CTCF • Testis NGFTBD26GNKLA5 • Factorbook34755879 Motif finding Testis TFBS Show metadata Download track Track metadata identifier NGFTBD26GNKLA5 data_source Factorbook Download track Download number_of_intervals 496 bp_covered 7,440 output_type transcription factor binding sites significant genome_build hg38 cell_type Testis biosample_type Tissue biosample_term_id UBERON:0000473 tissue_category Male Reproductive encode_experiment_id ENCSR981CID biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,857 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871GVU_GCGCCCCCTGGYGGC_filtered.bed.gz processed_file_md5 a9497ba0ffd05532d224b07594d7d8da wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871GVU_GCGCCCCCTGGYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871GVU_GCGCCCCCTGGYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871GVU_GCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871GVU_GCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eda1ac593c75b6b2c95f1b9d1943b59a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens testis tissue male adult (54 years);Original_cell_type=testis;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF871GVU;ENCODE_bigBed_id=ENCFF409BGH;PMID=34755879;Motif_sequence=GCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000473;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Testis (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR981CID] [Life stage: Adult] [TFBS]
CTCF • SK-N-SH NGFTBD2GZZOEOV • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBD2GZZOEOV data_source Factorbook Download track Download number_of_intervals 51,550 bp_covered 773,250 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000EIC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 863,505 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_RSYGCCMYCTGSTGG_sorted.bed.gz processed_file_md5 a6d478cdb047ce8547a2683251620e31 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_RSYGCCMYCTGSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_RSYGCCMYCTGSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF608JKY_RSYGCCMYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF608JKY_RSYGCCMYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 83404c35e00bfff308a7eca9515f6cbf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Michael Snyder, Stanford;System=central nervous system;ENCODE_BED_id=ENCFF608JKY;ENCODE_bigBed_id=ENCFF731NJX;PMID=34755879;Motif_sequence=RSYGCCMYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EIC] [Life stage: Child] [TFBS]
CTCF • IMR-90 NGFTBD2L375RCN • Factorbook34755879 Motif finding IMR-90 TFBS Show metadata Download track Track metadata identifier NGFTBD2L375RCN data_source Factorbook Download track Download number_of_intervals 38,425 bp_covered 653,225 output_type transcription factor binding sites all genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR000EFI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 686,148 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF670ULH_GYGCCMYCTRGTGGCCR_sorted.bed.gz processed_file_md5 ee2b2b5a97d1b2f97dc8e540f72f945b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF670ULH_GYGCCMYCTRGTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF670ULH_GYGCCMYCTRGTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF670ULH_GYGCCMYCTRGTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF670ULH_GYGCCMYCTRGTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 74919f5fef160f4bb74ccd99066632e3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens IMR-90;Original_cell_type=IMR-90;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF670ULH;ENCODE_bigBed_id=ENCFF804WIR;PMID=34755879;Motif_sequence=GYGCCMYCTRGTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name Factorbook IMR-90 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EFI] [Life stage: Embryonic] [TFBS]
CTCF • HCT116 NGFTBD47T3YGQI • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBD47T3YGQI data_source Factorbook Download track Download number_of_intervals 55,935 bp_covered 950,895 output_type transcription factor binding sites all genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR000DTO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,029,452 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF832INR_YGGCCASYAGRGGGCRC_sorted.bed.gz processed_file_md5 75f679bca36f762b27d00d6f160222aa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF832INR_YGGCCASYAGRGGGCRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF832INR_YGGCCASYAGRGGGCRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF832INR_YGGCCASYAGRGGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF832INR_YGGCCASYAGRGGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ef141cca0ccc4c7970db55aa461c0e8f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=John Stamatoyannopoulos, UW;System=digestive system;ENCODE_BED_id=ENCFF832INR;ENCODE_bigBed_id=ENCFF209YMI;PMID=34755879;Motif_sequence=YGGCCASYAGRGGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTO] [Life stage: Adult] [TFBS]
CTCF • PC-9 NGFTBD5NVJXKUH • Factorbook34755879 Motif finding PC-9 TFBS Show metadata Download track Track metadata identifier NGFTBD5NVJXKUH data_source Factorbook Download track Download number_of_intervals 65,397 bp_covered 980,955 output_type transcription factor binding sites all genome_build hg38 cell_type PC-9 biosample_type Cell line biosample_term_id EFO:0002847 tissue_category Lung encode_experiment_id ENCSR243INX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 890,241 downloaded_date 07/10/2024 release_date 01/12/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734SEO_SYGCCMYCTRGTGGY_sorted.bed.gz processed_file_md5 cb8dc4685ddaada7b1df6d764f531df1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734SEO_SYGCCMYCTRGTGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734SEO_SYGCCMYCTRGTGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF734SEO_SYGCCMYCTRGTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF734SEO_SYGCCMYCTRGTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1220230a4570fcaeee9397b39d87ab40 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens PC-9;Original_cell_type=PC-9;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF734SEO;ENCODE_bigBed_id=ENCFF523OGY;PMID=34755879;Motif_sequence=SYGCCMYCTRGTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002847;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook PC-9 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR243INX] [TFBS]
CTCF • HFF-Myc NGFTBDCOTF5ZN4 • Factorbook34755879 Motif finding HFF-Myc TFBS Show metadata Download track Track metadata identifier NGFTBDCOTF5ZN4 data_source Factorbook Download track Download number_of_intervals 957 bp_covered 20,097 output_type transcription factor binding sites significant genome_build hg38 cell_type HFF-Myc biosample_type Cell line biosample_term_id EFO:0005710 tissue_category Skin encode_experiment_id ENCSR000DUM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 16,950 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB_filtered.bed.gz processed_file_md5 9dc0fb35ac4d29429c52359e95e29e35 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF465OQP_NYGGCCASYAGRGGGCRSYVB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4629beb051b1a2aa4b18974fb2159363 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HFF-Myc originated from foreskin fibroblast;Original_cell_type=HFF-Myc;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF465OQP;ENCODE_bigBed_id=ENCFF680WYR;PMID=34755879;Motif_sequence=NYGGCCASYAGRGGGCRSYVB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005710;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook HFF-Myc (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUM] [TFBS]
CTCF • Aorta NGFTBDCQZY73ZY • Factorbook34755879 Motif finding Aorta TFBS Show metadata Download track Track metadata identifier NGFTBDCQZY73ZY data_source Factorbook Download track Download number_of_intervals 6,789 bp_covered 101,835 output_type transcription factor binding sites all genome_build hg38 cell_type Aorta biosample_type Tissue biosample_term_id UBERON:0000947 tissue_category Blood Vessel encode_experiment_id ENCSR668BTN biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 109,874 downloaded_date 07/10/2024 release_date 03/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF891COF_TGCAGTTCCHSHKHY_sorted.bed.gz processed_file_md5 8b0cc3251e48a7cada24de41d605f93e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF891COF_TGCAGTTCCHSHKHY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF891COF_TGCAGTTCCHSHKHY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF891COF_TGCAGTTCCHSHKHY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF891COF_TGCAGTTCCHSHKHY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 17ea7c46be501081f47a90e8740e32f5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thoracic aorta tissue male adult (37 years);Original_cell_type=thoracic aorta;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF891COF;ENCODE_bigBed_id=ENCFF012WJQ;PMID=34755879;Motif_sequence=TGCAGTTCCHSHKHY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001515;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Aorta (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR668BTN] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTBDDOJZQCKW • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBDDOJZQCKW data_source Factorbook Download track Download number_of_intervals 23,545 bp_covered 470,900 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Blood Vessel encode_experiment_id ENCSR000DPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 453,646 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_CYCAGCDGCCWCYRGRGGGC_sorted.bed.gz processed_file_md5 ac4f6c6d0580b667ff69df462a42c50f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_CYCAGCDGCCWCYRGRGGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_CYCAGCDGCCWCYRGRGGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF552LAX_CYCAGCDGCCWCYRGRGGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF552LAX_CYCAGCDGCCWCYRGRGGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0f6eea4d8215f1cd45a8da6d5d47ba6d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of the aortic adventitia female;Original_cell_type=fibroblast of the aortic adventitia;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF552LAX;ENCODE_bigBed_id=ENCFF639DMR;PMID=34755879;Motif_sequence=CYCAGCDGCCWCYRGRGGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002547;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPY] [TFBS]
CTCF • Keratinocyte NGFTBDE7OCYN33 • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBDE7OCYN33 data_source Factorbook Download track Download number_of_intervals 22,504 bp_covered 337,560 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000ALJ biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 390,183 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758PQD_YGGCCASYAGRKGGC_sorted.bed.gz processed_file_md5 e27be07d65642100dea0f39b92addfce wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758PQD_YGGCCASYAGRKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758PQD_YGGCCASYAGRKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758PQD_YGGCCASYAGRKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758PQD_YGGCCASYAGRKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5e0a9a3fbc56e0ac48c8a1788787fcf6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens keratinocyte female;Original_cell_type=keratinocyte;Lab=Bradley Bernstein, Broad;System=integumental system;ENCODE_BED_id=ENCFF758PQD;ENCODE_bigBed_id=ENCFF925ERV;PMID=34755879;Motif_sequence=YGGCCASYAGRKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Keratinocyte (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ALJ] [TFBS]
CTCF • HepG2 NGFTBDEIPQBADX • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBDEIPQBADX data_source Factorbook Download track Download number_of_intervals 6 bp_covered 180 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BIE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 522 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW_filtered.bed.gz processed_file_md5 ef9bdc23bcf53613462eddb089d640b1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 524ad0b2f503115101cb0ea67d918000 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF199YFA;ENCODE_bigBed_id=ENCFF348BUL;PMID=34755879;Motif_sequence=TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIE] [Life stage: Child] [TFBS]
CTCF • T47D NGFTBDETGZVJ7F • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTBDETGZVJ7F data_source Factorbook Download track Download number_of_intervals 4 bp_covered 112 output_type transcription factor binding sites significant genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BNO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 448 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA_filtered.bed.gz processed_file_md5 f1cea650ddfadcb1d90f5a854a2b2ee6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 48cf4b92461943f9bb486e5388fd7b49 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF524DPR;ENCODE_bigBed_id=ENCFF063ZXA;PMID=34755879;Motif_sequence=TACTGCAGYCTCKCTGGTGSTGTAGTAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNO] [Life stage: Adult] [TFBS]
CTCF • Atrium auricular region NGFTBDFVCJ2HGT • Factorbook34755879 Motif finding Atrium auricular region TFBS Show metadata Download track Track metadata identifier NGFTBDFVCJ2HGT data_source Factorbook Download track Download number_of_intervals 427 bp_covered 6,405 output_type transcription factor binding sites significant genome_build hg38 cell_type Atrium auricular region biosample_type Tissue biosample_term_id UBERON:0006618 tissue_category Heart encode_experiment_id ENCSR066GBX biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,079 downloaded_date 07/10/2024 release_date 02/10/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF779BFW_RCCACCAGGKGGCRS_filtered.bed.gz processed_file_md5 2ff43b042fc1f463e9afbb8ce6129db0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF779BFW_RCCACCAGGKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF779BFW_RCCACCAGGKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF779BFW_RCCACCAGGKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF779BFW_RCCACCAGGKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a997991dc0349f40ed6492f29226a59b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens right atrium auricular region tissue female adult (53 years);Original_cell_type=right atrium auricular region;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF779BFW;ENCODE_bigBed_id=ENCFF690LBT;PMID=34755879;Motif_sequence=RCCACCAGGKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006631;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Atrium auricular region (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR066GBX] [Life stage: Adult] [TFBS]
CTCF • Transverse colon NGFTBDHHA2PSUQ • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTBDHHA2PSUQ data_source Factorbook Download track Download number_of_intervals 11,810 bp_covered 177,150 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR558HTE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 204,459 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_SYGCCMYCTGGTGGC_sorted.bed.gz processed_file_md5 758bef611f21beb81b308fb813e14368 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_SYGCCMYCTGGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF613UQP_SYGCCMYCTGGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF613UQP_SYGCCMYCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF613UQP_SYGCCMYCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c9b96dfc1ae9f00b7496f9109e6c4a1b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue female adult (51 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF613UQP;ENCODE_bigBed_id=ENCFF558VAH;PMID=34755879;Motif_sequence=SYGCCMYCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR558HTE] [Life stage: Adult] [TFBS]
CTCF • Stomach NGFTBDHT5TW633 • Factorbook34755879 Motif finding Stomach TFBS Show metadata Download track Track metadata identifier NGFTBDHT5TW633 data_source Factorbook Download track Download number_of_intervals 5,397 bp_covered 107,940 output_type transcription factor binding sites all genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id ENCSR549WAU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 106,377 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515HTQ_HRHDKBNGGAACTGCAGCHG_sorted.bed.gz processed_file_md5 5ff0c910aaab3c32c18177144d523777 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515HTQ_HRHDKBNGGAACTGCAGCHG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515HTQ_HRHDKBNGGAACTGCAGCHG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF515HTQ_HRHDKBNGGAACTGCAGCHG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF515HTQ_HRHDKBNGGAACTGCAGCHG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3aa4229ca3cef6fd43244b899662cf3d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens stomach tissue male adult (54 years);Original_cell_type=stomach;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF515HTQ;ENCODE_bigBed_id=ENCFF593FMT;PMID=34755879;Motif_sequence=HRHDKBNGGAACTGCAGCHG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000945;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Stomach (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR549WAU] [Life stage: Adult] [TFBS]
CTCF • AG10803 NGFTBDIT26DMID • Factorbook34755879 Motif finding AG10803 TFBS Show metadata Download track Track metadata identifier NGFTBDIT26DMID data_source Factorbook Download track Download number_of_intervals 56 bp_covered 840 output_type transcription factor binding sites significant genome_build hg38 cell_type AG10803 biosample_type Cell line biosample_term_id CLO:0021511 tissue_category Skin encode_experiment_id ENCSR000DPV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 904 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF912KWD_RSYGCCMYCTRSTGG_filtered.bed.gz processed_file_md5 741d3157eb8d93aaeb03ac4da4a738f5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF912KWD_RSYGCCMYCTRSTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF912KWD_RSYGCCMYCTRSTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF912KWD_RSYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF912KWD_RSYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3f0e39cc4f919119cd891879d8bd45c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG10803;Original_cell_type=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF912KWD;ENCODE_bigBed_id=ENCFF550SXU;PMID=34755879;Motif_sequence=RSYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021511;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG10803 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPV] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTBDK2WZDDRU • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBDK2WZDDRU data_source Factorbook Download track Download number_of_intervals 603 bp_covered 10,854 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BIE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,054 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF199YFA_VBRSYGCCMYCTGSTGGC_filtered.bed.gz processed_file_md5 2d7d82deb06fdcef2805431f56dbf3bf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF199YFA_VBRSYGCCMYCTGSTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF199YFA_VBRSYGCCMYCTGSTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF199YFA_VBRSYGCCMYCTGSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF199YFA_VBRSYGCCMYCTGSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4f77340cf94cc12313e6fa944490ae01 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF199YFA;ENCODE_bigBed_id=ENCFF348BUL;PMID=34755879;Motif_sequence=VBRSYGCCMYCTGSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIE] [Life stage: Child] [TFBS]
CTCF • HeLa-S3 NGFTBDKCME63IP • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBDKCME63IP data_source Factorbook Download track Download number_of_intervals 9,883 bp_covered 108,713 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DUB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 137,756 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF030QAM_BGGRRCTGCAG_sorted.bed.gz processed_file_md5 715d440b259f342cfc9f5cd170f1e5bc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF030QAM_BGGRRCTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF030QAM_BGGRRCTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF030QAM_BGGRRCTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF030QAM_BGGRRCTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8997e1ee50d9bad8c1e2d20f4ddda5e3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3 G1b phase;Original_cell_type=HeLa-S3;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF030QAM;ENCODE_bigBed_id=ENCFF626XQK;PMID=34755879;Motif_sequence=BGGRRCTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUB] [Life stage: Adult] [TFBS]
CTCF • Thyroid gland NGFTBDMLYC4EEQ • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBDMLYC4EEQ data_source Factorbook Download track Download number_of_intervals 1,200 bp_covered 33,600 output_type transcription factor binding sites significant genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR744YJR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,793 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD_filtered.bed.gz processed_file_md5 22b1e8382581a19a1f4f54f26c8e0934 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 65782fecee53a7f64aed30e31de48128 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue female adult (53 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF498GQK;ENCODE_bigBed_id=ENCFF748ICQ;PMID=34755879;Motif_sequence=RGCGCCCYCTDSTGGCCRNNVNGGGVAD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR744YJR] [Life stage: Adult] [TFBS]
CTCF • Sigmoid colon NGFTBDOSGL5QWX • Factorbook34755879 Motif finding Sigmoid colon TFBS Show metadata Download track Track metadata identifier NGFTBDOSGL5QWX data_source Factorbook Download track Download number_of_intervals 53 bp_covered 795 output_type transcription factor binding sites significant genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id ENCSR222SQE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 913 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF829XMK_GCCACCAGRKGGCRS_filtered.bed.gz processed_file_md5 26e06ca5efa66b7e5ed7af2721bb00d4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF829XMK_GCCACCAGRKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF829XMK_GCCACCAGRKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF829XMK_GCCACCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF829XMK_GCCACCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 450109be848afb11a29b3e78e3c9a1ae data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens sigmoid colon tissue male adult (54 years);Original_cell_type=sigmoid colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF829XMK;ENCODE_bigBed_id=ENCFF086DZH;PMID=34755879;Motif_sequence=GCCACCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Sigmoid colon (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR222SQE] [Life stage: Adult] [TFBS]
CTCF • WI38 NGFTBDQ5QJNBLW • Factorbook34755879 Motif finding WI38 TFBS Show metadata Download track Track metadata identifier NGFTBDQ5QJNBLW data_source Factorbook Download track Download number_of_intervals 161 bp_covered 2,576 output_type transcription factor binding sites significant genome_build hg38 cell_type WI38 biosample_type Cell line biosample_term_id EFO:0001260 tissue_category Lung encode_experiment_id ENCSR000DYB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,185 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF127VTB_RSYGCCMYCTRGTGGC_filtered.bed.gz processed_file_md5 72a3ed21fa6550b15db06ffeb2a2e994 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF127VTB_RSYGCCMYCTRGTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF127VTB_RSYGCCMYCTRGTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF127VTB_RSYGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF127VTB_RSYGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2572a56a4c5d95f2931895ed7b34be22 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens WI38;Original_cell_type=WI38;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF127VTB;ENCODE_bigBed_id=ENCFF841AXJ;PMID=34755879;Motif_sequence=RSYGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001260;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook WI38 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYB] [TFBS]