ATF7 • GM12878 NGENCKHWYSTH7B • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCKHWYSTH7B data_source ENCODE Download track Download number_of_intervals 29,925 bp_covered 12,536,735 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR014YCR biological_replicate 2 technical_replicate 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 521,345 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF686CBX.bed.gz processed_file_md5 14e6fdddf070976f60f3a5930e531582 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF686CBX.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF686CBX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF686CBX/@@download/ENCFF686CBX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF686CBX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7ab6d753d4158abc7e940f0f3a785246 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE105204;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR014YCR] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • MCF-7 NGENCLOXXSFXOG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCLOXXSFXOG data_source ENCODE Download track Download number_of_intervals 17,840 bp_covered 6,836,599 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR866QPZ biological_replicate 1 technical_replicate 1_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 308,931 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF106HJV.bed.gz processed_file_md5 6d6fa5acaccc1f92702275718eb53050 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF106HJV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF106HJV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF106HJV/@@download/ENCFF106HJV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF106HJV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ea9393adb04f0c171f407684f7b8a043 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE106025;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR866QPZ] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • HepG2 NGENCMEBLF7EEC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCMEBLF7EEC data_source ENCODE Download track Download number_of_intervals 8,451 bp_covered 4,156,052 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR516DDO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 160,217 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF508TAJ.bed.gz processed_file_md5 0d8ab9c4c31777b54f772fabe38dc331 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF508TAJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF508TAJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF508TAJ/@@download/ENCFF508TAJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF508TAJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ba7b3923fc4d89b665951a1c6e148816 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170434;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ATF7 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR516DDO] [Life stage: Child] [TF ChIP-seq peaks]
ATF7 • HepG2 NGENCNE6NBPC7E • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCNE6NBPC7E data_source ENCODE Download track Download number_of_intervals 10,840 bp_covered 5,350,552 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR516DDO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 206,432 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF589EBD.bed.gz processed_file_md5 e3676b0bc3222c8b3524f6e6e5b4d204 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF589EBD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF589EBD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF589EBD/@@download/ENCFF589EBD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF589EBD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 017457d6189a336b60449de20ed5c281 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170434;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR516DDO] [Life stage: Child] [TF ChIP-seq peaks]
ATF7 • HepG2 NGENCOD3JYB5LG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCOD3JYB5LG data_source ENCODE Download track Download number_of_intervals 21,710 bp_covered 7,143,771 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR545FXC biological_replicate 2 technical_replicate 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 385,126 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF140KMT.bed.gz processed_file_md5 499acb5fb31f5ee3219991d7086da8fc wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF140KMT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF140KMT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF140KMT/@@download/ENCFF140KMT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF140KMT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3c1b921eebc151f8981ead66d27cd7f7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE105675;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR545FXC] [Life stage: Child] [TF ChIP-seq peaks]
ATF7 • K562 NGENCPPDMTSCOZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCPPDMTSCOZ data_source ENCODE Download track Download number_of_intervals 36,236 bp_covered 17,375,432 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR972ZBV biological_replicate 1 technical_replicate 1_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 701,233 downloaded_date 06/12/2022 release_date 03/19/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF847YWZ.bed.gz processed_file_md5 ce5776bf7c425d34608d173982dc9e49 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF847YWZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF847YWZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF847YWZ/@@download/ENCFF847YWZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF847YWZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d3f806b891690a370729f998e538333e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105955;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR972ZBV] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • GM12878 NGENCRBA632SZJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCRBA632SZJ data_source ENCODE Download track Download number_of_intervals 41,090 bp_covered 18,134,847 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR014YCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 734,573 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF668NDU.bed.gz processed_file_md5 940b06f11b32636de1a84e3a4effd1de wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF668NDU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF668NDU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF668NDU/@@download/ENCFF668NDU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF668NDU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 07e08297883ebadc6e07fa9c502f129a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE105204;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq ATF7 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR014YCR] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • K562 NGENCSEGB63JET • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCSEGB63JET data_source ENCODE Download track Download number_of_intervals 20,208 bp_covered 9,125,704 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR972ZBV biological_replicate 2 technical_replicate 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 391,688 downloaded_date 06/12/2022 release_date 03/19/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF316YQN.bed.gz processed_file_md5 d08e7d30c168fc61a013763d62e084f0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF316YQN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF316YQN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF316YQN/@@download/ENCFF316YQN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF316YQN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6555f4f102dc2bfd9fe83137457d155c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105955;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR972ZBV] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • MCF-7 NGENCURCFCVXPD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCURCFCVXPD data_source ENCODE Download track Download number_of_intervals 24,036 bp_covered 8,803,320 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR866QPZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 482,146 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF578WKB.bed.gz processed_file_md5 329126b312532c46028d6e975b3ca691 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF578WKB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF578WKB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF578WKB/@@download/ENCFF578WKB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF578WKB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f353a104bd66b82dc8c810e4a0f6c05f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE106025;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR866QPZ] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • MCF-7 NGENCVTFTWVJCN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCVTFTWVJCN data_source ENCODE Download track Download number_of_intervals 9,930 bp_covered 3,427,072 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR866QPZ biological_replicate 2 technical_replicate 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 197,421 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF112PQO.bed.gz processed_file_md5 1c75c410514e988956744cb9279ad37d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF112PQO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF112PQO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF112PQO/@@download/ENCFF112PQO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF112PQO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 38c0025372be6cab1701b8272f96585a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=adult 69 years;Reference=NR;External_resources=GEO:GSE106025;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR866QPZ] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • GM12878 NGENCVZDK3JROY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCVZDK3JROY data_source ENCODE Download track Download number_of_intervals 41,275 bp_covered 18,206,009 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR014YCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay TF ChIP-seq file_format bed narrowPeak file_size 736,351 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF037PYH.bed.gz processed_file_md5 0a0e561fd1961f278b9a44b9783bd23e wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF037PYH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF037PYH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF037PYH/@@download/ENCFF037PYH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF037PYH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5b4181869b0a272160e06ec6092097a2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE105204;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-07-08,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq ATF7 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR014YCR] [Life stage: Adult] [TF ChIP-seq peaks]
ATF7 • HepG2 NGFTB2GFOFFXO6 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB2GFOFFXO6 data_source Factorbook Download track Download number_of_intervals 34,033 bp_covered 374,363 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR545FXC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 445,762 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_GRTGATGTCAT_sorted.bed.gz processed_file_md5 ef32be0e687883bae29b87c2d3da3f9d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_GRTGATGTCAT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_GRTGATGTCAT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF788ONH_GRTGATGTCAT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF788ONH_GRTGATGTCAT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 058fadae89ffaf38fffbfdd86c901d05 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF788ONH;ENCODE_bigBed_id=ENCFF470FKK;PMID=34755879;Motif_sequence=GRTGATGTCAT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR545FXC] [Life stage: Child] [TFBS]
ATF7 • HepG2 NGFTB2HR36SBJF • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB2HR36SBJF data_source Factorbook Download track Download number_of_intervals 340 bp_covered 10,200 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR545FXC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,339 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR_filtered.bed.gz processed_file_md5 a527fd33d2400824a8f42fd39f56eb81 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2a9266f846c21c76459c8c7ace8493ed data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF788ONH;ENCODE_bigBed_id=ENCFF470FKK;PMID=34755879;Motif_sequence=TYTTATAAGGACABYAGTCAYATTRGATTR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR545FXC] [Life stage: Child] [TFBS]
ATF7 • HepG2 NGFTB3ZSQWTLKR • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTB3ZSQWTLKR data_source Factorbook Download track Download number_of_intervals 3,997 bp_covered 119,910 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR545FXC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 98,171 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR_sorted.bed.gz processed_file_md5 dacffb18483962500922f3acbff51db9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF788ONH_TYTTATAAGGACABYAGTCAYATTRGATTR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2a9266f846c21c76459c8c7ace8493ed data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF788ONH;ENCODE_bigBed_id=ENCFF470FKK;PMID=34755879;Motif_sequence=TYTTATAAGGACABYAGTCAYATTRGATTR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR545FXC] [Life stage: Child] [TFBS]
ATF7 • K562 NGFTBIKOEOHNFJ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBIKOEOHNFJ data_source Factorbook Download track Download number_of_intervals 20,799 bp_covered 291,186 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR972ZBV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 287,756 downloaded_date 07/10/2024 release_date 07/07/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951BFN_SATGACGTCAYYNN_sorted.bed.gz processed_file_md5 031aee52960e6f70f50017d41b0aef4f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951BFN_SATGACGTCAYYNN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951BFN_SATGACGTCAYYNN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF951BFN_SATGACGTCAYYNN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF951BFN_SATGACGTCAYYNN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bf4dab18a1d7de8c8432dd3d7e174e0e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF951BFN;ENCODE_bigBed_id=ENCFF308SKS;PMID=34755879;Motif_sequence=SATGACGTCAYYNN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR972ZBV] [Life stage: Adult] [TFBS]
ATF7 • HepG2 NGFTBIPTWKGAX2 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBIPTWKGAX2 data_source Factorbook Download track Download number_of_intervals 52,615 bp_covered 789,225 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR545FXC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 836,392 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_DVVATGACGTCATCH_sorted.bed.gz processed_file_md5 2ec54e03c5c13e4ff9a0f74e5961321e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_DVVATGACGTCATCH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF788ONH_DVVATGACGTCATCH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF788ONH_DVVATGACGTCATCH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF788ONH_DVVATGACGTCATCH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4766c761b9c1994f9bfb6509dd25d791 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF788ONH;ENCODE_bigBed_id=ENCFF470FKK;PMID=34755879;Motif_sequence=DVVATGACGTCATCH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR545FXC] [Life stage: Child] [TFBS]
ATF7 • MCF-7 NGFTBJNRWHKPI3 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBJNRWHKPI3 data_source Factorbook Download track Download number_of_intervals 32,544 bp_covered 455,616 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR866QPZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 502,374 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF261DZR_RDGATGACGTCATB_sorted.bed.gz processed_file_md5 b3e39d782e6f39634632733f740c5ca4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF261DZR_RDGATGACGTCATB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF261DZR_RDGATGACGTCATB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF261DZR_RDGATGACGTCATB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF261DZR_RDGATGACGTCATB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 764bcdf681ce0d8d47c66f6f46560e88 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF261DZR;ENCODE_bigBed_id=ENCFF578WKB;PMID=34755879;Motif_sequence=RDGATGACGTCATB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR866QPZ] [Life stage: Adult] [TFBS]
ATF7 • MCF-7 NGFTBL6IRDZ7F5 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBL6IRDZ7F5 data_source Factorbook Download track Download number_of_intervals 13,971 bp_covered 209,565 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR866QPZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 174,849 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF261DZR_CATCATCAMCATCAY_sorted.bed.gz processed_file_md5 fa121550a3c1e206300cd142d5c80a1b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF261DZR_CATCATCAMCATCAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF261DZR_CATCATCAMCATCAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF261DZR_CATCATCAMCATCAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF261DZR_CATCATCAMCATCAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b16d8165417b800dfae65e1cc78d65b9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF261DZR;ENCODE_bigBed_id=ENCFF578WKB;PMID=34755879;Motif_sequence=CATCATCAMCATCAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR866QPZ] [Life stage: Adult] [TFBS]
ATF7 • HepG2 NGFTBRBC2ZVWLP • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBRBC2ZVWLP data_source Factorbook Download track Download number_of_intervals 6,967 bp_covered 125,406 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR545FXC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 76,163 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF788ONH_CATCAYCATCAYCAYCAY_filtered.bed.gz processed_file_md5 0788b8b4ad30effdbc19951a63958efd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF788ONH_CATCAYCATCAYCAYCAY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF788ONH_CATCAYCATCAYCAYCAY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF788ONH_CATCAYCATCAYCAYCAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF788ONH_CATCAYCATCAYCAYCAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 57d461dc0ae2a1da5c6c207139f52b10 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF788ONH;ENCODE_bigBed_id=ENCFF470FKK;PMID=34755879;Motif_sequence=CATCAYCATCAYCAYCAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR545FXC] [Life stage: Child] [TFBS]
ATF7 • GM12878 NGFTBTVVPJ7VEX • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBTVVPJ7VEX data_source Factorbook Download track Download number_of_intervals 19,202 bp_covered 249,626 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR014YCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody ATF7 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 272,145 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF277FJJ_DNRATGACGTCAY_sorted.bed.gz processed_file_md5 3d585ab20f8625e1d24f93d451be6279 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF277FJJ_DNRATGACGTCAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF277FJJ_DNRATGACGTCAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF277FJJ_DNRATGACGTCAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF277FJJ_DNRATGACGTCAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4c98482fd27955098d580945fbb500e1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF277FJJ;ENCODE_bigBed_id=ENCFF037PYH;PMID=34755879;Motif_sequence=DNRATGACGTCAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding ATF7 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR014YCR] [TFBS]