROH;ENCODE_bigBed_id=ENCFF855VBR;PMID=34755879;Motif_sequence=GCCASYAGRKGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005726;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCaP clone FGC (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DME] [Life stage: Adult] [TFBS]
CTCF • B cell NGFTBB43XE222V • Factorbook34755879 Motif finding B cell TFBS Show metadata Download track Track metadata identifier NGFTBB43XE222V data_source Factorbook Download track Download number_of_intervals 6,340 bp_covered 190,200 output_type transcription factor binding sites all genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR000AUV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 127,136 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG_sorted.bed.gz processed_file_md5 08ac5542b0ec499e75ad708c4c1c7ad3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cfca6bdfc733c3a31e35fd9263d8ef8b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens B cell female adult (27 years) and female adult (43 years);Original_cell_type=B cell;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF390ICZ;ENCODE_bigBed_id=ENCFF738RTM;PMID=34755879;Motif_sequence=TTYYYMTTTGCCWGCTGGYGCVATGYTAGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook B cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUV] [Life stage: Adult] [TFBS]
CTCF • Astrocyte NGFTBB5RJIAH4F • Factorbook34755879 Motif finding Astrocyte TFBS Show metadata Download track Track metadata identifier NGFTBB5RJIAH4F data_source Factorbook Download track Download number_of_intervals 36,977 bp_covered 628,609 output_type transcription factor binding sites all genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000AOO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 689,516 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF450EVR_RSYGCCMYCTRGTGGYM_sorted.bed.gz processed_file_md5 55823c1d19be1fa5a6809e3b47ca120b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF450EVR_RSYGCCMYCTRGTGGYM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF450EVR_RSYGCCMYCTRGTGGYM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF450EVR_RSYGCCMYCTRGTGGYM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF450EVR_RSYGCCMYCTRGTGGYM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2661d5d78fc3aa595b199329a6daa757 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens astrocyte;Original_cell_type=astrocyte;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF450EVR;ENCODE_bigBed_id=ENCFF042YJV;PMID=34755879;Motif_sequence=RSYGCCMYCTRGTGGYM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000127;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name Factorbook Astrocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AOO] [TFBS]
CTCF • AG09319 NGFTBB5XKDLS22 • Factorbook34755879 Motif finding AG09319 TFBS Show metadata Download track Track metadata identifier NGFTBB5XKDLS22 data_source Factorbook Download track Download number_of_intervals 122 bp_covered 1,830 output_type transcription factor binding sites significant genome_build hg38 cell_type AG09319 biosample_type Cell line biosample_term_id CLO:0021754 tissue_category Connective Tissue encode_experiment_id ENCSR000DPS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,580 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF287MQJ_GCCASYAGRKGGCRS_filtered.bed.gz processed_file_md5 148ac23c3ee98ff44fd3c2654b6bc3a2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF287MQJ_GCCASYAGRKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF287MQJ_GCCASYAGRKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF287MQJ_GCCASYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF287MQJ_GCCASYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e4aaaffb748e135514c3e85de762828b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG09319;Original_cell_type=AG09319;Lab=John Stamatoyannopoulos, UW;System=digestive system;ENCODE_BED_id=ENCFF287MQJ;ENCODE_bigBed_id=ENCFF401ZTN;PMID=34755879;Motif_sequence=GCCASYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021754;is_hg38_lifted=no system_category Skeletal life_stage Adult track_name Factorbook AG09319 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPS] [Life stage: Adult] [TFBS]
CTCF • Stomach NGFTBBBGBSQXQ4 • Factorbook34755879 Motif finding Stomach TFBS Show metadata Download track Track metadata identifier NGFTBBBGBSQXQ4 data_source Factorbook Download track Download number_of_intervals 616 bp_covered 11,704 output_type transcription factor binding sites significant genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id ENCSR618QYE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 10,872 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533OIH_NVBRSYGCCMCCTGGTGGC_filtered.bed.gz processed_file_md5 22f86492228bf3c8c10d3e6e2e8509e9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533OIH_NVBRSYGCCMCCTGGTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533OIH_NVBRSYGCCMCCTGGTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF533OIH_NVBRSYGCCMCCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF533OIH_NVBRSYGCCMCCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3aabe59a115e11dea36e6c76c533e6c7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens stomach tissue male adult (37 years);Original_cell_type=stomach;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF533OIH;ENCODE_bigBed_id=ENCFF041WNW;PMID=34755879;Motif_sequence=NVBRSYGCCMCCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000945;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Stomach (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR618QYE] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTBBD6NX6RYY • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBBD6NX6RYY data_source Factorbook Download track Download number_of_intervals 9,341 bp_covered 196,161 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DRZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 185,513 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_TGAGCNCCMCCTKGTGTCCTG_sorted.bed.gz processed_file_md5 d0f949025ea6e762bca4f2a9eb951016 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_TGAGCNCCMCCTKGTGTCCTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_TGAGCNCCMCCTKGTGTCCTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF951PEM_TGAGCNCCMCCTKGTGTCCTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF951PEM_TGAGCNCCMCCTKGTGTCCTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e9b480695752040a5cef5decd5a448e4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF951PEM;ENCODE_bigBed_id=ENCFF485TGR;PMID=34755879;Motif_sequence=TGAGCNCCMCCTKGTGTCCTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRZ] [TFBS]