CTCF • SK-N-SH NGFTBDQFZULTNH • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBDQFZULTNH data_source Factorbook Download track Download number_of_intervals 37,385 bp_covered 560,775 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000DXQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 653,087 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF727JSC_GCCCYCTRGTGGCCA_sorted.bed.gz processed_file_md5 b89a525a712ca31719427ad848e7d322 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF727JSC_GCCCYCTRGTGGCCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF727JSC_GCCCYCTRGTGGCCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF727JSC_GCCCYCTRGTGGCCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF727JSC_GCCCYCTRGTGGCCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 78aa360ba7926f149d0412c7022b59d1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Original_cell_type=SK-N-SH;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF727JSC;ENCODE_bigBed_id=ENCFF812MNO;PMID=34755879;Motif_sequence=GCCCYCTRGTGGCCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXQ] [Life stage: Child] [TFBS]
CTCF • Epithelial cell NGFTBDQXNPZGAI • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBDQXNPZGAI data_source Factorbook Download track Download number_of_intervals 35 bp_covered 700 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id ENCSR000DXD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 905 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF996IMS_CACYAGRKGGCRSYVBNGVV_filtered.bed.gz processed_file_md5 1c81a00dc06069a85eb612f1eb2f2d9c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF996IMS_CACYAGRKGGCRSYVBNGVV_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF996IMS_CACYAGRKGGCRSYVBNGVV_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF996IMS_CACYAGRKGGCRSYVBNGVV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF996IMS_CACYAGRKGGCRSYVBNGVV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b75d78d72d9219426a934d8fb5ea935e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens epithelial cell of proximal tubule;Original_cell_type=epithelial cell of proximal tubule;Lab=John Stamatoyannopoulos, UW;System=excretory system;ENCODE_BED_id=ENCFF996IMS;ENCODE_bigBed_id=ENCFF708UDD;PMID=34755879;Motif_sequence=CACYAGRKGGCRSYVBNGVV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002306;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXD] [TFBS]
CTCF • HFF-Myc NGFTBDREWHQ5KB • Factorbook34755879 Motif finding HFF-Myc TFBS Show metadata Download track Track metadata identifier NGFTBDREWHQ5KB data_source Factorbook Download track Download number_of_intervals 38 bp_covered 798 output_type transcription factor binding sites significant genome_build hg38 cell_type HFF-Myc biosample_type Cell line biosample_term_id EFO:0005710 tissue_category Skin encode_experiment_id ENCSR000DUM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 994 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF465OQP_CHVAGCKGCCACYAGRGGGCD_filtered.bed.gz processed_file_md5 d53a920de517f1bb5e67a2766928581b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF465OQP_CHVAGCKGCCACYAGRGGGCD_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF465OQP_CHVAGCKGCCACYAGRGGGCD_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF465OQP_CHVAGCKGCCACYAGRGGGCD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF465OQP_CHVAGCKGCCACYAGRGGGCD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a6244fd0018c00bee5141978780289ce data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HFF-Myc originated from foreskin fibroblast;Original_cell_type=HFF-Myc;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF465OQP;ENCODE_bigBed_id=ENCFF680WYR;PMID=34755879;Motif_sequence=CHVAGCKGCCACYAGRGGGCD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005710;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook HFF-Myc (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUM] [TFBS]
CTCF • Peyers patch NGFTBDRYL2WPHZ • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBDRYL2WPHZ data_source Factorbook Download track Download number_of_intervals 7,878 bp_covered 165,438 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR799WDT biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 158,910 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_CMAADKNNGGWACTGCAGCMN_sorted.bed.gz processed_file_md5 d6f9ff72d9d3f0a7e9d60f7e8f9712f1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_CMAADKNNGGWACTGCAGCMN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_CMAADKNNGGWACTGCAGCMN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF320DPI_CMAADKNNGGWACTGCAGCMN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF320DPI_CMAADKNNGGWACTGCAGCMN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 15100ab17c204b047b04040c05a2f21b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (54 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF320DPI;ENCODE_bigBed_id=ENCFF828IDE;PMID=34755879;Motif_sequence=CMAADKNNGGWACTGCAGCMN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR799WDT] [Life stage: Adult] [TFBS]
CTCF • SK-N-SH NGFTBDSPYESB6P • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBDSPYESB6P data_source Factorbook Download track Download number_of_intervals 46,290 bp_covered 694,350 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR541AMF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 714,991 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF244QKO_YKGCCASYAGRGGGC_sorted.bed.gz processed_file_md5 df525e59a52c43ad90cc1ec74e479716 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF244QKO_YKGCCASYAGRGGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF244QKO_YKGCCASYAGRGGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF244QKO_YKGCCASYAGRGGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF244QKO_YKGCCASYAGRGGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 daf5afae3f1479df168b169daa50c228 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF244QKO;ENCODE_bigBed_id=ENCFF575DMG;PMID=34755879;Motif_sequence=YKGCCASYAGRGGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR541AMF] [Life stage: Child] [TFBS]
CTCF • Prostate gland NGFTBDV2IYXYJH • Factorbook34755879 Motif finding Prostate gland TFBS Show metadata Download track Track metadata identifier NGFTBDV2IYXYJH data_source Factorbook Download track Download number_of_intervals 8,132 bp_covered 97,584 output_type transcription factor binding sites all genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR829HTO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 123,537 downloaded_date 07/10/2024 release_date 11/29/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_GGAACTGCAGCC_sorted.bed.gz processed_file_md5 b441183a5d240e3fc825ee6f9d2bc1ae wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_GGAACTGCAGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_GGAACTGCAGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF771ZYH_GGAACTGCAGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF771ZYH_GGAACTGCAGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 04b144eacd218c335484f588022b8602 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Original_cell_type=prostate gland;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF771ZYH;ENCODE_bigBed_id=ENCFF655GBO;PMID=34755879;Motif_sequence=GGAACTGCAGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Prostate gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR829HTO] [Life stage: Adult] [TFBS]
CTCF • Cardiac muscle cell NGFTBDVBYM4SDD • Factorbook34755879 Motif finding Cardiac muscle cell TFBS Show metadata Download track Track metadata identifier NGFTBDVBYM4SDD data_source Factorbook Download track Download number_of_intervals 184 bp_covered 2,760 output_type transcription factor binding sites significant genome_build hg38 cell_type Cardiac muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id ENCSR713SXF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,181 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF130TVA_GCGCCCCCTGGYGGC_filtered.bed.gz processed_file_md5 ef0d7959649fa1d4e0f3020dbc380387 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF130TVA_GCGCCCCCTGGYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF130TVA_GCGCCCCCTGGYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF130TVA_GCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF130TVA_GCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 336ba017a248f977885fa544e157c36a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac muscle cell originated from RUES2;Original_cell_type=cardiac muscle cell;Lab=Bradley Bernstein, Broad;System=musculature,circulatory system;ENCODE_BED_id=ENCFF130TVA;ENCODE_bigBed_id=ENCFF777TNC;PMID=34755879;Motif_sequence=GCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000746;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Cardiac muscle cell (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR713SXF] [TFBS]
CTCF • K562 NGFTBDWPLM4Q2O • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBDWPLM4Q2O data_source Factorbook Download track Download number_of_intervals 64 bp_covered 960 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EGM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,019 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF660GHM_RCCASYAGRGGGCGC_filtered.bed.gz processed_file_md5 118423748ad92bd8b8362e7fd8225969 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF660GHM_RCCASYAGRGGGCGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF660GHM_RCCASYAGRGGGCGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF660GHM_RCCASYAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF660GHM_RCCASYAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ef52299310441475a794e4662fec9f8b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF660GHM;ENCODE_bigBed_id=ENCFF400DFR;PMID=34755879;Motif_sequence=RCCASYAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000EGM] [Life stage: Adult] [TFBS]
CTCF • GM10248 NGFTBDXDDC4I2D • Factorbook34755879 Motif finding GM10248 TFBS Show metadata Download track Track metadata identifier NGFTBDXDDC4I2D data_source Factorbook Download track Download number_of_intervals 1,833 bp_covered 36,660 output_type transcription factor binding sites significant genome_build hg38 cell_type GM10248 biosample_type Cell line biosample_term_id EFO:0005334 tissue_category Blood encode_experiment_id ENCSR000DKP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 31,948 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF180XBL_GGCCASCAGRKGGCGCYVBN_filtered.bed.gz processed_file_md5 b7a58ff93d71eabff4cafc401ddd1bad wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF180XBL_GGCCASCAGRKGGCGCYVBN_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF180XBL_GGCCASCAGRKGGCGCYVBN_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF180XBL_GGCCASCAGRKGGCGCYVBN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF180XBL_GGCCASCAGRKGGCGCYVBN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 45c0090b6ef6654f85c7d0e13c9b78b0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM10248;Original_cell_type=GM10248;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF180XBL;ENCODE_bigBed_id=ENCFF083HVS;PMID=34755879;Motif_sequence=GGCCASCAGRKGGCGCYVBN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005334;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM10248 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKP] [Life stage: Adult] [TFBS]
CTCF • Gastroesophageal sphincter NGFTBE4F7BEA5T • Factorbook34755879 Motif finding Gastroesophageal sphincter TFBS Show metadata Download track Track metadata identifier NGFTBE4F7BEA5T data_source Factorbook Download track Download number_of_intervals 16 bp_covered 336 output_type transcription factor binding sites significant genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR661XNQ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 635 downloaded_date 07/10/2024 release_date 06/23/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF584CZG_GBGGSBCTVCAGCGCCCCCTG_filtered.bed.gz processed_file_md5 ae0ddd60069dbed220ede636f6e800f8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF584CZG_GBGGSBCTVCAGCGCCCCCTG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF584CZG_GBGGSBCTVCAGCGCCCCCTG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF584CZG_GBGGSBCTVCAGCGCCCCCTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF584CZG_GBGGSBCTVCAGCGCCCCCTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c8fc8537c258e4d27968da304ab39488 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue male adult (54 years);Original_cell_type=gastroesophageal sphincter;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF584CZG;ENCODE_bigBed_id=ENCFF582GAX;PMID=34755879;Motif_sequence=GBGGSBCTVCAGCGCCCCCTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Gastroesophageal sphincter (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR661XNQ] [Life stage: Adult] [TFBS]
CTCF • Left ventricle NGFTBE5UBQ7GMH • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTBE5UBQ7GMH data_source Factorbook Download track Download number_of_intervals 38,240 bp_covered 535,360 output_type transcription factor binding sites all genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR544APK biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 598,453 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_CCACYAGRKGGCRS_sorted.bed.gz processed_file_md5 32ce1f9c5cffbd023dc93900164bb6b9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_CCACYAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_CCACYAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165RCX_CCACYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165RCX_CCACYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7013c1a0284ffaeb995ae7323abbe464 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (53 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF165RCX;ENCODE_bigBed_id=ENCFF185CKY;PMID=34755879;Motif_sequence=CCACYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR544APK] [Life stage: Adult] [TFBS]
CTCF • GM12874 NGFTBE6KBC5ED3 • Factorbook34755879 Motif finding GM12874 TFBS Show metadata Download track Track metadata identifier NGFTBE6KBC5ED3 data_source Factorbook Download track Download number_of_intervals 8,722 bp_covered 95,942 output_type transcription factor binding sites all genome_build hg38 cell_type GM12874 biosample_type Cell line biosample_term_id EFO:0001161 tissue_category Blood encode_experiment_id ENCSR000DRR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 123,401 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF910AWG_GGAACTGCAGC_sorted.bed.gz processed_file_md5 04fb79191decf431c9b7c958392c3b44 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF910AWG_GGAACTGCAGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF910AWG_GGAACTGCAGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF910AWG_GGAACTGCAGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF910AWG_GGAACTGCAGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 60a2007b416668315038ef1000406688 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12874;Original_cell_type=GM12874;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF910AWG;ENCODE_bigBed_id=ENCFF942MTD;PMID=34755879;Motif_sequence=GGAACTGCAGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001161;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12874 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRR] [TFBS]
CTCF • Tibial nerve NGFTBE77NXAQ5C • Factorbook34755879 Motif finding Tibial nerve TFBS Show metadata Download track Track metadata identifier NGFTBE77NXAQ5C data_source Factorbook Download track Download number_of_intervals 262 bp_covered 3,930 output_type transcription factor binding sites significant genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR469POZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,597 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF831KJJ_GCGCCCCCTGGYGGC_filtered.bed.gz processed_file_md5 7b0e0681a32aed4507df6efa7a195bd2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF831KJJ_GCGCCCCCTGGYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF831KJJ_GCGCCCCCTGGYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF831KJJ_GCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF831KJJ_GCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a078327b0d012e1e898661d80b71369e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens tibial nerve tissue female adult (53 years);Original_cell_type=tibial nerve;Lab=Michael Snyder, Stanford;System=peripheral nervous system;ENCODE_BED_id=ENCFF831KJJ;ENCODE_bigBed_id=ENCFF477JAK;PMID=34755879;Motif_sequence=GCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Tibial nerve (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR469POZ] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTBE7E3ACRVO • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBE7E3ACRVO data_source Factorbook Download track Download number_of_intervals 63,287 bp_covered 949,305 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BIE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,097,554 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF199YFA_SYGCCCYCTRSTGGY_sorted.bed.gz processed_file_md5 3cbaf1f542f0eef807400432bff15433 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF199YFA_SYGCCCYCTRSTGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF199YFA_SYGCCCYCTRSTGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF199YFA_SYGCCCYCTRSTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF199YFA_SYGCCCYCTRSTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a67e4e8102e806dfd6f7f3ab409c08bc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF199YFA;ENCODE_bigBed_id=ENCFF348BUL;PMID=34755879;Motif_sequence=SYGCCCYCTRSTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIE] [Life stage: Child] [TFBS]
CTCF • Pancreas NGFTBE7PAJ5OST • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTBE7PAJ5OST data_source Factorbook Download track Download number_of_intervals 2,563 bp_covered 38,445 output_type transcription factor binding sites all genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR000DND biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 45,166 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF577WVN_AVMKGRGGAAYTGCA_sorted.bed.gz processed_file_md5 bed9522710d647f317f80d89a416599b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF577WVN_AVMKGRGGAAYTGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF577WVN_AVMKGRGGAAYTGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF577WVN_AVMKGRGGAAYTGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF577WVN_AVMKGRGGAAYTGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 753b9885677daee37f4db242a9dddc25 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens pancreas tissue male adult (54 years) and male adult (60 years);Original_cell_type=pancreas;Lab=Vishwanath Iyer, UTA;System=NR;ENCODE_BED_id=ENCFF577WVN;ENCODE_bigBed_id=ENCFF101CZV;PMID=34755879;Motif_sequence=AVMKGRGGAAYTGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001264;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DND] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTBEA45MCHSY • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBEA45MCHSY data_source Factorbook Download track Download number_of_intervals 97 bp_covered 1,455 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,345 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF138REW_YGCCCYCTRSTGGCY_filtered.bed.gz processed_file_md5 33f4b9707ac683fa8070cf0b80ba4c40 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF138REW_YGCCCYCTRSTGGCY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF138REW_YGCCCYCTRSTGGCY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF138REW_YGCCCYCTRSTGGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF138REW_YGCCCYCTRSTGGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3e145c60e641d2067720861dea4b358d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF138REW;ENCODE_bigBed_id=ENCFF929GSU;PMID=34755879;Motif_sequence=YGCCCYCTRSTGGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZN] [TFBS]
CTCF • MCF-7 NGFTBECWN6HGSG • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBECWN6HGSG data_source Factorbook Download track Download number_of_intervals 169 bp_covered 2,535 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,909 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF198YOJ_RSYGCCMYCTGSTGG_filtered.bed.gz processed_file_md5 4541f1318cee8a2847b60225dbc794e6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF198YOJ_RSYGCCMYCTGSTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF198YOJ_RSYGCCMYCTGSTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF198YOJ_RSYGCCMYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF198YOJ_RSYGCCMYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 31993c34b468c1ffa5c8d68f672bcf2f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF198YOJ;ENCODE_bigBed_id=ENCFF844STM;PMID=34755879;Motif_sequence=RSYGCCMYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMO] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBECZC5BOZK • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBECZC5BOZK data_source Factorbook Download track Download number_of_intervals 55,597 bp_covered 833,955 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000AHD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 967,259 downloaded_date 07/10/2024 release_date 09/10/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF596MGE_RSYGCCMYCTGSTGG_sorted.bed.gz processed_file_md5 b04c755943dfd3ec6fe6159e0054bc36 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF596MGE_RSYGCCMYCTGSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF596MGE_RSYGCCMYCTGSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF596MGE_RSYGCCMYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF596MGE_RSYGCCMYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 487118bd65a26e1e018dc6e0c777eea8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF596MGE;ENCODE_bigBed_id=ENCFF162GNE;PMID=34755879;Motif_sequence=RSYGCCMYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AHD] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTBEF2KZSEQ3 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBEF2KZSEQ3 data_source Factorbook Download track Download number_of_intervals 414 bp_covered 6,210 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DLS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,736 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF240MUS_GCCASCAGRGGGMGC_filtered.bed.gz processed_file_md5 53849e6769c2da4f845d25d894e002ca wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF240MUS_GCCASCAGRGGGMGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF240MUS_GCCASCAGRGGGMGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF240MUS_GCCASCAGRGGGMGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF240MUS_GCCASCAGRGGGMGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 926b886eee7c3165a38b132995e7c1d7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Vishwanath Iyer, UTA;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF240MUS;ENCODE_bigBed_id=ENCFF668CTD;PMID=34755879;Motif_sequence=GCCASCAGRGGGMGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLS] [Life stage: Child] [TFBS]
CTCF • Keratinocyte NGFTBEG26FEDP5 • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBEG26FEDP5 data_source Factorbook Download track Download number_of_intervals 44,582 bp_covered 579,566 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000DWX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 710,537 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_CCASCAGRGGGCG_sorted.bed.gz processed_file_md5 93cf840b75d3950357b252b8af2130e0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_CCASCAGRGGGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_CCASCAGRGGGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF149BJK_CCASCAGRGGGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF149BJK_CCASCAGRGGGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6fa0786dfed09b37e0ff79d2e2698e6b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens keratinocyte female;Original_cell_type=keratinocyte;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF149BJK;ENCODE_bigBed_id=ENCFF667ULX;PMID=34755879;Motif_sequence=CCASCAGRGGGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWX] [TFBS]