CTCF • K562 NGFTBBDGRDGD5O • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBBDGRDGD5O data_source Factorbook Download track Download number_of_intervals 127 bp_covered 1,905 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BPJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,554 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF582SNT_CCASCAGRGGGCRCY_filtered.bed.gz processed_file_md5 393a038a9ef6ced5e707626da22f057b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF582SNT_CCASCAGRGGGCRCY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF582SNT_CCASCAGRGGGCRCY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF582SNT_CCASCAGRGGGCRCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF582SNT_CCASCAGRGGGCRCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e4429e0e98de85dcd15caf8829e88d42 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF582SNT;ENCODE_bigBed_id=ENCFF111MGE;PMID=34755879;Motif_sequence=CCASCAGRGGGCRCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPJ] [Life stage: Adult] [TFBS]
CTCF • SK-N-SH NGFTBBE2VAY44F • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBBE2VAY44F data_source Factorbook Download track Download number_of_intervals 49,522 bp_covered 742,830 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000DXQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 828,606 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF727JSC_RGYGCCMYCTGGTGG_sorted.bed.gz processed_file_md5 b3d5cd186a0b937efdc3851926090950 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF727JSC_RGYGCCMYCTGGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF727JSC_RGYGCCMYCTGGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF727JSC_RGYGCCMYCTGGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF727JSC_RGYGCCMYCTGGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 79a8ef4b7471afaa02bade195ac35600 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Original_cell_type=SK-N-SH;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF727JSC;ENCODE_bigBed_id=ENCFF812MNO;PMID=34755879;Motif_sequence=RGYGCCMYCTGGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXQ] [Life stage: Child] [TFBS]
CTCF • MCF-7 NGFTBBEOUATITE • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBBEOUATITE data_source Factorbook Download track Download number_of_intervals 20,717 bp_covered 165,736 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 210,182 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_CWGDGCWG_sorted.bed.gz processed_file_md5 e8e3ea81451e0f86621e322c09589d7d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_CWGDGCWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_CWGDGCWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF198YOJ_CWGDGCWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF198YOJ_CWGDGCWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fd72232059cb3f480b25808c31e84fca data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF198YOJ;ENCODE_bigBed_id=ENCFF844STM;PMID=34755879;Motif_sequence=CWGDGCWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMO] [Life stage: Adult] [TFBS]
CTCF • Transverse colon NGFTBBJPXCLVYH • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTBBJPXCLVYH data_source Factorbook Download track Download number_of_intervals 35,250 bp_covered 493,500 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR102CSD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 520,939 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_CCMCCTGSTGGCCR_sorted.bed.gz processed_file_md5 f5bca9dcc15ede023122307c62709b8b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_CCMCCTGSTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_CCMCCTGSTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF292GYB_CCMCCTGSTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF292GYB_CCMCCTGSTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3261261bdd4720b480c1eca5a10b6fdc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue male adult (37 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF292GYB;ENCODE_bigBed_id=ENCFF749DPF;PMID=34755879;Motif_sequence=CCMCCTGSTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR102CSD] [Life stage: Adult] [TFBS]
CTCF • LNCaP clone FGC NGFTBBKOCE5W4R • Factorbook34755879 Motif finding LNCaP clone FGC TFBS Show metadata Download track Track metadata identifier NGFTBBKOCE5W4R data_source Factorbook Download track Download number_of_intervals 932 bp_covered 19,572 output_type transcription factor binding sites significant genome_build hg38 cell_type LNCaP clone FGC biosample_type Cell line biosample_term_id EFO:0005726 tissue_category Male Reproductive encode_experiment_id ENCSR000DMF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 16,534 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF596RKE_YRSYGCCMYCTKSTGGYCAND_filtered.bed.gz processed_file_md5 37a2bc7258810e5069c59d2586f2340a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF596RKE_YRSYGCCMYCTKSTGGYCAND_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF596RKE_YRSYGCCMYCTKSTGGYCAND_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF596RKE_YRSYGCCMYCTKSTGGYCAND.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF596RKE_YRSYGCCMYCTKSTGGYCAND.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4592a23a86e7be377be6d6f569446491 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCaP clone FGC;Original_cell_type=LNCaP clone FGC;Lab=Vishwanath Iyer, UTA;System=reproductive system;ENCODE_BED_id=ENCFF596RKE;ENCODE_bigBed_id=ENCFF519YVI;PMID=34755879;Motif_sequence=YRSYGCCMYCTKSTGGYCAND;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005726;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCaP clone FGC (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMF] [Life stage: Adult] [TFBS]
CTCF • Prostate gland NGFTBBKXOP6W6B • Factorbook34755879 Motif finding Prostate gland TFBS Show metadata Download track Track metadata identifier NGFTBBKXOP6W6B data_source Factorbook Download track Download number_of_intervals 25,425 bp_covered 381,375 output_type transcription factor binding sites all genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR829HTO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 423,306 downloaded_date 07/10/2024 release_date 11/29/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_TGGCCASHAGGKGGC_sorted.bed.gz processed_file_md5 6fc72ddf7432d7a9b058003e1bcba287 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_TGGCCASHAGGKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_TGGCCASHAGGKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF771ZYH_TGGCCASHAGGKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF771ZYH_TGGCCASHAGGKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5bede384445a915cd374f960f9d9bed3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Original_cell_type=prostate gland;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF771ZYH;ENCODE_bigBed_id=ENCFF655GBO;PMID=34755879;Motif_sequence=TGGCCASHAGGKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Prostate gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR829HTO] [Life stage: Adult] [TFBS]
CTCF • Left ventricle NGFTBBMIYICH5A • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTBBMIYICH5A data_source Factorbook Download track Download number_of_intervals 426 bp_covered 8,094 output_type transcription factor binding sites significant genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR791AYW biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,839 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_CCACCAGRKGGCRSYVBVG_filtered.bed.gz processed_file_md5 ab0e8a465083954f182659b21c26a1e4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_CCACCAGRKGGCRSYVBVG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_CCACCAGRKGGCRSYVBVG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF274NOI_CCACCAGRKGGCRSYVBVG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF274NOI_CCACCAGRKGGCRSYVBVG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 848af8d18245515a491fcf9c7d83db50 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (51 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF274NOI;ENCODE_bigBed_id=ENCFF987PUT;PMID=34755879;Motif_sequence=CCACCAGRKGGCRSYVBVG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR791AYW] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBBOJ5QPKN2 • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBBOJ5QPKN2 data_source Factorbook Download track Download number_of_intervals 10,061 bp_covered 150,915 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Eye encode_experiment_id ENCSR000DVI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 172,112 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_RSCTGCAGTKCCHSH_sorted.bed.gz processed_file_md5 216aa707b883e590097418763105485b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_RSCTGCAGTKCCHSH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_RSCTGCAGTKCCHSH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF513ZBA_RSCTGCAGTKCCHSH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF513ZBA_RSCTGCAGTKCCHSH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eb0a17e4fef983d81415f97c0a430f63 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens retinal pigment epithelial cell;Original_cell_type=retinal pigment epithelial cell;Lab=John Stamatoyannopoulos, UW;System=sensory system;ENCODE_BED_id=ENCFF513ZBA;ENCODE_bigBed_id=ENCFF381TYM;PMID=34755879;Motif_sequence=RSCTGCAGTKCCHSH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002586;is_hg38_lifted=no system_category Sensory life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVI] [TFBS]
CTCF • A549 NGFTBBOJBVKA2Y • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBBOJBVKA2Y data_source Factorbook Download track Download number_of_intervals 424 bp_covered 8,056 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR384KPP biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,593 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF046WYN_GCCACYAGRKGGCRCYVBN_filtered.bed.gz processed_file_md5 c472ba214435ea4fc4cb05eaf5559968 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF046WYN_GCCACYAGRKGGCRCYVBN_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF046WYN_GCCACYAGRKGGCRCYVBN_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF046WYN_GCCACYAGRKGGCRCYVBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF046WYN_GCCACYAGRKGGCRCYVBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d68a10a42710cc24ef179f2b71c17337 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 2 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF046WYN;ENCODE_bigBed_id=ENCFF026RBQ;PMID=34755879;Motif_sequence=GCCACYAGRKGGCRCYVBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR384KPP] [Life stage: Adult] [TFBS]
CTCF • Osteoblast NGFTBBONAOWO53 • Factorbook34755879 Motif finding Osteoblast TFBS Show metadata Download track Track metadata identifier NGFTBBONAOWO53 data_source Factorbook Download track Download number_of_intervals 44,751 bp_covered 671,265 output_type transcription factor binding sites all genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id ENCSR000APF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 737,686 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF183VNT_YGRCCACYAGRGGGC_sorted.bed.gz processed_file_md5 8306a70bf0884a7e31b2fb6bd014be64 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF183VNT_YGRCCACYAGRGGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF183VNT_YGRCCACYAGRGGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF183VNT_YGRCCACYAGRGGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF183VNT_YGRCCACYAGRGGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 25ae41a800382a96afa7f6794d17733e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens osteoblast;Original_cell_type=osteoblast;Lab=Bradley Bernstein, Broad;System=skeletal system;ENCODE_BED_id=ENCFF183VNT;ENCODE_bigBed_id=ENCFF491ZJZ;PMID=34755879;Motif_sequence=YGRCCACYAGRGGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000062;is_hg38_lifted=no system_category Skeletal life_stage Unknown track_name Factorbook Osteoblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000APF] [TFBS]
CTCF • Keratinocyte NGFTBBPGGNXGJV • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBBPGGNXGJV data_source Factorbook Download track Download number_of_intervals 44,097 bp_covered 661,455 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR036EGV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 728,370 downloaded_date 07/10/2024 release_date 10/10/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_YGCCMYCTRSTGGCY_sorted.bed.gz processed_file_md5 16d75f2097c39d46834fc97a9e69d5c8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_YGCCMYCTRSTGGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_YGCCMYCTRSTGGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF645QAX_YGCCMYCTRSTGGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF645QAX_YGCCMYCTRSTGGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 89acbd024f90c9945c9a56a74d6adc74 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2.5 days;Original_cell_type=foreskin keratinocyte;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;ENCODE_BED_id=ENCFF645QAX;ENCODE_bigBed_id=ENCFF246DDI;PMID=34755879;Motif_sequence=YGCCMYCTRSTGGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR036EGV] [Life stage: Newborn] [TFBS]
CTCF • MCF-7 NGFTBBQVEYSL5B • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBBQVEYSL5B data_source Factorbook Download track Download number_of_intervals 39,357 bp_covered 826,497 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 741,259 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_WSHBSCTGCWGGHMSHKCTGY_sorted.bed.gz processed_file_md5 7382557100e001b1a5418a25da7f8ca2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_WSHBSCTGCWGGHMSHKCTGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_WSHBSCTGCWGGHMSHKCTGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF198YOJ_WSHBSCTGCWGGHMSHKCTGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF198YOJ_WSHBSCTGCWGGHMSHKCTGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2aeec4b2b1451aa7968545ee8e6813c7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF198YOJ;ENCODE_bigBed_id=ENCFF844STM;PMID=34755879;Motif_sequence=WSHBSCTGCWGGHMSHKCTGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMO] [Life stage: Adult] [TFBS]
CTCF • OCI-LY3 NGFTBBQXF5BGYC • Factorbook34755879 Motif finding OCI-LY3 TFBS Show metadata Download track Track metadata identifier NGFTBBQXF5BGYC data_source Factorbook Download track Download number_of_intervals 10,528 bp_covered 84,224 output_type transcription factor binding sites all genome_build hg38 cell_type OCI-LY3 biosample_type Cell line biosample_term_id EFO:0006710 tissue_category Blood encode_experiment_id ENCSR756ZKG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 105,643 downloaded_date 07/10/2024 release_date 07/11/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF787BQX_CTGCWGTK_sorted.bed.gz processed_file_md5 59487b6140813a4ee9181a761e7d869f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF787BQX_CTGCWGTK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF787BQX_CTGCWGTK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF787BQX_CTGCWGTK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF787BQX_CTGCWGTK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 da42ed07a005b328379a5b9cfc251429 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY3;Original_cell_type=OCI-LY3;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF787BQX;ENCODE_bigBed_id=ENCFF939BYJ;PMID=34755879;Motif_sequence=CTGCWGTK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006710;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook OCI-LY3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR756ZKG] [Life stage: Adult] [TFBS]
CTCF • WERI-Rb-1 NGFTBBSKWOKCQD • Factorbook34755879 Motif finding WERI-Rb-1 TFBS Show metadata Download track Track metadata identifier NGFTBBSKWOKCQD data_source Factorbook Download track Download number_of_intervals 21,253 bp_covered 233,783 output_type transcription factor binding sites all genome_build hg38 cell_type WERI-Rb-1 biosample_type Cell line biosample_term_id EFO:0005715 tissue_category Eye encode_experiment_id ENCSR000DXW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 297,118 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_CTGCWGYYBCH_sorted.bed.gz processed_file_md5 6bd46ca030afcbd6c01ef991ed77bc86 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_CTGCWGYYBCH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_CTGCWGYYBCH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF124UXX_CTGCWGYYBCH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF124UXX_CTGCWGYYBCH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5c14e12d382c9bd01225c97cd32eb453 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens WERI-Rb-1;Original_cell_type=WERI-Rb-1;Lab=John Stamatoyannopoulos, UW;System=sensory system;ENCODE_BED_id=ENCFF124UXX;ENCODE_bigBed_id=ENCFF349QKF;PMID=34755879;Motif_sequence=CTGCWGYYBCH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005715;is_hg38_lifted=no system_category Sensory life_stage Child track_name Factorbook WERI-Rb-1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXW] [Life stage: Child] [TFBS]
CTCF • A549 NGFTBBSW6YPI3X • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBBSW6YPI3X data_source Factorbook Download track Download number_of_intervals 295 bp_covered 5,015 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000DPF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,099 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF723DCX_GGCCACYAGRGGGCRSY_filtered.bed.gz processed_file_md5 492ccaed75431df7ddaa0bf7bcb97ae3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF723DCX_GGCCACYAGRGGGCRSY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF723DCX_GGCCACYAGRGGGCRSY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF723DCX_GGCCACYAGRGGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF723DCX_GGCCACYAGRGGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dab77a00080a8ef29846c69bd019ef5a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549;Original_cell_type=A549;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF723DCX;ENCODE_bigBed_id=ENCFF034FVO;PMID=34755879;Motif_sequence=GGCCACYAGRGGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPF] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBBVJSYHKLT • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBBVJSYHKLT data_source Factorbook Download track Download number_of_intervals 10,083 bp_covered 110,913 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id ENCSR000DXD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 143,602 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF996IMS_GHACTGCAGSC_sorted.bed.gz processed_file_md5 86312c28dc6ffdcd35156be5de173abc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF996IMS_GHACTGCAGSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF996IMS_GHACTGCAGSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF996IMS_GHACTGCAGSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF996IMS_GHACTGCAGSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 224b4e927b670bc764caf29295e4f6cf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens epithelial cell of proximal tubule;Original_cell_type=epithelial cell of proximal tubule;Lab=John Stamatoyannopoulos, UW;System=excretory system;ENCODE_BED_id=ENCFF996IMS;ENCODE_bigBed_id=ENCFF708UDD;PMID=34755879;Motif_sequence=GHACTGCAGSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002306;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXD] [TFBS]
CTCF • Aorta NGFTBBVT7QLGNT • Factorbook34755879 Motif finding Aorta TFBS Show metadata Download track Track metadata identifier NGFTBBVT7QLGNT data_source Factorbook Download track Download number_of_intervals 38,490 bp_covered 615,840 output_type transcription factor binding sites all genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id ENCSR668BTN biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 658,256 downloaded_date 07/10/2024 release_date 03/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF891COF_SYGCCMYCTRGTGGYC_sorted.bed.gz processed_file_md5 f0f2f649f2244d6f215d4ef62cf0194e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF891COF_SYGCCMYCTRGTGGYC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF891COF_SYGCCMYCTRGTGGYC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF891COF_SYGCCMYCTRGTGGYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF891COF_SYGCCMYCTRGTGGYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c9a60e56c3c7c327cc00c18a0f5cb4bb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thoracic aorta tissue male adult (37 years);Original_cell_type=thoracic aorta;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF891COF;ENCODE_bigBed_id=ENCFF012WJQ;PMID=34755879;Motif_sequence=SYGCCMYCTRGTGGYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001515;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Aorta (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR668BTN] [Life stage: Adult] [TFBS]
CTCF • AG04450 NGFTBBWGWLS37E • Factorbook34755879 Motif finding AG04450 TFBS Show metadata Download track Track metadata identifier NGFTBBWGWLS37E data_source Factorbook Download track Download number_of_intervals 9,029 bp_covered 72,232 output_type transcription factor binding sites all genome_build hg38 cell_type AG04450 biosample_type Cell line biosample_term_id EFO:0006270 tissue_category Lung encode_experiment_id ENCSR000DPM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 95,565 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_CAGCCWKG_sorted.bed.gz processed_file_md5 2c01b06436e1b3c4197313d660c3102c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_CAGCCWKG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_CAGCCWKG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF873FBD_CAGCCWKG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF873FBD_CAGCCWKG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 057742e981c64a66e182db816eeddef4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG04450;Original_cell_type=AG04450;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF873FBD;ENCODE_bigBed_id=ENCFF116DJL;PMID=34755879;Motif_sequence=CAGCCWKG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006270;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name Factorbook AG04450 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPM] [Life stage: Embryonic] [TFBS]
CTCF • Transverse colon NGFTBBXALWPUVR • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTBBXALWPUVR data_source Factorbook Download track Download number_of_intervals 3,408 bp_covered 61,344 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR558HTE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 61,909 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_RRNBYKGGAAYTGCAGCC_sorted.bed.gz processed_file_md5 04ae568466e21afd3e172359641d6472 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_RRNBYKGGAAYTGCAGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_RRNBYKGGAAYTGCAGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF613UQP_RRNBYKGGAAYTGCAGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF613UQP_RRNBYKGGAAYTGCAGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e8a5d30f9210ef2f2e98914d63eb3d14 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue female adult (51 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF613UQP;ENCODE_bigBed_id=ENCFF558VAH;PMID=34755879;Motif_sequence=RRNBYKGGAAYTGCAGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR558HTE] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBBXXHDG77Z • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBBXXHDG77Z data_source Factorbook Download track Download number_of_intervals 5,866 bp_covered 64,526 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR000DUS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 85,448 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_RGAACTGCAGS_sorted.bed.gz processed_file_md5 23d9b5571743415ce38de92ff0c9506f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_RGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF757DFM_RGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF757DFM_RGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF757DFM_RGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 caf7b58506ff8ec3bfe6ea3ab567e438 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens mammary epithelial cell female;Original_cell_type=mammary epithelial cell;Lab=John Stamatoyannopoulos, UW;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF757DFM;ENCODE_bigBed_id=ENCFF304CKV;PMID=34755879;Motif_sequence=RGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUS] [TFBS]