CTCF • A549 NGFTBM2O6JOJ3B • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBM2O6JOJ3B data_source Factorbook Download track Download number_of_intervals 44,937 bp_covered 898,740 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR173IEA biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 786,061 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF069WWV_BBTGGCCASYAGRGGGCRCY_sorted.bed.gz processed_file_md5 8c62f418a043631bf8ad47717078a76e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF069WWV_BBTGGCCASYAGRGGGCRCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF069WWV_BBTGGCCASYAGRGGGCRCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF069WWV_BBTGGCCASYAGRGGGCRCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF069WWV_BBTGGCCASYAGRGGGCRCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c9ffe4f47e549014b1be42a5a7952fe6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF069WWV;ENCODE_bigBed_id=ENCFF796EIA;PMID=34755879;Motif_sequence=BBTGGCCASYAGRGGGCRCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR173IEA] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBM2TREGN2R • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBM2TREGN2R data_source Factorbook Download track Download number_of_intervals 8,919 bp_covered 98,109 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Eye encode_experiment_id ENCSR000DVI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 121,567 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_TGCTCTCTGCT_sorted.bed.gz processed_file_md5 5057eb265317f2ce6feeb02ca6acbe53 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_TGCTCTCTGCT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF513ZBA_TGCTCTCTGCT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF513ZBA_TGCTCTCTGCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF513ZBA_TGCTCTCTGCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ec8d10cd303c15e8b65440325fd8b836 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens retinal pigment epithelial cell;Original_cell_type=retinal pigment epithelial cell;Lab=John Stamatoyannopoulos, UW;System=sensory system;ENCODE_BED_id=ENCFF513ZBA;ENCODE_bigBed_id=ENCFF381TYM;PMID=34755879;Motif_sequence=TGCTCTCTGCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002586;is_hg38_lifted=no system_category Sensory life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVI] [TFBS]
CTCF • Smooth muscle cell NGFTBM33LJR52B • Factorbook34755879 Motif finding Smooth muscle cell TFBS Show metadata Download track Track metadata identifier NGFTBM33LJR52B data_source Factorbook Download track Download number_of_intervals 48,657 bp_covered 875,826 output_type transcription factor binding sites all genome_build hg38 cell_type Smooth muscle cell biosample_type In vitro differentiated cells biosample_term_id CL:0000192 tissue_category Muscle encode_experiment_id ENCSR261VAS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 884,628 downloaded_date 07/10/2024 release_date 12/03/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF132BFT_GCCASCAGRGGGCGCYVB_sorted.bed.gz processed_file_md5 883b6c2b8169dde1b579665276e167a4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF132BFT_GCCASCAGRGGGCGCYVB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF132BFT_GCCASCAGRGGGCGCYVB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF132BFT_GCCASCAGRGGGCGCYVB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF132BFT_GCCASCAGRGGGCGCYVB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c5817a62d3122b48ee6fdcc0f08c082f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens smooth muscle cell originated from H9;Original_cell_type=smooth muscle cell;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF132BFT;ENCODE_bigBed_id=ENCFF656FBT;PMID=34755879;Motif_sequence=GCCASCAGRGGGCGCYVB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000192;is_hg38_lifted=no system_category Muscular life_stage Embryonic track_name Factorbook Smooth muscle cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR261VAS] [Life stage: Embryonic] [TFBS]
CTCF • Lung NGFTBM3OGFWZ7S • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTBM3OGFWZ7S data_source Factorbook Download track Download number_of_intervals 41,235 bp_covered 618,525 output_type transcription factor binding sites all genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR964BKO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 697,786 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061UVF_GGCCRSCAGGGGGCG_sorted.bed.gz processed_file_md5 4305f7394209926c829f81d0dbf53fc2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061UVF_GGCCRSCAGGGGGCG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061UVF_GGCCRSCAGGGGGCG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF061UVF_GGCCRSCAGGGGGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF061UVF_GGCCRSCAGGGGGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fe97a1f88b0cde0e69c304157f91030b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens upper lobe of left lung tissue male adult (54 years);Original_cell_type=upper lobe of left lung;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF061UVF;ENCODE_bigBed_id=ENCFF374MAK;PMID=34755879;Motif_sequence=GGCCRSCAGGGGGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008952;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR964BKO] [Life stage: Adult] [TFBS]
CTCF • Ishikawa NGFTBM4XRP6PTS • Factorbook34755879 Motif finding Ishikawa TFBS Show metadata Download track Track metadata identifier NGFTBM4XRP6PTS data_source Factorbook Download track Download number_of_intervals 193 bp_covered 2,895 output_type transcription factor binding sites significant genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BQE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,335 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF809WKH_RGYGCCMYCTRSTGG_filtered.bed.gz processed_file_md5 41794e0c16e9f5ce5bad82a3e5530ed7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF809WKH_RGYGCCMYCTRSTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF809WKH_RGYGCCMYCTRSTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF809WKH_RGYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF809WKH_RGYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c4ef8a42bd4ac6c813f01a2575a8516a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=Ishikawa;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF809WKH;ENCODE_bigBed_id=ENCFF516BSM;PMID=34755879;Motif_sequence=RGYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Ishikawa (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BQE] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTBM4XV4Q6PV • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBM4XV4Q6PV data_source Factorbook Download track Download number_of_intervals 42,712 bp_covered 640,680 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Blood Vessel encode_experiment_id ENCSR000DPY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 718,577 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_CCASYAGRKGGCRSY_sorted.bed.gz processed_file_md5 4178013de5ab8d17f1fe9c0f3d11c851 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_CCASYAGRKGGCRSY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF552LAX_CCASYAGRKGGCRSY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF552LAX_CCASYAGRKGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF552LAX_CCASYAGRKGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8ae66a214889eb019db50b3d8bef047d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of the aortic adventitia female;Original_cell_type=fibroblast of the aortic adventitia;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF552LAX;ENCODE_bigBed_id=ENCFF639DMR;PMID=34755879;Motif_sequence=CCASYAGRKGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002547;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPY] [TFBS]
CTCF • Spleen NGFTBM5GROIQBX • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBM5GROIQBX data_source Factorbook Download track Download number_of_intervals 30,296 bp_covered 636,216 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR482PMN biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 596,210 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_WSBRSCGCCMCCTRSYGGCCR_sorted.bed.gz processed_file_md5 944207f9e3b002440b08f464e8fa9d42 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_WSBRSCGCCMCCTRSYGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_WSBRSCGCCMCCTRSYGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF047BEO_WSBRSCGCCMCCTRSYGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF047BEO_WSBRSCGCCMCCTRSYGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 121cc7ccc7350284fc360b99c079acce data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue female adult (51 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF047BEO;ENCODE_bigBed_id=ENCFF077XIZ;PMID=34755879;Motif_sequence=WSBRSCGCCMCCTRSYGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR482PMN] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTBMBFLNDEOE • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBMBFLNDEOE data_source Factorbook Download track Download number_of_intervals 5,396 bp_covered 80,940 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR482PMN biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 89,849 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_RRDDGNRGAACTGCA_sorted.bed.gz processed_file_md5 c64bc25a1c60d21ae20e2648ddb84913 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_RRDDGNRGAACTGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF047BEO_RRDDGNRGAACTGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF047BEO_RRDDGNRGAACTGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF047BEO_RRDDGNRGAACTGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 61d8818faabfcd45f1efa9c1942b11b6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue female adult (51 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF047BEO;ENCODE_bigBed_id=ENCFF077XIZ;PMID=34755879;Motif_sequence=RRDDGNRGAACTGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR482PMN] [Life stage: Adult] [TFBS]
CTCF • AG04450 NGFTBMBO74QC7G • Factorbook34755879 Motif finding AG04450 TFBS Show metadata Download track Track metadata identifier NGFTBMBO74QC7G data_source Factorbook Download track Download number_of_intervals 38,495 bp_covered 577,425 output_type transcription factor binding sites all genome_build hg38 cell_type AG04450 biosample_type Cell line biosample_term_id EFO:0006270 tissue_category Lung encode_experiment_id ENCSR000DPM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 672,471 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_GCCACYAGRGGGCRC_sorted.bed.gz processed_file_md5 8703036d06e5b504b3c3bfab6c333628 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_GCCACYAGRGGGCRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_GCCACYAGRGGGCRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF873FBD_GCCACYAGRGGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF873FBD_GCCACYAGRGGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d40936e7047e70ce81ceced7d271a5a3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG04450;Original_cell_type=AG04450;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF873FBD;ENCODE_bigBed_id=ENCFF116DJL;PMID=34755879;Motif_sequence=GCCACYAGRGGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006270;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name Factorbook AG04450 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPM] [Life stage: Embryonic] [TFBS]
CTCF • GM12872 NGFTBMBRNNY6LS • Factorbook34755879 Motif finding GM12872 TFBS Show metadata Download track Track metadata identifier NGFTBMBRNNY6LS data_source Factorbook Download track Download number_of_intervals 43,412 bp_covered 607,768 output_type transcription factor binding sites all genome_build hg38 cell_type GM12872 biosample_type Cell line biosample_term_id EFO:0001159 tissue_category Blood encode_experiment_id ENCSR000DRN biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 727,219 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542FXV_YGCCCYCTRGTGGC_sorted.bed.gz processed_file_md5 079c1595206a77da04975893b5949322 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542FXV_YGCCCYCTRGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542FXV_YGCCCYCTRGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF542FXV_YGCCCYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF542FXV_YGCCCYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3933617011ac3ec9a2d6b72e38a7b9ee data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12872;Original_cell_type=GM12872;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF542FXV;ENCODE_bigBed_id=ENCFF622AZZ;PMID=34755879;Motif_sequence=YGCCCYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001159;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12872 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRN] [TFBS]
CTCF • Adrenal gland NGFTBMDBBYFRMO • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBMDBBYFRMO data_source Factorbook Download track Download number_of_intervals 4,454 bp_covered 66,810 output_type transcription factor binding sites all genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR770IWO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 76,304 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_AHNBKSRGAAYTGCA_sorted.bed.gz processed_file_md5 b85f20e6f2207513e9905b2f7c97d90f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_AHNBKSRGAAYTGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_AHNBKSRGAAYTGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SOE_AHNBKSRGAAYTGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SOE_AHNBKSRGAAYTGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a18646b8bda8e35ca0442562b8b16ba5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (53 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF059SOE;ENCODE_bigBed_id=ENCFF678WUB;PMID=34755879;Motif_sequence=AHNBKSRGAAYTGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR770IWO] [Life stage: Adult] [TFBS]
CTCF • Peyers patch NGFTBMDK775YOH • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBMDK775YOH data_source Factorbook Download track Download number_of_intervals 28,360 bp_covered 850,800 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR799WDT biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 672,776 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC_sorted.bed.gz processed_file_md5 debc920da41f6b96b8e88b5f41916c13 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8f10b366d13af1d218f768fb3a8cfa87 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (54 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF320DPI;ENCODE_bigBed_id=ENCFF828IDE;PMID=34755879;Motif_sequence=CCMCCTRGTGGCYANDNNDGGAAYTGCASC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR799WDT] [Life stage: Adult] [TFBS]
CTCF • AG09309 NGFTBMECOLKR3P • Factorbook34755879 Motif finding AG09309 TFBS Show metadata Download track Track metadata identifier NGFTBMECOLKR3P data_source Factorbook Download track Download number_of_intervals 263 bp_covered 3,945 output_type transcription factor binding sites significant genome_build hg38 cell_type AG09309 biosample_type Cell line biosample_term_id CLO:0021752 tissue_category Skin encode_experiment_id ENCSR000DPP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,991 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF693KJZ_GCGCCCYCTRSTGGC_filtered.bed.gz processed_file_md5 769ad0491cebd512d049934655107d55 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF693KJZ_GCGCCCYCTRSTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF693KJZ_GCGCCCYCTRSTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693KJZ_GCGCCCYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693KJZ_GCGCCCYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dd5611fc7917a43735e7a0de8bd4f984 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG09309;Original_cell_type=AG09309;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF693KJZ;ENCODE_bigBed_id=ENCFF478XPS;PMID=34755879;Motif_sequence=GCGCCCYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021752;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG09309 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPP] [Life stage: Adult] [TFBS]
CTCF • Skin NGFTBMG7JPSEXZ • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTBMG7JPSEXZ data_source Factorbook Download track Download number_of_intervals 14,066 bp_covered 210,990 output_type transcription factor binding sites all genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR252XWG biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 243,117 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292NVM_GCCACCAGRKGGCRS_sorted.bed.gz processed_file_md5 92239193cd686aced19ec690ce48fb49 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292NVM_GCCACCAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292NVM_GCCACCAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF292NVM_GCCACCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF292NVM_GCCACCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d184c5eadf9d07267bc1b4a0e4210653 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens lower leg skin tissue male adult (54 years);Original_cell_type=lower leg skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF292NVM;ENCODE_bigBed_id=ENCFF055ALO;PMID=34755879;Motif_sequence=GCCACCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004264;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR252XWG] [Life stage: Adult] [TFBS]
CTCF • HeLa-S3 NGFTBMGXRQ3RKK • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBMGXRQ3RKK data_source Factorbook Download track Download number_of_intervals 16,587 bp_covered 132,696 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000AOA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 161,819 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF111RWV_CWGCWSWG_sorted.bed.gz processed_file_md5 7a136f3627b3dfea32fc769ab3268482 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF111RWV_CWGCWSWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF111RWV_CWGCWSWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF111RWV_CWGCWSWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF111RWV_CWGCWSWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1e85e8c8723b72c167116c11e01a8701 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Bradley Bernstein, Broad;System=reproductive system;ENCODE_BED_id=ENCFF111RWV;ENCODE_bigBed_id=ENCFF255ASZ;PMID=34755879;Motif_sequence=CWGCWSWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AOA] [Life stage: Adult] [TFBS]
CTCF • Panc1 NGFTBMHNO7TMO2 • Factorbook34755879 Motif finding Panc1 TFBS Show metadata Download track Track metadata identifier NGFTBMHNO7TMO2 data_source Factorbook Download track Download number_of_intervals 52,162 bp_covered 782,430 output_type transcription factor binding sites all genome_build hg38 cell_type Panc1 biosample_type Cell line biosample_term_id EFO:0002713 tissue_category Pancreas encode_experiment_id ENCSR203QEB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 595,766 downloaded_date 07/10/2024 release_date 07/21/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF504IUB_GCCRSCAGGGGGCGC_sorted.bed.gz processed_file_md5 ec117c0db3b6e72f886b777e6d50bce4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF504IUB_GCCRSCAGGGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF504IUB_GCCRSCAGGGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF504IUB_GCCRSCAGGGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF504IUB_GCCRSCAGGGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4748d504f6cd62e001d9fbc61200e8e0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Panc1;Original_cell_type=Panc1;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF504IUB;ENCODE_bigBed_id=ENCFF056JQX;PMID=34755879;Motif_sequence=GCCRSCAGGGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002713;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Panc1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR203QEB] [Life stage: Adult] [TFBS]
CTCF • LNCaP clone FGC NGFTBMIYAC5QTB • Factorbook34755879 Motif finding LNCaP clone FGC TFBS Show metadata Download track Track metadata identifier NGFTBMIYAC5QTB data_source Factorbook Download track Download number_of_intervals 219 bp_covered 3,285 output_type transcription factor binding sites significant genome_build hg38 cell_type LNCaP clone FGC biosample_type Cell line biosample_term_id EFO:0005726 tissue_category Male Reproductive encode_experiment_id ENCSR000DMF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,610 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF596RKE_GCCASCAGRKGGCRS_filtered.bed.gz processed_file_md5 9c3799e8e90b83c1600139e0173ea053 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF596RKE_GCCASCAGRKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF596RKE_GCCASCAGRKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF596RKE_GCCASCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF596RKE_GCCASCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6860ec05a264a5abed1005cca11681b6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCaP clone FGC;Original_cell_type=LNCaP clone FGC;Lab=Vishwanath Iyer, UTA;System=reproductive system;ENCODE_BED_id=ENCFF596RKE;ENCODE_bigBed_id=ENCFF519YVI;PMID=34755879;Motif_sequence=GCCASCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005726;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCaP clone FGC (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMF] [Life stage: Adult] [TFBS]
CTCF • Pancreas NGFTBMKNLU5TQX • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTBMKNLU5TQX data_source Factorbook Download track Download number_of_intervals 148 bp_covered 3,996 output_type transcription factor binding sites significant genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR484DDO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,368 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS_filtered.bed.gz processed_file_md5 825f8fe9591b2d171261f71cddbbcddc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF061ZXI_CCMYCTRGTGGYCABWNVKGGNANBRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7a41f7b5993f79d9fdd29c398c4de65d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens body of pancreas tissue female adult (53 years);Original_cell_type=body of pancreas;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF061ZXI;ENCODE_bigBed_id=ENCFF881RGF;PMID=34755879;Motif_sequence=CCMYCTRGTGGYCABWNVKGGNANBRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001150;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR484DDO] [Life stage: Adult] [TFBS]
CTCF • AG10803 NGFTBMKOYDVZN2 • Factorbook34755879 Motif finding AG10803 TFBS Show metadata Download track Track metadata identifier NGFTBMKOYDVZN2 data_source Factorbook Download track Download number_of_intervals 36,961 bp_covered 554,415 output_type transcription factor binding sites all genome_build hg38 cell_type AG10803 biosample_type Cell line biosample_term_id CLO:0021511 tissue_category Skin encode_experiment_id ENCSR000DPV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 619,446 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_RSYGCCMYCTRSTGG_sorted.bed.gz processed_file_md5 7b82bdb28b7fb19ff285301ff604fd69 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_RSYGCCMYCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_RSYGCCMYCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF912KWD_RSYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF912KWD_RSYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3f0e39cc4f919119cd891879d8bd45c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG10803;Original_cell_type=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF912KWD;ENCODE_bigBed_id=ENCFF550SXU;PMID=34755879;Motif_sequence=RSYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021511;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG10803 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPV] [Life stage: Adult] [TFBS]
CTCF • H1-hESC NGFTBMLMQYBLPB • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBMLMQYBLPB data_source Factorbook Download track Download number_of_intervals 57,327 bp_covered 859,905 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AMF biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 997,259 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF692RPA_RCCASYAGRGGGCGC_sorted.bed.gz processed_file_md5 d2c1e6496fe11e6aad256bb6ca592691 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF692RPA_RCCASYAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF692RPA_RCCASYAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF692RPA_RCCASYAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF692RPA_RCCASYAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 592e1c1c0fbf0d0490187f4761a55833 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Bradley Bernstein, Broad;System=NR;ENCODE_BED_id=ENCFF692RPA;ENCODE_bigBed_id=ENCFF764RHO;PMID=34755879;Motif_sequence=RCCASYAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AMF] [TFBS]