CTCF • AG04449 NGFTBHSB46YPAR • Factorbook34755879 Motif finding AG04449 TFBS Show metadata Download track Track metadata identifier NGFTBHSB46YPAR data_source Factorbook Download track Download number_of_intervals 25,748 bp_covered 386,220 output_type transcription factor binding sites all genome_build hg38 cell_type AG04449 biosample_type Cell line biosample_term_id CLO:0034837 tissue_category Skin encode_experiment_id ENCSR000DPG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 432,048 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF958ABF_GCCMYCTGSTGGNMR_sorted.bed.gz processed_file_md5 c6e1d5f0495e210b4d503b81447e3823 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF958ABF_GCCMYCTGSTGGNMR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF958ABF_GCCMYCTGSTGGNMR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF958ABF_GCCMYCTGSTGGNMR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF958ABF_GCCMYCTGSTGGNMR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 284d6751894a104426d87b69467f9457 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG04449;Original_cell_type=AG04449;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF958ABF;ENCODE_bigBed_id=ENCFF814JIR;PMID=34755879;Motif_sequence=GCCMYCTGSTGGNMR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0034837;is_hg38_lifted=no system_category Integumentary life_stage Embryonic track_name Factorbook AG04449 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPG] [Life stage: Embryonic] [TFBS]
CTCF • Smooth muscle cell NGFTBHT4MOMN36 • Factorbook34755879 Motif finding Smooth muscle cell TFBS Show metadata Download track Track metadata identifier NGFTBHT4MOMN36 data_source Factorbook Download track Download number_of_intervals 7,390 bp_covered 140,410 output_type transcription factor binding sites all genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Muscle encode_experiment_id ENCSR261VAS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 140,930 downloaded_date 07/10/2024 release_date 12/03/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF132BFT_VRNNDBNGGAACTGCAGCC_sorted.bed.gz processed_file_md5 b66f14807ac21fa175d3d80dbb974800 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF132BFT_VRNNDBNGGAACTGCAGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF132BFT_VRNNDBNGGAACTGCAGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF132BFT_VRNNDBNGGAACTGCAGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF132BFT_VRNNDBNGGAACTGCAGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2d405f0ad3815e8d631af551dc8e910c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Original_cell_type=smooth muscle cell;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF132BFT;ENCODE_bigBed_id=ENCFF656FBT;PMID=34755879;Motif_sequence=VRNNDBNGGAACTGCAGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000192;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name Factorbook Smooth muscle cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR261VAS] [Life stage: Embryonic] [TFBS]
CTCF • Fibroblast NGFTBI4FLQ3ZO3 • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBI4FLQ3ZO3 data_source Factorbook Download track Download number_of_intervals 9 bp_covered 270 output_type transcription factor binding sites significant genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Embryo encode_experiment_id ENCSR000DVQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 584 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY_filtered.bed.gz processed_file_md5 6aff80000a51c6310de3c78b0eb742b7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF209PDE_YCCTTTGCCWGCTGGYGMVATGYTAGGCTY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6c789950f39e5d2c311123537ea4ddd6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of villous mesenchyme;Original_cell_type=fibroblast of villous mesenchyme;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF209PDE;ENCODE_bigBed_id=ENCFF345VQO;PMID=34755879;Motif_sequence=YCCTTTGCCWGCTGGYGMVATGYTAGGCTY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002558;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVQ] [TFBS]
CTCF • A549 NGFTBI4SFNKQU5 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBI4SFNKQU5 data_source Factorbook Download track Download number_of_intervals 48,118 bp_covered 721,770 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR851SOK biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 748,728 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF839WLE_RGYGCCMCCTRSTGG_sorted.bed.gz processed_file_md5 39fe9958d015c60bc89db3d0b05d071f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF839WLE_RGYGCCMCCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF839WLE_RGYGCCMCCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF839WLE_RGYGCCMCCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF839WLE_RGYGCCMCCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4dda29bfe13a6397c47fe0b8fd3c8c07 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 3 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF839WLE;ENCODE_bigBed_id=ENCFF573HMK;PMID=34755879;Motif_sequence=RGYGCCMCCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR851SOK] [Life stage: Adult] [TFBS]
CTCF • Bipolar neuron NGFTBI5XENLYKU • Factorbook34755879 Motif finding Bipolar neuron TFBS Show metadata Download track Track metadata identifier NGFTBI5XENLYKU data_source Factorbook Download track Download number_of_intervals 46,367 bp_covered 556,404 output_type transcription factor binding sites all genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR619IUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 705,347 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF424MLS_GCCMYCTRSTGG_sorted.bed.gz processed_file_md5 24bfbd5552e587105b23f08740d49352 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF424MLS_GCCMYCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF424MLS_GCCMYCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF424MLS_GCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF424MLS_GCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9263ff27d2c7b717c7856047998d5a3c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Original_cell_type=bipolar neuron;Lab=Richard Myers, HAIB;System=central nervous system;ENCODE_BED_id=ENCFF424MLS;ENCODE_bigBed_id=ENCFF212OJX;PMID=34755879;Motif_sequence=GCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Bipolar neuron (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR619IUE] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTBIEDBSAK25 • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBIEDBSAK25 data_source Factorbook Download track Download number_of_intervals 5,588 bp_covered 100,584 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR692ILH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 101,287 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF585XAQ_RVNKBKGGAAYTGCAGSC_sorted.bed.gz processed_file_md5 b9fbb90cd641f4acca7cb40dc790b32b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF585XAQ_RVNKBKGGAAYTGCAGSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF585XAQ_RVNKBKGGAAYTGCAGSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF585XAQ_RVNKBKGGAAYTGCAGSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF585XAQ_RVNKBKGGAAYTGCAGSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1f05136a705b8b419421ef988550a5b6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue female adult (53 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF585XAQ;ENCODE_bigBed_id=ENCFF643KOU;PMID=34755879;Motif_sequence=RVNKBKGGAAYTGCAGSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR692ILH] [Life stage: Adult] [TFBS]
CTCF • Skin NGFTBIEI4Z2MQX • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTBIEI4Z2MQX data_source Factorbook Download track Download number_of_intervals 19,140 bp_covered 287,100 output_type transcription factor binding sites all genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR756KRS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 327,757 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF147HSY_GGCCRCYAGRKGGCG_sorted.bed.gz processed_file_md5 4771cd8b9b666948e9f5c201025918fe wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF147HSY_GGCCRCYAGRKGGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF147HSY_GGCCRCYAGRKGGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF147HSY_GGCCRCYAGRKGGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF147HSY_GGCCRCYAGRKGGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 59ea4725baa490a59d8a509a1d62f7ec data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens suprapubic skin tissue female adult (51 years);Original_cell_type=suprapubic skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF147HSY;ENCODE_bigBed_id=ENCFF198TWE;PMID=34755879;Motif_sequence=GGCCRCYAGRKGGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR756KRS] [Life stage: Adult] [TFBS]
CTCF • RWPE2 NGFTBIG6FAWEME • Factorbook34755879 Motif finding RWPE2 TFBS Show metadata Download track Track metadata identifier NGFTBIG6FAWEME data_source Factorbook Download track Download number_of_intervals 44,428 bp_covered 577,564 output_type transcription factor binding sites all genome_build hg38 cell_type RWPE2 biosample_type Cell line biosample_term_id EFO:0007610 tissue_category Male Reproductive encode_experiment_id ENCSR856JJB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 450,658 downloaded_date 07/10/2024 release_date 07/21/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541KUT_KGGARCTGCAGCY_sorted.bed.gz processed_file_md5 1991af98b9a4bf3954ae6dcd59b51551 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541KUT_KGGARCTGCAGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541KUT_KGGARCTGCAGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF541KUT_KGGARCTGCAGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF541KUT_KGGARCTGCAGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 976ed25e22ba6b7d25527119c617996e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens RWPE2;Original_cell_type=RWPE2;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF541KUT;ENCODE_bigBed_id=ENCFF604JNO;PMID=34755879;Motif_sequence=KGGARCTGCAGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007610;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook RWPE2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR856JJB] [Life stage: Adult] [TFBS]
CTCF • Bipolar neuron NGFTBIGAYUBK2H • Factorbook34755879 Motif finding Bipolar neuron TFBS Show metadata Download track Track metadata identifier NGFTBIGAYUBK2H data_source Factorbook Download track Download number_of_intervals 54,767 bp_covered 766,738 output_type transcription factor binding sites all genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR066BZZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 769,486 downloaded_date 07/10/2024 release_date 11/24/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_TGGCCACYAGRKGG_sorted.bed.gz processed_file_md5 19e3aece9d47768727be99d0adab8746 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_TGGCCACYAGRKGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF614PAB_TGGCCACYAGRKGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF614PAB_TGGCCACYAGRKGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF614PAB_TGGCCACYAGRKGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 462826f3316b38a820a56157ff834949 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Original_cell_type=bipolar neuron;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF614PAB;ENCODE_bigBed_id=ENCFF728HRR;PMID=34755879;Motif_sequence=TGGCCACYAGRKGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Bipolar neuron (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR066BZZ] [Life stage: Adult] [TFBS]
CTCF • GM23338 NGFTBIJDB7RTFH • Factorbook34755879 Motif finding GM23338 TFBS Show metadata Download track Track metadata identifier NGFTBIJDB7RTFH data_source Factorbook Download track Download number_of_intervals 69,684 bp_covered 1,045,260 output_type transcription factor binding sites all genome_build hg38 cell_type GM23338 biosample_type Induced pluripotent stem cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR987GXT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,131,642 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_GYGCCMYCTRGTGGY_sorted.bed.gz processed_file_md5 4341ce45d69e9c09aaa225bab3228882 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_GYGCCMYCTRGTGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_GYGCCMYCTRGTGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF991TMD_GYGCCMYCTRGTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF991TMD_GYGCCMYCTRGTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a68f320125a371f420e829771f2972ab data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Original_cell_type=GM23338;Lab=Bradley Bernstein, Broad;System=integumental system;ENCODE_BED_id=ENCFF991TMD;ENCODE_bigBed_id=ENCFF419AZG;PMID=34755879;Motif_sequence=GYGCCMYCTRGTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name Factorbook GM23338 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR987GXT] [Life stage: Adult] [TFBS]
CTCF • Adrenal gland NGFTBIKU3L7JFE • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBIKU3L7JFE data_source Factorbook Download track Download number_of_intervals 42,728 bp_covered 897,288 output_type transcription factor binding sites all genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR899JSO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 808,566 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG_sorted.bed.gz processed_file_md5 8e1d44570a9c33655c07e78c1a48c188 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c9871b0585b68974fe9a5b89a92d34ef data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue male adult (37 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF297BQF;ENCODE_bigBed_id=ENCFF596QXB;PMID=34755879;Motif_sequence=NRCCACYAGRKGGCRSYVBNG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR899JSO] [Life stage: Adult] [TFBS]
CTCF • Muscularis mucosa NGFTBILTCM2NK2 • Factorbook34755879 Motif finding Muscularis mucosa TFBS Show metadata Download track Track metadata identifier NGFTBILTCM2NK2 data_source Factorbook Download track Download number_of_intervals 4,446 bp_covered 66,690 output_type transcription factor binding sites all genome_build hg38 cell_type Muscularis mucosa biosample_type Tissue biosample_term_id UBERON:0006676 tissue_category Digestive encode_experiment_id ENCSR559KAB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 73,210 downloaded_date 07/10/2024 release_date 12/19/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_TGCAGTTCCBMBYYY_sorted.bed.gz processed_file_md5 3eaaf5957d2f13971608f253fca07d50 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_TGCAGTTCCBMBYYY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_TGCAGTTCCBMBYYY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF938CMJ_TGCAGTTCCBMBYYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF938CMJ_TGCAGTTCCBMBYYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 340fa650478babdc4a1eceef3aece139 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus muscularis mucosa tissue male adult (37 years);Original_cell_type=esophagus muscularis mucosa;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF938CMJ;ENCODE_bigBed_id=ENCFF421MEH;PMID=34755879;Motif_sequence=TGCAGTTCCBMBYYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004648;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Muscularis mucosa (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR559KAB] [Life stage: Adult] [TFBS]
CTCF • Left ventricle NGFTBINIYLEA7H • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTBINIYLEA7H data_source Factorbook Download track Download number_of_intervals 34,180 bp_covered 615,240 output_type transcription factor binding sites all genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR791AYW biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 625,651 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF274NOI_DBTGGCCASCAGGKGGCR_sorted.bed.gz processed_file_md5 3cf604ed7f8b550f68807e2ca4e41365 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF274NOI_DBTGGCCASCAGGKGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF274NOI_DBTGGCCASCAGGKGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF274NOI_DBTGGCCASCAGGKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF274NOI_DBTGGCCASCAGGKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 134fe42176a4ef429b3cd1e64e3f6497 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (51 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF274NOI;ENCODE_bigBed_id=ENCFF987PUT;PMID=34755879;Motif_sequence=DBTGGCCASCAGGKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR791AYW] [Life stage: Adult] [TFBS]
CTCF • Muscularis mucosa NGFTBINLJ6HHUG • Factorbook34755879 Motif finding Muscularis mucosa TFBS Show metadata Download track Track metadata identifier NGFTBINLJ6HHUG data_source Factorbook Download track Download number_of_intervals 37,889 bp_covered 568,335 output_type transcription factor binding sites all genome_build hg38 cell_type Muscularis mucosa biosample_type Tissue biosample_term_id UBERON:0006676 tissue_category Digestive encode_experiment_id ENCSR353DFU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 627,619 downloaded_date 07/10/2024 release_date 04/04/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144ERC_RSYGCCCYCTGSYGG_sorted.bed.gz processed_file_md5 91d4f242fd10c167de6b23c77cfead87 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144ERC_RSYGCCCYCTGSYGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144ERC_RSYGCCCYCTGSYGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF144ERC_RSYGCCCYCTGSYGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF144ERC_RSYGCCCYCTGSYGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cb47b84d1ee5bb315eb487317a77982d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus muscularis mucosa tissue female adult (51 years);Original_cell_type=esophagus muscularis mucosa;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF144ERC;ENCODE_bigBed_id=ENCFF544GAS;PMID=34755879;Motif_sequence=RSYGCCCYCTGSYGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004648;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Muscularis mucosa (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR353DFU] [Life stage: Adult] [TFBS]
CTCF • GM06990 NGFTBIPEIRVESN • Factorbook34755879 Motif finding GM06990 TFBS Show metadata Download track Track metadata identifier NGFTBIPEIRVESN data_source Factorbook Download track Download number_of_intervals 49 bp_covered 1,029 output_type transcription factor binding sites significant genome_build hg38 cell_type GM06990 biosample_type Cell line biosample_term_id EFO:0002783 tissue_category Blood encode_experiment_id ENCSR000DQW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 893 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG_filtered.bed.gz processed_file_md5 7f5c51f86d5e838b88e0e65498d8b84b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 28ab002ed38439fb1c144bb2e241e2f3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM06990;Original_cell_type=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF031WEA;ENCODE_bigBed_id=ENCFF471OQT;PMID=34755879;Motif_sequence=TGAGCGCCCCCTGGTGTCCTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002783;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM06990 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQW] [TFBS]
CTCF • Gastroesophageal sphincter NGFTBIQ4JECQ4H • Factorbook34755879 Motif finding Gastroesophageal sphincter TFBS Show metadata Download track Track metadata identifier NGFTBIQ4JECQ4H data_source Factorbook Download track Download number_of_intervals 32 bp_covered 896 output_type transcription factor binding sites significant genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR661XNQ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,086 downloaded_date 07/10/2024 release_date 06/23/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF584CZG_TGCTGCCMYCTDDTGGHSARWNCTRGRA_filtered.bed.gz processed_file_md5 f15ccd70e278afb389bf744c045b5df3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF584CZG_TGCTGCCMYCTDDTGGHSARWNCTRGRA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF584CZG_TGCTGCCMYCTDDTGGHSARWNCTRGRA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF584CZG_TGCTGCCMYCTDDTGGHSARWNCTRGRA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF584CZG_TGCTGCCMYCTDDTGGHSARWNCTRGRA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c13e278d9a3d1ef9931a20be844e7862 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue male adult (54 years);Original_cell_type=gastroesophageal sphincter;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF584CZG;ENCODE_bigBed_id=ENCFF582GAX;PMID=34755879;Motif_sequence=TGCTGCCMYCTDDTGGHSARWNCTRGRA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Gastroesophageal sphincter (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR661XNQ] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBIQ7ZQURGK • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBIQ7ZQURGK data_source Factorbook Download track Download number_of_intervals 358 bp_covered 5,370 output_type transcription factor binding sites significant genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000ALA biological_replicate 1 technical_replicate 1_1, 1_2, 1_3 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,194 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF949KVG_GCGCCCCCTGGYGGC_filtered.bed.gz processed_file_md5 549ce4ce70ea7c0694ca27129f948a0e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF949KVG_GCGCCCCCTGGYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF949KVG_GCGCCCCCTGGYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF949KVG_GCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF949KVG_GCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 304501b93aff9c285c0a981f5def4b31 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Bradley Bernstein, Broad;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF949KVG;ENCODE_bigBed_id=ENCFF947JAB;PMID=34755879;Motif_sequence=GCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ALA] [TFBS]
CTCF • Pancreas NGFTBIR52XD2MN • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTBIR52XD2MN data_source Factorbook Download track Download number_of_intervals 29,700 bp_covered 445,500 output_type transcription factor binding sites all genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR000DND biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 501,132 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF577WVN_CASCAGRKGGCRSYV_sorted.bed.gz processed_file_md5 ac0751c67bcf670f59af8806e1278e59 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF577WVN_CASCAGRKGGCRSYV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF577WVN_CASCAGRKGGCRSYV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF577WVN_CASCAGRKGGCRSYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF577WVN_CASCAGRKGGCRSYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b16c1a74a11e8581361c49eb9ed6863e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens pancreas tissue male adult (54 years) and male adult (60 years);Original_cell_type=pancreas;Lab=Vishwanath Iyer, UTA;System=NR;ENCODE_BED_id=ENCFF577WVN;ENCODE_bigBed_id=ENCFF101CZV;PMID=34755879;Motif_sequence=CASCAGRKGGCRSYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001264;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DND] [Life stage: Adult] [TFBS]
CTCF • Thyroid gland NGFTBIT2V2LHZQ • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBIT2V2LHZQ data_source Factorbook Download track Download number_of_intervals 41,376 bp_covered 620,640 output_type transcription factor binding sites all genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR492ZIW biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 627,378 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF035HJW_RCCACYAGRKGGCRS_sorted.bed.gz processed_file_md5 a2c04c7c66f149d21494c939d80489e3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF035HJW_RCCACYAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF035HJW_RCCACYAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF035HJW_RCCACYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF035HJW_RCCACYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 00e899c13195ac04c11a8d1270a90be3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue male adult (54 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF035HJW;ENCODE_bigBed_id=ENCFF631QRY;PMID=34755879;Motif_sequence=RCCACYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR492ZIW] [Life stage: Adult] [TFBS]
CTCF • Parathyroid adenoma NGFTBIT6AQRIRY • Factorbook34755879 Motif finding Parathyroid adenoma TFBS Show metadata Download track Track metadata identifier NGFTBIT6AQRIRY data_source Factorbook Download track Download number_of_intervals 173 bp_covered 2,595 output_type transcription factor binding sites significant genome_build hg38 cell_type Parathyroid adenoma biosample_type Tissue biosample_term_id Not available tissue_category Endocrine encode_experiment_id ENCSR780OZE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,113 downloaded_date 07/10/2024 release_date 12/08/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF724EMP_DCCASYAGRGGGCGS_filtered.bed.gz processed_file_md5 7711875f24712c3b86bc16d2c736a8d1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF724EMP_DCCASYAGRGGGCGS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF724EMP_DCCASYAGRGGGCGS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF724EMP_DCCASYAGRGGGCGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF724EMP_DCCASYAGRGGGCGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 383bfa1b48e6c323017d92a13e567fa9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens parathyroid adenoma tissue male adult (62 years);Original_cell_type=parathyroid adenoma;Lab=Bradley Bernstein, Broad;System=endocrine system;ENCODE_BED_id=ENCFF724EMP;ENCODE_bigBed_id=ENCFF173CEN;PMID=34755879;Motif_sequence=DCCASYAGRGGGCGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=NTR:0001226;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Parathyroid adenoma (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR780OZE] [Life stage: Adult] [TFBS]