CTCF • A549 NGFTBKCO3K2OLM • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBKCO3K2OLM data_source Factorbook Download track Download number_of_intervals 73,281 bp_covered 1,025,934 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000AUF biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 917,814 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299IYU_CCASYAGRGGGCGS_sorted.bed.gz processed_file_md5 ac5c99d08dd07b729b785bb9fbbda577 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299IYU_CCASYAGRGGGCGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF299IYU_CCASYAGRGGGCGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF299IYU_CCASYAGRGGGCGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF299IYU_CCASYAGRGGGCGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7b65cd13b8538d52cff01d871062839b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF299IYU;ENCODE_bigBed_id=ENCFF439TSJ;PMID=34755879;Motif_sequence=CCASYAGRGGGCGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUF] [Life stage: Adult] [TFBS]
CTCF • Gastroesophageal sphincter NGFTBKD6ZSJYO6 • Factorbook34755879 Motif finding Gastroesophageal sphincter TFBS Show metadata Download track Track metadata identifier NGFTBKD6ZSJYO6 data_source Factorbook Download track Download number_of_intervals 43,604 bp_covered 654,060 output_type transcription factor binding sites all genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR146BGM biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 713,720 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF822FUJ_GCCACCAGRKGGCRS_sorted.bed.gz processed_file_md5 74e8974b3d6b7d335368b43fb4f66436 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF822FUJ_GCCACCAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF822FUJ_GCCACCAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF822FUJ_GCCACCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF822FUJ_GCCACCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b0bee8d51991cb69163a1170f2a7d149 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue female adult (51 years);Original_cell_type=gastroesophageal sphincter;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF822FUJ;ENCODE_bigBed_id=ENCFF125ESZ;PMID=34755879;Motif_sequence=GCCACCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Gastroesophageal sphincter (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR146BGM] [Life stage: Adult] [TFBS]
CTCF • Skin NGFTBKDD4N43FD • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTBKDD4N43FD data_source Factorbook Download track Download number_of_intervals 1,426 bp_covered 25,668 output_type transcription factor binding sites significant genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR515LRI biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 23,229 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF642DLX_YGGCCACCAGRKGGCRSY_filtered.bed.gz processed_file_md5 0b7bff8a1f83d74df7e7be5cbed51b0c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF642DLX_YGGCCACCAGRKGGCRSY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF642DLX_YGGCCACCAGRKGGCRSY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF642DLX_YGGCCACCAGRKGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF642DLX_YGGCCACCAGRKGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bb9823aca6093240be11f91441606be5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens suprapubic skin tissue female adult (53 years);Original_cell_type=suprapubic skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF642DLX;ENCODE_bigBed_id=ENCFF916QXW;PMID=34755879;Motif_sequence=YGGCCACCAGRKGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR515LRI] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBKDUKELXMF • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBKDUKELXMF data_source Factorbook Download track Download number_of_intervals 62,650 bp_covered 1,065,050 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,115,888 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_GCCASCAGRKGGCRSYV_sorted.bed.gz processed_file_md5 8841d6756467ee744c24c0316a16d8dc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_GCCASCAGRKGGCRSYV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_GCCASCAGRKGGCRSYV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF163JHE_GCCASCAGRKGGCRSYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF163JHE_GCCASCAGRKGGCRSYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 67075a7e0313873f3132db04756e717a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF163JHE;ENCODE_bigBed_id=ENCFF414SZG;PMID=34755879;Motif_sequence=GCCASCAGRKGGCRSYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMV] [Life stage: Adult] [TFBS]
CTCF • Liver NGFTBKDWX6L2WQ • Factorbook34755879 Motif finding Liver TFBS Show metadata Download track Track metadata identifier NGFTBKDWX6L2WQ data_source Factorbook Download track Download number_of_intervals 32,481 bp_covered 909,468 output_type transcription factor binding sites all genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR254YRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 740,660 downloaded_date 07/10/2024 release_date 04/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF095QMD_GCCCYCTRGTGGCCRSNNNKGGNMDBKS_sorted.bed.gz processed_file_md5 60e37d2a59f33949701e66a226c2348d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF095QMD_GCCCYCTRGTGGCCRSNNNKGGNMDBKS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF095QMD_GCCCYCTRGTGGCCRSNNNKGGNMDBKS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF095QMD_GCCCYCTRGTGGCCRSNNNKGGNMDBKS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF095QMD_GCCCYCTRGTGGCCRSNNNKGGNMDBKS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 03a80fcba0046d85165c5286231b8881 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens liver tissue female child (6 years) and with nonobstructive coronary artery disease| liver tissue male adult (32 years);Original_cell_type=liver;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF095QMD;ENCODE_bigBed_id=ENCFF895ERR;PMID=34755879;Motif_sequence=GCCCYCTRGTGGCCRSNNNKGGNMDBKS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name Factorbook Liver (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR254YRM] [TFBS]
CTCF • Muscularis mucosa NGFTBKE4MJ7LAR • Factorbook34755879 Motif finding Muscularis mucosa TFBS Show metadata Download track Track metadata identifier NGFTBKE4MJ7LAR data_source Factorbook Download track Download number_of_intervals 25,342 bp_covered 405,472 output_type transcription factor binding sites all genome_build hg38 cell_type Muscularis mucosa biosample_type Tissue biosample_term_id UBERON:0006676 tissue_category Digestive encode_experiment_id ENCSR353DFU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 453,387 downloaded_date 07/10/2024 release_date 04/04/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144ERC_YGCCMCCTRGTGGCCR_sorted.bed.gz processed_file_md5 95b4c1ed00fdebd4af8574927eb9f315 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144ERC_YGCCMCCTRGTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144ERC_YGCCMCCTRGTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF144ERC_YGCCMCCTRGTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF144ERC_YGCCMCCTRGTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9c1606e467accd81e4a3689673e0b729 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus muscularis mucosa tissue female adult (51 years);Original_cell_type=esophagus muscularis mucosa;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF144ERC;ENCODE_bigBed_id=ENCFF544GAS;PMID=34755879;Motif_sequence=YGCCMCCTRGTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004648;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Muscularis mucosa (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR353DFU] [Life stage: Adult] [TFBS]
CTCF • Astrocyte NGFTBKFOO64COM • Factorbook34755879 Motif finding Astrocyte TFBS Show metadata Download track Track metadata identifier NGFTBKFOO64COM data_source Factorbook Download track Download number_of_intervals 3 bp_covered 69 output_type transcription factor binding sites significant genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000AOO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 407 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF450EVR_GACAGAMACTAGGTRGAGCTCCA_filtered.bed.gz processed_file_md5 7bd15b800d3817d0c76bccf2a21c5a71 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF450EVR_GACAGAMACTAGGTRGAGCTCCA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF450EVR_GACAGAMACTAGGTRGAGCTCCA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF450EVR_GACAGAMACTAGGTRGAGCTCCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF450EVR_GACAGAMACTAGGTRGAGCTCCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a0eeeee4ce2ede75e98713a9a54302cf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens astrocyte;Original_cell_type=astrocyte;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF450EVR;ENCODE_bigBed_id=ENCFF042YJV;PMID=34755879;Motif_sequence=GACAGAMACTAGGTRGAGCTCCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000127;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name Factorbook Astrocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AOO] [TFBS]
CTCF • GM12878 NGFTBKILB6FWOG • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBKILB6FWOG data_source Factorbook Download track Download number_of_intervals 101 bp_covered 1,515 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DRZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,358 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF951PEM_CCASYAGGGGGCRSY_filtered.bed.gz processed_file_md5 ceb3c9aad5f5f873c935b8e3f9b0edcb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF951PEM_CCASYAGGGGGCRSY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF951PEM_CCASYAGGGGGCRSY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF951PEM_CCASYAGGGGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF951PEM_CCASYAGGGGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2bf89b392fdafe9256c95ac000b34520 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF951PEM;ENCODE_bigBed_id=ENCFF485TGR;PMID=34755879;Motif_sequence=CCASYAGGGGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRZ] [TFBS]
CTCF • GM23338 NGFTBKK25XSI2U • Factorbook34755879 Motif finding GM23338 TFBS Show metadata Download track Track metadata identifier NGFTBKK25XSI2U data_source Factorbook Download track Download number_of_intervals 16,721 bp_covered 250,815 output_type transcription factor binding sites all genome_build hg38 cell_type GM23338 biosample_type Induced pluripotent stem cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR987GXT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 264,292 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_DKKGGHACTGCAGCY_sorted.bed.gz processed_file_md5 62aedf10bf10334187d922dfc9bf1ef7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_DKKGGHACTGCAGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_DKKGGHACTGCAGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF991TMD_DKKGGHACTGCAGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF991TMD_DKKGGHACTGCAGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4fa7904f5fe6bb05570fa24f85422818 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Original_cell_type=GM23338;Lab=Bradley Bernstein, Broad;System=integumental system;ENCODE_BED_id=ENCFF991TMD;ENCODE_bigBed_id=ENCFF419AZG;PMID=34755879;Motif_sequence=DKKGGHACTGCAGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name Factorbook GM23338 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR987GXT] [Life stage: Adult] [TFBS]
CTCF • Stomach NGFTBKKELMGAI5 • Factorbook34755879 Motif finding Stomach TFBS Show metadata Download track Track metadata identifier NGFTBKKELMGAI5 data_source Factorbook Download track Download number_of_intervals 35,606 bp_covered 498,484 output_type transcription factor binding sites all genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id ENCSR173AIR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 582,829 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF346IVG_CCACCAGRKGGCRS_sorted.bed.gz processed_file_md5 72fea580078b7b7f9198a2570414c9fa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF346IVG_CCACCAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF346IVG_CCACCAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF346IVG_CCACCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF346IVG_CCACCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7c9ac90237f1c38464a0c156e7d27ee7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens stomach tissue female adult (51 years);Original_cell_type=stomach;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF346IVG;ENCODE_bigBed_id=ENCFF370OWL;PMID=34755879;Motif_sequence=CCACCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000945;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Stomach (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR173AIR] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBKML37SVBM • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBKML37SVBM data_source Factorbook Download track Download number_of_intervals 8,524 bp_covered 93,764 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Digestive encode_experiment_id ENCSR000DTR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 123,644 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF090ZEL_SCTGCAGTKCC_sorted.bed.gz processed_file_md5 e269ce298ff6d2bf9af866ff46dc12a9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF090ZEL_SCTGCAGTKCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF090ZEL_SCTGCAGTKCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF090ZEL_SCTGCAGTKCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF090ZEL_SCTGCAGTKCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9378b464d3af3c2f65d6d9eb21e9ad67 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens epithelial cell of esophagus;Original_cell_type=epithelial cell of esophagus;Lab=John Stamatoyannopoulos, UW;System=digestive system;ENCODE_BED_id=ENCFF090ZEL;ENCODE_bigBed_id=ENCFF946GGT;PMID=34755879;Motif_sequence=SCTGCAGTKCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002252;is_hg38_lifted=no system_category Digestive life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTR] [TFBS]
CTCF • Neural progenitor cell NGFTBKNZGCHMX7 • Factorbook34755879 Motif finding Neural progenitor cell TFBS Show metadata Download track Track metadata identifier NGFTBKNZGCHMX7 data_source Factorbook Download track Download number_of_intervals 46,394 bp_covered 695,910 output_type transcription factor binding sites all genome_build hg38 cell_type Neural progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0011020 tissue_category Brain encode_experiment_id ENCSR125NBL biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 780,480 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF295FMF_YGGCCASYAGRKGGC_sorted.bed.gz processed_file_md5 d363ccc6f7368cd764e09f44de307c9b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF295FMF_YGGCCASYAGRKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF295FMF_YGGCCASYAGRKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF295FMF_YGGCCASYAGRKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF295FMF_YGGCCASYAGRKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c6c3c8ebc4ca8f19212115271cbdd195 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens neural progenitor cell originated from H9;Original_cell_type=neural progenitor cell;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF295FMF;ENCODE_bigBed_id=ENCFF420RBO;PMID=34755879;Motif_sequence=YGGCCASYAGRKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0011020;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name Factorbook Neural progenitor cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR125NBL] [Life stage: Embryonic] [TFBS]
CTCF • DND-41 NGFTBKP6DJOXNF • Factorbook34755879 Motif finding DND-41 TFBS Show metadata Download track Track metadata identifier NGFTBKP6DJOXNF data_source Factorbook Download track Download number_of_intervals 183 bp_covered 3,111 output_type transcription factor binding sites significant genome_build hg38 cell_type DND-41 biosample_type Cell line biosample_term_id EFO:0007074 tissue_category Blood encode_experiment_id ENCSR000AQU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,660 downloaded_date 07/10/2024 release_date 03/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF388IXL_BRSYGCCMYCTGSTGGC_filtered.bed.gz processed_file_md5 6921a508ac7720b9624867c21b1e2498 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF388IXL_BRSYGCCMYCTGSTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF388IXL_BRSYGCCMYCTGSTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF388IXL_BRSYGCCMYCTGSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF388IXL_BRSYGCCMYCTGSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 649538010e2c81d23d681134005c472b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens DND-41;Original_cell_type=DND-41;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF388IXL;ENCODE_bigBed_id=ENCFF913MRA;PMID=34755879;Motif_sequence=BRSYGCCMYCTGSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007074;is_hg38_lifted=no system_category Cardiovascular life_stage Child track_name Factorbook DND-41 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AQU] [Life stage: Child] [TFBS]
CTCF • Epithelium NGFTBKSO7Z5I24 • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBKSO7Z5I24 data_source Factorbook Download track Download number_of_intervals 30,247 bp_covered 453,705 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id ENCSR697YIN biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 510,153 downloaded_date 07/10/2024 release_date 02/08/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758FTM_SYGCCCYCTGSTGGM_sorted.bed.gz processed_file_md5 44f0f11a4474932244872f924010cc23 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758FTM_SYGCCCYCTGSTGGM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758FTM_SYGCCCYCTGSTGGM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758FTM_SYGCCCYCTGSTGGM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758FTM_SYGCCCYCTGSTGGM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8abd43f83687e195959206d6119330ae data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens breast epithelium tissue male adult (54 years);Original_cell_type=breast epithelium;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF758FTM;ENCODE_bigBed_id=ENCFF341QWO;PMID=34755879;Motif_sequence=SYGCCCYCTGSTGGM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Epithelium (repl. 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR697YIN] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBKTLUQ3JQQ • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBKTLUQ3JQQ data_source Factorbook Download track Download number_of_intervals 40,954 bp_covered 614,310 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 688,687 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_GCCMYCTGSTGGVMR_sorted.bed.gz processed_file_md5 a2c74ced22c0f98a5d579756163e7360 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_GCCMYCTGSTGGVMR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_GCCMYCTGSTGGVMR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF163JHE_GCCMYCTGSTGGVMR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF163JHE_GCCMYCTGSTGGVMR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f1d407823cb3c0b775deb0bd2e2f3b73 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF163JHE;ENCODE_bigBed_id=ENCFF414SZG;PMID=34755879;Motif_sequence=GCCMYCTGSTGGVMR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMV] [Life stage: Adult] [TFBS]
CTCF • Kidney NGFTBKUY6LIOD3 • Factorbook34755879 Motif finding Kidney TFBS Show metadata Download track Track metadata identifier NGFTBKUY6LIOD3 data_source Factorbook Download track Download number_of_intervals 399 bp_covered 5,985 output_type transcription factor binding sites significant genome_build hg38 cell_type Kidney biosample_type Tissue biosample_term_id UBERON:0002113 tissue_category Kidney encode_experiment_id ENCSR000DMC biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,730 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF498EED_GCCMYCTGSTGGCCA_filtered.bed.gz processed_file_md5 59d7cdd28fee7e3dc81b294c91055111 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF498EED_GCCMYCTGSTGGCCA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF498EED_GCCMYCTGSTGGCCA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF498EED_GCCMYCTGSTGGCCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF498EED_GCCMYCTGSTGGCCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6058d6cd050652e844295074344f0478 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens kidney tissue male adult (22 years) and male adult (27 years) and male adult (35 years);Original_cell_type=kidney;Lab=Vishwanath Iyer, UTA;System=excretory system;ENCODE_BED_id=ENCFF498EED;ENCODE_bigBed_id=ENCFF335EKK;PMID=34755879;Motif_sequence=GCCMYCTGSTGGCCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002113;is_hg38_lifted=no system_category Renal life_stage Adult track_name Factorbook Kidney (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMC] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBKUZXGIIKE • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBKUZXGIIKE data_source Factorbook Download track Download number_of_intervals 5,999 bp_covered 89,985 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BHW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 102,066 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF875TRW_CCASTTCTGCCWTYT_sorted.bed.gz processed_file_md5 0de684eed8ad65af96b8a788f9aeff12 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF875TRW_CCASTTCTGCCWTYT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF875TRW_CCASTTCTGCCWTYT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF875TRW_CCASTTCTGCCWTYT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF875TRW_CCASTTCTGCCWTYT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a06676effd56aac270c8c1d2fa40de89 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF875TRW;ENCODE_bigBed_id=ENCFF021BMI;PMID=34755879;Motif_sequence=CCASTTCTGCCWTYT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHW] [Life stage: Adult] [TFBS]
CTCF • AG10803 NGFTBKWA4X5LUA • Factorbook34755879 Motif finding AG10803 TFBS Show metadata Download track Track metadata identifier NGFTBKWA4X5LUA data_source Factorbook Download track Download number_of_intervals 7,013 bp_covered 133,247 output_type transcription factor binding sites all genome_build hg38 cell_type AG10803 biosample_type Cell line biosample_term_id CLO:0021511 tissue_category Skin encode_experiment_id ENCSR000DPV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 134,196 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_GCTGCAGTDCCMMMNNHKG_sorted.bed.gz processed_file_md5 1efa3761d509dcf4d064a9ba449ed00c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_GCTGCAGTDCCMMMNNHKG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_GCTGCAGTDCCMMMNNHKG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF912KWD_GCTGCAGTDCCMMMNNHKG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF912KWD_GCTGCAGTDCCMMMNNHKG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d0eede423a796557e47bbe83ee06249d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG10803;Original_cell_type=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF912KWD;ENCODE_bigBed_id=ENCFF550SXU;PMID=34755879;Motif_sequence=GCTGCAGTDCCMMMNNHKG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021511;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG10803 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPV] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBKXE5MULWE • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBKXE5MULWE data_source Factorbook Download track Download number_of_intervals 14,474 bp_covered 303,954 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Lung encode_experiment_id ENCSR000DXI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 288,534 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734FWK_CMRADGGBGGMACTGCAGCCH_sorted.bed.gz processed_file_md5 6f1c7040e4c0e7b9dd2bd88fda3bce94 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734FWK_CMRADGGBGGMACTGCAGCCH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF734FWK_CMRADGGBGGMACTGCAGCCH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF734FWK_CMRADGGBGGMACTGCAGCCH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF734FWK_CMRADGGBGGMACTGCAGCCH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8f7bf00ad5694225944bef205fe84a99 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens bronchial epithelial cell;Original_cell_type=bronchial epithelial cell;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF734FWK;ENCODE_bigBed_id=ENCFF500SEA;PMID=34755879;Motif_sequence=CMRADGGBGGMACTGCAGCCH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002328;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXI] [TFBS]
CTCF • HCT116 NGFTBKYC6AS6DQ • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBKYC6AS6DQ data_source Factorbook Download track Download number_of_intervals 4,445 bp_covered 133,350 output_type transcription factor binding sites all genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR240PRQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 104,546 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_CTNGCTGGTGCTGTAGTAARYHVYVGTACT_sorted.bed.gz processed_file_md5 72b1f55e41053962e41d29bc038db04c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_CTNGCTGGTGCTGTAGTAARYHVYVGTACT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_CTNGCTGGTGCTGTAGTAARYHVYVGTACT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF803RIY_CTNGCTGGTGCTGTAGTAARYHVYVGTACT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF803RIY_CTNGCTGGTGCTGTAGTAARYHVYVGTACT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 06ef3c2b40d2d286317388dd7e940de6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=Bradley Bernstein, Broad;System=digestive system;ENCODE_BED_id=ENCFF803RIY;ENCODE_bigBed_id=ENCFF402LTB;PMID=34755879;Motif_sequence=CTNGCTGGTGCTGTAGTAARYHVYVGTACT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR240PRQ] [Life stage: Adult] [TFBS]