CTCF • HCT116 NGFTBITRDZJ237 • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBITRDZJ237 data_source Factorbook Download track Download number_of_intervals 50,027 bp_covered 700,378 output_type transcription factor binding sites all genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR240PRQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 806,246 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_CGCCMYCTRSTGGC_sorted.bed.gz processed_file_md5 1e557cac0573c21a8bad30dca65bc58e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_CGCCMYCTRSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_CGCCMYCTRSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF803RIY_CGCCMYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF803RIY_CGCCMYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fd7ef091e47cbe522813987c356286c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=Bradley Bernstein, Broad;System=digestive system;ENCODE_BED_id=ENCFF803RIY;ENCODE_bigBed_id=ENCFF402LTB;PMID=34755879;Motif_sequence=CGCCMYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR240PRQ] [Life stage: Adult] [TFBS]
CTCF • GM06990 NGFTBIXHZLPJAT • Factorbook34755879 Motif finding GM06990 TFBS Show metadata Download track Track metadata identifier NGFTBIXHZLPJAT data_source Factorbook Download track Download number_of_intervals 42,455 bp_covered 636,825 output_type transcription factor binding sites all genome_build hg38 cell_type GM06990 biosample_type Cell line biosample_term_id EFO:0002783 tissue_category Blood encode_experiment_id ENCSR000DQW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 706,745 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_WGCGCCCCCTGSTGG_sorted.bed.gz processed_file_md5 6c06d6b1df874cfa088a7eb66ea498b4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_WGCGCCCCCTGSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_WGCGCCCCCTGSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF031WEA_WGCGCCCCCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF031WEA_WGCGCCCCCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 99494a2181f81e3615ad589818f7d014 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM06990;Original_cell_type=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF031WEA;ENCODE_bigBed_id=ENCFF471OQT;PMID=34755879;Motif_sequence=WGCGCCCCCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002783;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM06990 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQW] [TFBS]
CTCF • GM10248 NGFTBIY5OUAMIF • Factorbook34755879 Motif finding GM10248 TFBS Show metadata Download track Track metadata identifier NGFTBIY5OUAMIF data_source Factorbook Download track Download number_of_intervals 33,110 bp_covered 496,650 output_type transcription factor binding sites all genome_build hg38 cell_type GM10248 biosample_type Cell line biosample_term_id EFO:0005334 tissue_category Blood encode_experiment_id ENCSR000DKP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 556,308 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF180XBL_CCASCAGRGGGCGCN_sorted.bed.gz processed_file_md5 9df35bd3cb7b56ce4c34257149c6d99e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF180XBL_CCASCAGRGGGCGCN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF180XBL_CCASCAGRGGGCGCN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF180XBL_CCASCAGRGGGCGCN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF180XBL_CCASCAGRGGGCGCN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 116bea238ee0de3ce46a0abf5366cfe8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM10248;Original_cell_type=GM10248;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF180XBL;ENCODE_bigBed_id=ENCFF083HVS;PMID=34755879;Motif_sequence=CCASCAGRGGGCGCN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005334;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM10248 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKP] [Life stage: Adult] [TFBS]
CTCF • DOHH2 NGFTBJ23XNULYQ • Factorbook34755879 Motif finding DOHH2 TFBS Show metadata Download track Track metadata identifier NGFTBJ23XNULYQ data_source Factorbook Download track Download number_of_intervals 25,212 bp_covered 201,696 output_type transcription factor binding sites all genome_build hg38 cell_type DOHH2 biosample_type Cell line biosample_term_id EFO:0002167 tissue_category Blood encode_experiment_id ENCSR084RDK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 209,540 downloaded_date 07/10/2024 release_date 07/11/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF102KXV_CTGCAGYY_sorted.bed.gz processed_file_md5 dcef0792f09abd065f28e467b7a00f78 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF102KXV_CTGCAGYY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF102KXV_CTGCAGYY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF102KXV_CTGCAGYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF102KXV_CTGCAGYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 375b0fa9a7cd0901e8a1ec594ab65069 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens DOHH2;Original_cell_type=DOHH2;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF102KXV;ENCODE_bigBed_id=ENCFF087WWA;PMID=34755879;Motif_sequence=CTGCAGYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002167;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook DOHH2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR084RDK] [Life stage: Adult] [TFBS]
CTCF • Astrocyte NGFTBJ4MXHKYX4 • Factorbook34755879 Motif finding Astrocyte TFBS Show metadata Download track Track metadata identifier NGFTBJ4MXHKYX4 data_source Factorbook Download track Download number_of_intervals 6,106 bp_covered 183,180 output_type transcription factor binding sites all genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000DSZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 147,996 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF674KSP_TYYYHTTTGCCAGCTGGYRCVATGYTAGGC_sorted.bed.gz processed_file_md5 d14bf1f2fc8c0fe89cfc4a5eb62fad4f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF674KSP_TYYYHTTTGCCAGCTGGYRCVATGYTAGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF674KSP_TYYYHTTTGCCAGCTGGYRCVATGYTAGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF674KSP_TYYYHTTTGCCAGCTGGYRCVATGYTAGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF674KSP_TYYYHTTTGCCAGCTGGYRCVATGYTAGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 16b26965f8c41ed880d9efb1d6f64491 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens astrocyte of the cerebellum;Original_cell_type=astrocyte of the cerebellum;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF674KSP;ENCODE_bigBed_id=ENCFF511OCS;PMID=34755879;Motif_sequence=TYYYHTTTGCCAGCTGGYRCVATGYTAGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002603;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name Factorbook Astrocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DSZ] [TFBS]
CTCF • Panc1 NGFTBJ52MU6GRP • Factorbook34755879 Motif finding Panc1 TFBS Show metadata Download track Track metadata identifier NGFTBJ52MU6GRP data_source Factorbook Download track Download number_of_intervals 72,987 bp_covered 1,094,805 output_type transcription factor binding sites all genome_build hg38 cell_type Panc1 biosample_type Cell line biosample_term_id EFO:0002713 tissue_category Pancreas encode_experiment_id ENCSR203QEB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 822,312 downloaded_date 07/10/2024 release_date 07/21/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF504IUB_CCASCAGGTGGCRCT_sorted.bed.gz processed_file_md5 20b951f56ed51cd1984690c5bf1f143c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF504IUB_CCASCAGGTGGCRCT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF504IUB_CCASCAGGTGGCRCT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF504IUB_CCASCAGGTGGCRCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF504IUB_CCASCAGGTGGCRCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f855de1bcc7178768cc8ff8d726d02d9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Panc1;Original_cell_type=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF504IUB;ENCODE_bigBed_id=ENCFF056JQX;PMID=34755879;Motif_sequence=CCASCAGGTGGCRCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002713;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Panc1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR203QEB] [Life stage: Adult] [TFBS]
CTCF • Atrium auricular region NGFTBJDCKWWLZT • Factorbook34755879 Motif finding Atrium auricular region TFBS Show metadata Download track Track metadata identifier NGFTBJDCKWWLZT data_source Factorbook Download track Download number_of_intervals 22,703 bp_covered 340,545 output_type transcription factor binding sites all genome_build hg38 cell_type Atrium auricular region biosample_type Tissue biosample_term_id UBERON:0006618 tissue_category Heart encode_experiment_id ENCSR066GBX biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 394,945 downloaded_date 07/10/2024 release_date 02/10/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF779BFW_RCCACCAGGKGGCRS_sorted.bed.gz processed_file_md5 94f349b013d3813eee7b89543fe8ffa5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF779BFW_RCCACCAGGKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF779BFW_RCCACCAGGKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF779BFW_RCCACCAGGKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF779BFW_RCCACCAGGKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a997991dc0349f40ed6492f29226a59b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens right atrium auricular region tissue female adult (53 years);Original_cell_type=right atrium auricular region;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF779BFW;ENCODE_bigBed_id=ENCFF690LBT;PMID=34755879;Motif_sequence=RCCACCAGGKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006631;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Atrium auricular region (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR066GBX] [Life stage: Adult] [TFBS]
CTCF • Tibial nerve NGFTBJEDGUI7P6 • Factorbook34755879 Motif finding Tibial nerve TFBS Show metadata Download track Track metadata identifier NGFTBJEDGUI7P6 data_source Factorbook Download track Download number_of_intervals 35,275 bp_covered 529,125 output_type transcription factor binding sites all genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR822PJT biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 527,880 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF302VBR_GYGCCCYCTGSTGGC_sorted.bed.gz processed_file_md5 2fa3450aabe773179b7210a409c665d6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF302VBR_GYGCCCYCTGSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF302VBR_GYGCCCYCTGSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF302VBR_GYGCCCYCTGSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF302VBR_GYGCCCYCTGSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c4914386d3eda0ef63d70c7f411f3144 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens tibial nerve tissue female adult (51 years);Original_cell_type=tibial nerve;Lab=Michael Snyder, Stanford;System=peripheral nervous system;ENCODE_BED_id=ENCFF302VBR;ENCODE_bigBed_id=ENCFF665IWH;PMID=34755879;Motif_sequence=GYGCCCYCTGSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Tibial nerve (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR822PJT] [Life stage: Adult] [TFBS]
CTCF • T47D NGFTBJEPFV573K • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTBJEPFV573K data_source Factorbook Download track Download number_of_intervals 4,261 bp_covered 89,481 output_type transcription factor binding sites all genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BNO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 85,031 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_GAGCKBCCYCKKGTGTCYTGA_sorted.bed.gz processed_file_md5 8bd7bb573e50b8782770a9d024817260 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_GAGCKBCCYCKKGTGTCYTGA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_GAGCKBCCYCKKGTGTCYTGA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF524DPR_GAGCKBCCYCKKGTGTCYTGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF524DPR_GAGCKBCCYCKKGTGTCYTGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 25a99257f8f298f0583fbd217071b63c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF524DPR;ENCODE_bigBed_id=ENCFF063ZXA;PMID=34755879;Motif_sequence=GAGCKBCCYCKKGTGTCYTGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNO] [Life stage: Adult] [TFBS]
CTCF • Uterus NGFTBJERDDHHIZ • Factorbook34755879 Motif finding Uterus TFBS Show metadata Download track Track metadata identifier NGFTBJERDDHHIZ data_source Factorbook Download track Download number_of_intervals 161 bp_covered 3,381 output_type transcription factor binding sites significant genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id ENCSR392SFJ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,973 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR_filtered.bed.gz processed_file_md5 98acff5d115d90df54902fc69a4c84ae wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 80379575c015b4208495e464cac55e21 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens uterus tissue female adult (53 years);Original_cell_type=uterus;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF201PUR;ENCODE_bigBed_id=ENCFF466ZUR;PMID=34755879;Motif_sequence=HKYGGCCASNAGRKGGCRSYR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000995;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Uterus (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR392SFJ] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBJFAOXYORG • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBJFAOXYORG data_source Factorbook Download track Download number_of_intervals 358 bp_covered 5,370 output_type transcription factor binding sites significant genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DVP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,963 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF825TEN_KCCRSCAGRGGGCRC_filtered.bed.gz processed_file_md5 01616a850a93d36b0dc218dda697b3a2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF825TEN_KCCRSCAGRGGGCRC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF825TEN_KCCRSCAGRGGGCRC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF825TEN_KCCRSCAGRGGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF825TEN_KCCRSCAGRGGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8268f14cba9313a453a093f45f02aaa2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=John Stamatoyannopoulos, UW;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF825TEN;ENCODE_bigBed_id=ENCFF677IZD;PMID=34755879;Motif_sequence=KCCRSCAGRGGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVP] [TFBS]
CTCF • GM10248 NGFTBJHEWNTSRN • Factorbook34755879 Motif finding GM10248 TFBS Show metadata Download track Track metadata identifier NGFTBJHEWNTSRN data_source Factorbook Download track Download number_of_intervals 307 bp_covered 4,605 output_type transcription factor binding sites significant genome_build hg38 cell_type GM10248 biosample_type Cell line biosample_term_id EFO:0005334 tissue_category Blood encode_experiment_id ENCSR000DKP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,551 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF180XBL_CCASCAGRGGGCGCN_filtered.bed.gz processed_file_md5 9275c90c121c3d2f6079cc35caae5e42 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF180XBL_CCASCAGRGGGCGCN_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF180XBL_CCASCAGRGGGCGCN_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF180XBL_CCASCAGRGGGCGCN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF180XBL_CCASCAGRGGGCGCN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 116bea238ee0de3ce46a0abf5366cfe8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM10248;Original_cell_type=GM10248;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF180XBL;ENCODE_bigBed_id=ENCFF083HVS;PMID=34755879;Motif_sequence=CCASCAGRGGGCGCN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005334;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM10248 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKP] [Life stage: Adult] [TFBS]
CTCF • Uterus NGFTBJI7FZFEIU • Factorbook34755879 Motif finding Uterus TFBS Show metadata Download track Track metadata identifier NGFTBJI7FZFEIU data_source Factorbook Download track Download number_of_intervals 5,505 bp_covered 110,100 output_type transcription factor binding sites all genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id ENCSR798NVH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 108,494 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_MAVDNKSGGMAYTGCAGCCN_sorted.bed.gz processed_file_md5 c5faef51abb706ebb408240ddc89d194 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_MAVDNKSGGMAYTGCAGCCN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_MAVDNKSGGMAYTGCAGCCN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF421VTZ_MAVDNKSGGMAYTGCAGCCN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF421VTZ_MAVDNKSGGMAYTGCAGCCN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0e49d01b1e51615a6442f8d465ff23e5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens uterus tissue female adult (51 years);Original_cell_type=uterus;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF421VTZ;ENCODE_bigBed_id=ENCFF631BWF;PMID=34755879;Motif_sequence=MAVDNKSGGMAYTGCAGCCN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000995;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Uterus (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR798NVH] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTBJLFLUIFPJ • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBJLFLUIFPJ data_source Factorbook Download track Download number_of_intervals 35,517 bp_covered 532,755 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR000DNI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 615,939 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273TNH_GCCACCAGRKGGCRS_sorted.bed.gz processed_file_md5 ea786a082a114c3dadc9620682f5afa3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273TNH_GCCACCAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF273TNH_GCCACCAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF273TNH_GCCACCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF273TNH_GCCACCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ad79f60d31406638568ec9dceb59a564 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue female adult (20 years) and female adult (30 years);Original_cell_type=spleen;Lab=Vishwanath Iyer, UTA;System=digestive system,immune system;ENCODE_BED_id=ENCFF273TNH;ENCODE_bigBed_id=ENCFF678RAG;PMID=34755879;Motif_sequence=GCCACCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DNI] [Life stage: Adult] [TFBS]
CTCF • Sigmoid colon NGFTBJMTSMICBV • Factorbook34755879 Motif finding Sigmoid colon TFBS Show metadata Download track Track metadata identifier NGFTBJMTSMICBV data_source Factorbook Download track Download number_of_intervals 8,910 bp_covered 160,380 output_type transcription factor binding sites all genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id ENCSR721AHD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 155,179 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF480QYI_GSCTGCAGTTCCVVNNNY_sorted.bed.gz processed_file_md5 33c55a97a242f8fa1d52d4def9090697 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF480QYI_GSCTGCAGTTCCVVNNNY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF480QYI_GSCTGCAGTTCCVVNNNY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF480QYI_GSCTGCAGTTCCVVNNNY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF480QYI_GSCTGCAGTTCCVVNNNY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 217f1879c50bc992a255dc1ec4610a80 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens sigmoid colon tissue male adult (37 years);Original_cell_type=sigmoid colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF480QYI;ENCODE_bigBed_id=ENCFF219LPW;PMID=34755879;Motif_sequence=GSCTGCAGTTCCVVNNNY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Sigmoid colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR721AHD] [Life stage: Adult] [TFBS]
CTCF • Kidney NGFTBJNQOSLGPK • Factorbook34755879 Motif finding Kidney TFBS Show metadata Download track Track metadata identifier NGFTBJNQOSLGPK data_source Factorbook Download track Download number_of_intervals 4,337 bp_covered 47,707 output_type transcription factor binding sites all genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id ENCSR000DMC biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 65,930 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498EED_KGGAACTGCAG_sorted.bed.gz processed_file_md5 7e0a207e15a6edd544654ac3995d8469 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498EED_KGGAACTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498EED_KGGAACTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF498EED_KGGAACTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF498EED_KGGAACTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 88a99901f195b2bc5ffd8db547cc5c59 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens kidney tissue male adult (22 years) and male adult (27 years) and male adult (35 years);Original_cell_type=kidney;Lab=Vishwanath Iyer, UTA;System=excretory system;ENCODE_BED_id=ENCFF498EED;ENCODE_bigBed_id=ENCFF335EKK;PMID=34755879;Motif_sequence=KGGAACTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002113;is_hg38_lifted=no system_category Renal life_stage Adult track_name Factorbook Kidney (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMC] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBJNTE2CCFR • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBJNTE2CCFR data_source Factorbook Download track Download number_of_intervals 61,295 bp_covered 919,425 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,067,094 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683EEW_CCASYAGRKGGCRSY_sorted.bed.gz processed_file_md5 460d631ff6a58846d76596607eb90087 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683EEW_CCASYAGRKGGCRSY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF683EEW_CCASYAGRKGGCRSY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF683EEW_CCASYAGRKGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF683EEW_CCASYAGRKGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2cac50f5e5c44263696295966bec14b0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF683EEW;ENCODE_bigBed_id=ENCFF339FST;PMID=34755879;Motif_sequence=CCASYAGRKGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMR] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBJNXWV3O5T • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBJNXWV3O5T data_source Factorbook Download track Download number_of_intervals 26,465 bp_covered 714,555 output_type transcription factor binding sites all genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000ALA biological_replicate 1 technical_replicate 1_1, 1_2, 1_3 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 592,024 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD_sorted.bed.gz processed_file_md5 05883b4ea7c06d51e33d7192e6164c15 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF949KVG_VHKYCMNBHWDTGGCCASYAGRGGGCD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f2a7ba59156bfc54278aa5b6a702189a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Bradley Bernstein, Broad;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF949KVG;ENCODE_bigBed_id=ENCFF947JAB;PMID=34755879;Motif_sequence=VHKYCMNBHWDTGGCCASYAGRGGGCD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ALA] [TFBS]
CTCF • Astrocyte NGFTBJOCKUQPVP • Factorbook34755879 Motif finding Astrocyte TFBS Show metadata Download track Track metadata identifier NGFTBJOCKUQPVP data_source Factorbook Download track Download number_of_intervals 10,044 bp_covered 150,660 output_type transcription factor binding sites all genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Nervous encode_experiment_id ENCSR000DSU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 172,035 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF901WRI_GSCTGCAGTKCCMCH_sorted.bed.gz processed_file_md5 4b7ce8cf1b5e3b649565aef1b7669907 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF901WRI_GSCTGCAGTKCCMCH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF901WRI_GSCTGCAGTKCCMCH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF901WRI_GSCTGCAGTKCCMCH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF901WRI_GSCTGCAGTKCCMCH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ae47e117060b455d7dc57034a27ffe10 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens astrocyte of the spinal cord;Original_cell_type=astrocyte of the spinal cord;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF901WRI;ENCODE_bigBed_id=ENCFF213GKL;PMID=34755879;Motif_sequence=GSCTGCAGTKCCMCH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002606;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name Factorbook Astrocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DSU] [TFBS]
CTCF • Spleen NGFTBJR3AL5EUR • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBJR3AL5EUR data_source Factorbook Download track Download number_of_intervals 38,166 bp_covered 572,490 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR482PMN biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 649,498 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_SYGCCMYCTGGTGGC_sorted.bed.gz processed_file_md5 3f2cb5708d79e3a35164875e03fe0ea0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_SYGCCMYCTGGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_SYGCCMYCTGGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF047BEO_SYGCCMYCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF047BEO_SYGCCMYCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b8a0f1d1cd475502b60912db2adce3de data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue female adult (51 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF047BEO;ENCODE_bigBed_id=ENCFF077XIZ;PMID=34755879;Motif_sequence=SYGCCMYCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR482PMN] [Life stage: Adult] [TFBS]