CTCF • GM13977 NGFTBC3BOA6K57 • Factorbook34755879 Motif finding GM13977 TFBS Show metadata Download track Track metadata identifier NGFTBC3BOA6K57 data_source Factorbook Download track Download number_of_intervals 46,450 bp_covered 696,750 output_type transcription factor binding sites all genome_build hg38 cell_type GM13977 biosample_type Cell line biosample_term_id EFO:0005346 tissue_category Blood encode_experiment_id ENCSR000DLB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 805,663 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612VSV_GCGCCCCCTGSYGGC_sorted.bed.gz processed_file_md5 17f0ec216b627911959ca7a178798721 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612VSV_GCGCCCCCTGSYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612VSV_GCGCCCCCTGSYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF612VSV_GCGCCCCCTGSYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF612VSV_GCGCCCCCTGSYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0ccb8ecd598c4864e37a7e42608f4806 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM13977;Original_cell_type=GM13977;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF612VSV;ENCODE_bigBed_id=ENCFF528ESQ;PMID=34755879;Motif_sequence=GCGCCCCCTGSYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005346;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM13977 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLB] [Life stage: Adult] [TFBS]
CTCF • Thyroid gland NGFTBC56KIOLTQ • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBC56KIOLTQ data_source Factorbook Download track Download number_of_intervals 40,720 bp_covered 610,800 output_type transcription factor binding sites all genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR955BIB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 679,367 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CCRSCAGGGGGCRSY_sorted.bed.gz processed_file_md5 870151749ffbd18d0692d4f3fc2a5187 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CCRSCAGGGGGCRSY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CCRSCAGGGGGCRSY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF728ZGC_CCRSCAGGGGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF728ZGC_CCRSCAGGGGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0e5515beace927a90a30c174be7d038f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue female adult (51 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF728ZGC;ENCODE_bigBed_id=ENCFF204HWS;PMID=34755879;Motif_sequence=CCRSCAGGGGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR955BIB] [Life stage: Adult] [TFBS]
CTCF • OCI-LY1 NGFTBC72LPD6MZ • Factorbook34755879 Motif finding OCI-LY1 TFBS Show metadata Download track Track metadata identifier NGFTBC72LPD6MZ data_source Factorbook Download track Download number_of_intervals 60,996 bp_covered 975,936 output_type transcription factor binding sites all genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id ENCSR072EUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,037,763 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF029TZI_RGYGCCMYCTRSTGGY_sorted.bed.gz processed_file_md5 3d5f1b6fe37362298e3dd69b6a9de39d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF029TZI_RGYGCCMYCTRSTGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF029TZI_RGYGCCMYCTRSTGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF029TZI_RGYGCCMYCTRSTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF029TZI_RGYGCCMYCTRSTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1d6bcab836202077097aef0e418ef5b3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY1;Original_cell_type=OCI-LY1;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF029TZI;ENCODE_bigBed_id=ENCFF455ESK;PMID=34755879;Motif_sequence=RGYGCCMYCTRSTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook OCI-LY1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR072EUE] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBCB2LBZJEC • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBCB2LBZJEC data_source Factorbook Download track Download number_of_intervals 30,622 bp_covered 459,330 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Breast encode_experiment_id ENCSR000ALV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 552,597 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059YXD_GCCMYCTRGTGGCMR_sorted.bed.gz processed_file_md5 53119e5995490168443e599b4277042d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059YXD_GCCMYCTRGTGGCMR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059YXD_GCCMYCTRGTGGCMR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059YXD_GCCMYCTRGTGGCMR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059YXD_GCCMYCTRGTGGCMR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4475729aa42b81c840895eb7e66022fd data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens mammary epithelial cell female adult (50 years);Original_cell_type=mammary epithelial cell;Lab=Bradley Bernstein, Broad;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF059YXD;ENCODE_bigBed_id=ENCFF873ERE;PMID=34755879;Motif_sequence=GCCMYCTRGTGGCMR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002327;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ALV] [Life stage: Adult] [TFBS]
CTCF • NB4 NGFTBCBBWEA5O2 • Factorbook34755879 Motif finding NB4 TFBS Show metadata Download track Track metadata identifier NGFTBCBBWEA5O2 data_source Factorbook Download track Download number_of_intervals 7,301 bp_covered 80,311 output_type transcription factor binding sites all genome_build hg38 cell_type NB4 biosample_type Cell line biosample_term_id EFO:0002798 tissue_category Blood encode_experiment_id ENCSR000DWN biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 109,888 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF298KGE_DGGAACTGCAG_sorted.bed.gz processed_file_md5 cf71a0fe130f8cf9dc61a01300342af4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF298KGE_DGGAACTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF298KGE_DGGAACTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF298KGE_DGGAACTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF298KGE_DGGAACTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 275abe006370270a119ae6a9ad3ef15d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens NB4;Original_cell_type=NB4;Lab=John Stamatoyannopoulos, UW;System=skeletal system,immune system;ENCODE_BED_id=ENCFF298KGE;ENCODE_bigBed_id=ENCFF155DNY;PMID=34755879;Motif_sequence=DGGAACTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002798;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook NB4 (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWN] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBCCMSY3CN2 • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBCCMSY3CN2 data_source Factorbook Download track Download number_of_intervals 58 bp_covered 870 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Lung encode_experiment_id ENCSR000DXI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 919 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF734FWK_RSCGCCMYCTGSTGG_filtered.bed.gz processed_file_md5 fe502865ef874e56fa2fc76c2d2bfd76 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF734FWK_RSCGCCMYCTGSTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF734FWK_RSCGCCMYCTGSTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF734FWK_RSCGCCMYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF734FWK_RSCGCCMYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f4fe2a40df73a0d062a8b70de68542b4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens bronchial epithelial cell;Original_cell_type=bronchial epithelial cell;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF734FWK;ENCODE_bigBed_id=ENCFF500SEA;PMID=34755879;Motif_sequence=RSCGCCMYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002328;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXI] [TFBS]
CTCF • NCI-H929 NGFTBCDZFC2VWN • Factorbook34755879 Motif finding NCI-H929 TFBS Show metadata Download track Track metadata identifier NGFTBCDZFC2VWN data_source Factorbook Download track Download number_of_intervals 9,655 bp_covered 144,825 output_type transcription factor binding sites all genome_build hg38 cell_type NCI-H929 biosample_type Cell line biosample_term_id EFO:0001221 tissue_category Immune encode_experiment_id ENCSR634OAQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 134,537 downloaded_date 07/10/2024 release_date 11/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF413RNS_RGCTGCARTTCYNCM_sorted.bed.gz processed_file_md5 67cc08b831b40082c17dee7afc101c73 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF413RNS_RGCTGCARTTCYNCM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF413RNS_RGCTGCARTTCYNCM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF413RNS_RGCTGCARTTCYNCM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF413RNS_RGCTGCARTTCYNCM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2286db0b4f380bdfff92043621c0878f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens NCI-H929;Original_cell_type=NCI-H929;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF413RNS;ENCODE_bigBed_id=ENCFF728FKA;PMID=34755879;Motif_sequence=RGCTGCARTTCYNCM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001221;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook NCI-H929 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR634OAQ] [Life stage: Adult] [TFBS]
CTCF • Left ventricle NGFTBCG2QHZPL4 • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTBCG2QHZPL4 data_source Factorbook Download track Download number_of_intervals 8 bp_covered 144 output_type transcription factor binding sites significant genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR791AYW biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 462 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_DBTGGCCASCAGGKGGCR_filtered.bed.gz processed_file_md5 c100240fcce1d5c3f598d01594b8c93c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_DBTGGCCASCAGGKGGCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF274NOI_DBTGGCCASCAGGKGGCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF274NOI_DBTGGCCASCAGGKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF274NOI_DBTGGCCASCAGGKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 134fe42176a4ef429b3cd1e64e3f6497 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (51 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF274NOI;ENCODE_bigBed_id=ENCFF987PUT;PMID=34755879;Motif_sequence=DBTGGCCASCAGGKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR791AYW] [Life stage: Adult] [TFBS]
CTCF • DOHH2 NGFTBCGMOETA4O • Factorbook34755879 Motif finding DOHH2 TFBS Show metadata Download track Track metadata identifier NGFTBCGMOETA4O data_source Factorbook Download track Download number_of_intervals 66,088 bp_covered 991,320 output_type transcription factor binding sites all genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR084RDK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 936,377 downloaded_date 07/10/2024 release_date 07/11/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF102KXV_RGCGCCMCCTRSTGG_sorted.bed.gz processed_file_md5 b88722acefd25d29e608f38c05473f2e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF102KXV_RGCGCCMCCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF102KXV_RGCGCCMCCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF102KXV_RGCGCCMCCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF102KXV_RGCGCCMCCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 75f7d391cd1503561ab23bcbdd18f1e9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens DOHH2;Original_cell_type=DOHH2;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF102KXV;ENCODE_bigBed_id=ENCFF087WWA;PMID=34755879;Motif_sequence=RGCGCCMCCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook DOHH2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR084RDK] [Life stage: Adult] [TFBS]
CTCF • GM06990 NGFTBCH5BPLQUR • Factorbook34755879 Motif finding GM06990 TFBS Show metadata Download track Track metadata identifier NGFTBCH5BPLQUR data_source Factorbook Download track Download number_of_intervals 50,064 bp_covered 700,896 output_type transcription factor binding sites all genome_build hg38 cell_type GM06990 biosample_type Cell line biosample_term_id EFO:0002783 tissue_category Blood encode_experiment_id ENCSR000DQW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 832,415 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_CCASCAGRGGGCGC_sorted.bed.gz processed_file_md5 ec69054cabaf298315d2c7e17f74aa95 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_CCASCAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_CCASCAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF031WEA_CCASCAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF031WEA_CCASCAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d1966dd7cb09631c9d0149495cdf7771 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM06990;Original_cell_type=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF031WEA;ENCODE_bigBed_id=ENCFF471OQT;PMID=34755879;Motif_sequence=CCASCAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002783;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM06990 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQW] [TFBS]
CTCF • Astrocyte NGFTBCI73WIKTM • Factorbook34755879 Motif finding Astrocyte TFBS Show metadata Download track Track metadata identifier NGFTBCI73WIKTM data_source Factorbook Download track Download number_of_intervals 42,997 bp_covered 644,955 output_type transcription factor binding sites all genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Nervous encode_experiment_id ENCSR000DSU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 726,705 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF901WRI_CASCAGRKGGCRSYV_sorted.bed.gz processed_file_md5 50a3698778b31067824dfd00068da515 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF901WRI_CASCAGRKGGCRSYV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF901WRI_CASCAGRKGGCRSYV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF901WRI_CASCAGRKGGCRSYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF901WRI_CASCAGRKGGCRSYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2eb68f2bf8ff12dd517e8a56e3c21493 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens astrocyte of the spinal cord;Original_cell_type=astrocyte of the spinal cord;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF901WRI;ENCODE_bigBed_id=ENCFF213GKL;PMID=34755879;Motif_sequence=CASCAGRKGGCRSYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002606;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name Factorbook Astrocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DSU] [TFBS]
CTCF • Fibroblast NGFTBCLAYDLZQ4 • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBCLAYDLZQ4 data_source Factorbook Download track Download number_of_intervals 2,830 bp_covered 56,600 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000ANO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 56,004 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_DAACAWKHWRTGCYTMASAG_sorted.bed.gz processed_file_md5 70a2465bddb68e30c972be38d3e340a1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_DAACAWKHWRTGCYTMASAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693QOO_DAACAWKHWRTGCYTMASAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693QOO_DAACAWKHWRTGCYTMASAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693QOO_DAACAWKHWRTGCYTMASAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 97847597298d3680e9a76c3feeaf8ba4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years);Original_cell_type=fibroblast of lung;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF693QOO;ENCODE_bigBed_id=ENCFF356FDN;PMID=34755879;Motif_sequence=DAACAWKHWRTGCYTMASAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANO] [TFBS]
CTCF • Fibroblast NGFTBCLKL7432X • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBCLKL7432X data_source Factorbook Download track Download number_of_intervals 10,063 bp_covered 201,260 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Blood Vessel encode_experiment_id ENCSR000DPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 197,668 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_NGSCTGCAGTKCCMCHNNTK_sorted.bed.gz processed_file_md5 44260c500fd7387f6eb9975d5f8c777f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_NGSCTGCAGTKCCMCHNNTK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_NGSCTGCAGTKCCMCHNNTK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF552LAX_NGSCTGCAGTKCCMCHNNTK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF552LAX_NGSCTGCAGTKCCMCHNNTK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 79d64e15f759f5ea8073b17ed28553d3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of the aortic adventitia female;Original_cell_type=fibroblast of the aortic adventitia;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF552LAX;ENCODE_bigBed_id=ENCFF639DMR;PMID=34755879;Motif_sequence=NGSCTGCAGTKCCMCHNNTK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002547;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPY] [TFBS]
CTCF • Muscularis mucosa NGFTBCNDOVQ25E • Factorbook34755879 Motif finding Muscularis mucosa TFBS Show metadata Download track Track metadata identifier NGFTBCNDOVQ25E data_source Factorbook Download track Download number_of_intervals 39,588 bp_covered 593,820 output_type transcription factor binding sites all genome_build hg38 cell_type Muscularis mucosa biosample_type Tissue biosample_term_id UBERON:0006676 tissue_category Digestive encode_experiment_id ENCSR559KAB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 649,775 downloaded_date 07/10/2024 release_date 12/19/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_GCGCCCCCTGGYGGC_sorted.bed.gz processed_file_md5 07fba2195dc950299fef2da38e6a3ff3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_GCGCCCCCTGGYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_GCGCCCCCTGGYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF938CMJ_GCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF938CMJ_GCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 35dd62d04f68e542653e941656fac7a6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus muscularis mucosa tissue male adult (37 years);Original_cell_type=esophagus muscularis mucosa;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF938CMJ;ENCODE_bigBed_id=ENCFF421MEH;PMID=34755879;Motif_sequence=GCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004648;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Muscularis mucosa (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR559KAB] [Life stage: Adult] [TFBS]
CTCF • GM12874 NGFTBCR6S5T4N3 • Factorbook34755879 Motif finding GM12874 TFBS Show metadata Download track Track metadata identifier NGFTBCR6S5T4N3 data_source Factorbook Download track Download number_of_intervals 43 bp_covered 903 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12874 biosample_type Cell line biosample_term_id EFO:0001161 tissue_category Blood encode_experiment_id ENCSR000DRR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,092 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA_filtered.bed.gz processed_file_md5 3e015c4e3d4fadb2369a376325a6c173 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 59e9ee265882b04feda65cfacbb2efa6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12874;Original_cell_type=GM12874;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF910AWG;ENCODE_bigBed_id=ENCFF942MTD;PMID=34755879;Motif_sequence=WHTSACCRHYAGRKGGCAGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001161;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12874 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRR] [TFBS]
CTCF • Peyers patch NGFTBCWLDTDFLX • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBCWLDTDFLX data_source Factorbook Download track Download number_of_intervals 7,394 bp_covered 207,032 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR375VXU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 173,703 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA_sorted.bed.gz processed_file_md5 992eb28fd728eada66ba1bae82ed9108 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bafa00affefe4717c6dc5f8d3a9128cb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue female adult (53 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF013GUN;ENCODE_bigBed_id=ENCFF746TCR;PMID=34755879;Motif_sequence=TGYTKYCHCCTRGTGGHBARWDYTKDAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR375VXU] [Life stage: Adult] [TFBS]
CTCF • GM12875 NGFTBCWN5WV7P2 • Factorbook34755879 Motif finding GM12875 TFBS Show metadata Download track Track metadata identifier NGFTBCWN5WV7P2 data_source Factorbook Download track Download number_of_intervals 131 bp_covered 3,799 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12875 biosample_type Cell line biosample_term_id EFO:0001162 tissue_category Blood encode_experiment_id ENCSR000DRU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,989 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY_filtered.bed.gz processed_file_md5 1cc9200d90c8b877865bdd48148cc4b3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF456NUW_CYGSDGKKCYYSAGCKCCCCCTGSTGGYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 28f2ba45964e16d8931fa8edfb90c1b9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12875;Original_cell_type=GM12875;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF456NUW;ENCODE_bigBed_id=ENCFF081UCQ;PMID=34755879;Motif_sequence=CYGSDGKKCYYSAGCKCCCCCTGSTGGYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001162;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12875 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRU] [TFBS]
CTCF • AG09309 NGFTBCWNP6TEWH • Factorbook34755879 Motif finding AG09309 TFBS Show metadata Download track Track metadata identifier NGFTBCWNP6TEWH data_source Factorbook Download track Download number_of_intervals 10,857 bp_covered 119,427 output_type transcription factor binding sites all genome_build hg38 cell_type AG09309 biosample_type Cell line biosample_term_id CLO:0021752 tissue_category Skin encode_experiment_id ENCSR000DPP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 148,237 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_AGCAGAGAGCY_sorted.bed.gz processed_file_md5 97f3b3b9e409f10a7e57efd524c70b32 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_AGCAGAGAGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_AGCAGAGAGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693KJZ_AGCAGAGAGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693KJZ_AGCAGAGAGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 65cb18479bd356ada4012ef2a6200224 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG09309;Original_cell_type=AG09309;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF693KJZ;ENCODE_bigBed_id=ENCFF478XPS;PMID=34755879;Motif_sequence=AGCAGAGAGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021752;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG09309 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPP] [Life stage: Adult] [TFBS]
CTCF • Testis NGFTBCWQXF5RW5 • Factorbook34755879 Motif finding Testis TFBS Show metadata Download track Track metadata identifier NGFTBCWQXF5RW5 data_source Factorbook Download track Download number_of_intervals 34,951 bp_covered 524,265 output_type transcription factor binding sites all genome_build hg38 cell_type Testis biosample_type Tissue biosample_term_id UBERON:0000473 tissue_category Male Reproductive encode_experiment_id ENCSR981CID biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 606,148 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871GVU_GCGCCCCCTGGYGGC_sorted.bed.gz processed_file_md5 b83cc00950bab5d712aa7e66cbbd2415 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871GVU_GCGCCCCCTGGYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871GVU_GCGCCCCCTGGYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871GVU_GCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871GVU_GCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eda1ac593c75b6b2c95f1b9d1943b59a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens testis tissue male adult (54 years);Original_cell_type=testis;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF871GVU;ENCODE_bigBed_id=ENCFF409BGH;PMID=34755879;Motif_sequence=GCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000473;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Testis (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR981CID] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTBCYYGOLBFC • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBCYYGOLBFC data_source Factorbook Download track Download number_of_intervals 155 bp_covered 4,495 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DLS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,546 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF240MUS_ARAGGCCAGGGATGCTGCTAAACWTCCYA_filtered.bed.gz processed_file_md5 c5b0933f6355b7138b42d86e2dab883a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF240MUS_ARAGGCCAGGGATGCTGCTAAACWTCCYA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF240MUS_ARAGGCCAGGGATGCTGCTAAACWTCCYA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF240MUS_ARAGGCCAGGGATGCTGCTAAACWTCCYA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF240MUS_ARAGGCCAGGGATGCTGCTAAACWTCCYA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dc634a205a668b7f1a374a10c711fb38 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Vishwanath Iyer, UTA;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF240MUS;ENCODE_bigBed_id=ENCFF668CTD;PMID=34755879;Motif_sequence=ARAGGCCAGGGATGCTGCTAAACWTCCYA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLS] [Life stage: Child] [TFBS]