CTCF • Fibroblast NGFTBPOHU33IFL • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBPOHU33IFL data_source Factorbook Download track Download number_of_intervals 6,850 bp_covered 54,800 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000DVA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 75,295 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF087ZSQ_CAGCCTKG_sorted.bed.gz processed_file_md5 fdf983feec4265b0a21df7532ac584e7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF087ZSQ_CAGCCTKG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF087ZSQ_CAGCCTKG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF087ZSQ_CAGCCTKG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF087ZSQ_CAGCCTKG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fb7b9f79cbf7b58a622032aa55c6e994 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of lung;Original_cell_type=fibroblast of lung;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF087ZSQ;ENCODE_bigBed_id=ENCFF755SEH;PMID=34755879;Motif_sequence=CAGCCTKG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVA] [TFBS]
CTCF • GM12878 NGFTBPORIGSWBN • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBPORIGSWBN data_source Factorbook Download track Download number_of_intervals 8,019 bp_covered 88,209 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DRZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 115,001 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_GGAACTGCAGS_sorted.bed.gz processed_file_md5 15dfe457a06287e93544f6a4b40d3b7e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF951PEM_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF951PEM_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF951PEM_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6766cbe1252bdb6a28a4bdd9ae9469c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF951PEM;ENCODE_bigBed_id=ENCFF485TGR;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRZ] [TFBS]
CTCF • Testis NGFTBPOY6XDUXO • Factorbook34755879 Motif finding Testis TFBS Show metadata Download track Track metadata identifier NGFTBPOY6XDUXO data_source Factorbook Download track Download number_of_intervals 28,872 bp_covered 433,080 output_type transcription factor binding sites all genome_build hg38 cell_type Testis biosample_type Tissue biosample_term_id UBERON:0000473 tissue_category Male Reproductive encode_experiment_id ENCSR494TNM biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 495,016 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF387GJA_GCGCCCCCTGGTGGC_sorted.bed.gz processed_file_md5 1907b86e417cfdc76abb2bb208a45f4f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF387GJA_GCGCCCCCTGGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF387GJA_GCGCCCCCTGGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF387GJA_GCGCCCCCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF387GJA_GCGCCCCCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f98e770fa6c690112c6bcac31196bf87 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens testis tissue male adult (37 years);Original_cell_type=testis;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF387GJA;ENCODE_bigBed_id=ENCFF128XQJ;PMID=34755879;Motif_sequence=GCGCCCCCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000473;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Testis (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR494TNM] [Life stage: Adult] [TFBS]
CTCF • GM12874 NGFTBPR2KYZYDA • Factorbook34755879 Motif finding GM12874 TFBS Show metadata Download track Track metadata identifier NGFTBPR2KYZYDA data_source Factorbook Download track Download number_of_intervals 14,525 bp_covered 305,025 output_type transcription factor binding sites all genome_build hg38 cell_type GM12874 biosample_type Cell line biosample_term_id EFO:0001161 tissue_category Blood encode_experiment_id ENCSR000DRR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 291,926 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA_sorted.bed.gz processed_file_md5 302641477a72d5e7293c1ceac78554ef wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF910AWG_WHTSACCRHYAGRKGGCAGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 59e9ee265882b04feda65cfacbb2efa6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12874;Original_cell_type=GM12874;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF910AWG;ENCODE_bigBed_id=ENCFF942MTD;PMID=34755879;Motif_sequence=WHTSACCRHYAGRKGGCAGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001161;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12874 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRR] [TFBS]
CTCF • Peyers patch NGFTBPRCLTFNOO • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBPRCLTFNOO data_source Factorbook Download track Download number_of_intervals 3 bp_covered 84 output_type transcription factor binding sites significant genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR375VXU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 434 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA_filtered.bed.gz processed_file_md5 176702007107364b25019e677e065fb2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF013GUN_TGYTKYCHCCTRGTGGHBARWDYTKDAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bafa00affefe4717c6dc5f8d3a9128cb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue female adult (53 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF013GUN;ENCODE_bigBed_id=ENCFF746TCR;PMID=34755879;Motif_sequence=TGYTKYCHCCTRGTGGHBARWDYTKDAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR375VXU] [Life stage: Adult] [TFBS]
CTCF • K562 NGFTBPSCDB2HPS • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBPSCDB2HPS data_source Factorbook Download track Download number_of_intervals 404 bp_covered 7,272 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000AKO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,398 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF362OPG_VBRGYGCCCCCTGSTGGC_filtered.bed.gz processed_file_md5 4304684551b0eb304043c703f83c5e46 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF362OPG_VBRGYGCCCCCTGSTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF362OPG_VBRGYGCCCCCTGSTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF362OPG_VBRGYGCCCCCTGSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF362OPG_VBRGYGCCCCCTGSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 49925b358b0b8411d489aa3440f8c82e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF362OPG;ENCODE_bigBed_id=ENCFF095JYT;PMID=34755879;Motif_sequence=VBRGYGCCCCCTGSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKO] [Life stage: Adult] [TFBS]
CTCF • Prostate gland NGFTBPSJYHP3QN • Factorbook34755879 Motif finding Prostate gland TFBS Show metadata Download track Track metadata identifier NGFTBPSJYHP3QN data_source Factorbook Download track Download number_of_intervals 10,639 bp_covered 117,029 output_type transcription factor binding sites all genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR720USO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 154,129 downloaded_date 07/10/2024 release_date 11/29/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF351NKT_SGGRACTGCAG_sorted.bed.gz processed_file_md5 80389b6a941f65d746863bd7df6bb0b9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF351NKT_SGGRACTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF351NKT_SGGRACTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF351NKT_SGGRACTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF351NKT_SGGRACTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2dddf8d952bfcb8bfa0fe906990a9bf5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens prostate gland tissue male adult (37 years);Original_cell_type=prostate gland;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF351NKT;ENCODE_bigBed_id=ENCFF979KAF;PMID=34755879;Motif_sequence=SGGRACTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Prostate gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR720USO] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBPSQSJHIWF • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBPSQSJHIWF data_source Factorbook Download track Download number_of_intervals 8,065 bp_covered 120,975 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 136,871 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_MDBBCWKRRCTGCAG_sorted.bed.gz processed_file_md5 633e17b504e2c3c8b690d2bd1c34c03c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_MDBBCWKRRCTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF198YOJ_MDBBCWKRRCTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF198YOJ_MDBBCWKRRCTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF198YOJ_MDBBCWKRRCTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ff1d2bc8d4ebb99a10393bc1d7c2497a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF198YOJ;ENCODE_bigBed_id=ENCFF844STM;PMID=34755879;Motif_sequence=MDBBCWKRRCTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMO] [Life stage: Adult] [TFBS]
CTCF • Left ventricle NGFTBPUNIHUXV7 • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTBPUNIHUXV7 data_source Factorbook Download track Download number_of_intervals 13,195 bp_covered 184,730 output_type transcription factor binding sites all genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR544APK biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 207,424 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_KSCTGCARTTCCSC_sorted.bed.gz processed_file_md5 c269eb1008b7ac338574304eb2b9a84a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_KSCTGCARTTCCSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF165RCX_KSCTGCARTTCCSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165RCX_KSCTGCARTTCCSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165RCX_KSCTGCARTTCCSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ed8d78d3e7eece02a663df2278eb8e60 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (53 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF165RCX;ENCODE_bigBed_id=ENCFF185CKY;PMID=34755879;Motif_sequence=KSCTGCARTTCCSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR544APK] [Life stage: Adult] [TFBS]
CTCF • Astrocyte NGFTBPWCKJ4FK3 • Factorbook34755879 Motif finding Astrocyte TFBS Show metadata Download track Track metadata identifier NGFTBPWCKJ4FK3 data_source Factorbook Download track Download number_of_intervals 8,521 bp_covered 153,378 output_type transcription factor binding sites all genome_build hg38 cell_type Astrocyte biosample_type Primary cell biosample_term_id CL:0000127 tissue_category Brain encode_experiment_id ENCSR000DSZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 158,756 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF674KSP_ANNDKKGGHACTGCAGSC_sorted.bed.gz processed_file_md5 192533e5ef93a96d2bf593526bde8d9d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF674KSP_ANNDKKGGHACTGCAGSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF674KSP_ANNDKKGGHACTGCAGSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF674KSP_ANNDKKGGHACTGCAGSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF674KSP_ANNDKKGGHACTGCAGSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2876a62df9ac930df146ab87b1c0a3a6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens astrocyte of the cerebellum;Original_cell_type=astrocyte of the cerebellum;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF674KSP;ENCODE_bigBed_id=ENCFF511OCS;PMID=34755879;Motif_sequence=ANNDKKGGHACTGCAGSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002603;is_hg38_lifted=no system_category Nervous life_stage Unknown track_name Factorbook Astrocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DSZ] [TFBS]
CTCF • HepG2 NGFTBPX2T4PP5U • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBPX2T4PP5U data_source Factorbook Download track Download number_of_intervals 12,341 bp_covered 135,751 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000AMA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 170,837 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF205OKL_DGGVACWGCAG_sorted.bed.gz processed_file_md5 ea5e4e0f8cdcae0fac30a4552c1d8b52 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF205OKL_DGGVACWGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF205OKL_DGGVACWGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF205OKL_DGGVACWGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF205OKL_DGGVACWGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 98fc8cf3ab17de49594f24f21b129a07 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Bradley Bernstein, Broad;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF205OKL;ENCODE_bigBed_id=ENCFF194VBQ;PMID=34755879;Motif_sequence=DGGVACWGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AMA] [Life stage: Child] [TFBS]
CTCF • T47D NGFTBPXBXELAPS • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTBPXBXELAPS data_source Factorbook Download track Download number_of_intervals 32,902 bp_covered 493,530 output_type transcription factor binding sites all genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BNO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 567,831 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_YGCCCYCTRSTGGCM_sorted.bed.gz processed_file_md5 66742a14b44a0efd481f5c75859ff4c1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_YGCCCYCTRSTGGCM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_YGCCCYCTRSTGGCM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF524DPR_YGCCCYCTRSTGGCM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF524DPR_YGCCCYCTRSTGGCM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8a49fcb4ceb5bb50cb6214da82a92278 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF524DPR;ENCODE_bigBed_id=ENCFF063ZXA;PMID=34755879;Motif_sequence=YGCCCYCTRSTGGCM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNO] [Life stage: Adult] [TFBS]
CTCF • Tibial nerve NGFTBPXVU5MDDA • Factorbook34755879 Motif finding Tibial nerve TFBS Show metadata Download track Track metadata identifier NGFTBPXVU5MDDA data_source Factorbook Download track Download number_of_intervals 1,322 bp_covered 27,762 output_type transcription factor binding sites significant genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR822PJT biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,316 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF302VBR_BYGGCCRSCAGGGGGCGCYVB_filtered.bed.gz processed_file_md5 405aac5002f536089455d7dcc998ed43 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF302VBR_BYGGCCRSCAGGGGGCGCYVB_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF302VBR_BYGGCCRSCAGGGGGCGCYVB_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF302VBR_BYGGCCRSCAGGGGGCGCYVB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF302VBR_BYGGCCRSCAGGGGGCGCYVB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 028ec13de7baba3e2e1851a92fd3c58a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens tibial nerve tissue female adult (51 years);Original_cell_type=tibial nerve;Lab=Michael Snyder, Stanford;System=peripheral nervous system;ENCODE_BED_id=ENCFF302VBR;ENCODE_bigBed_id=ENCFF665IWH;PMID=34755879;Motif_sequence=BYGGCCRSCAGGGGGCGCYVB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Tibial nerve (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR822PJT] [Life stage: Adult] [TFBS]
CTCF • Thyroid gland NGFTBPZ4X4CRZY • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBPZ4X4CRZY data_source Factorbook Download track Download number_of_intervals 9,789 bp_covered 107,679 output_type transcription factor binding sites all genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR955BIB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 136,979 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CTGCAGTTCCM_sorted.bed.gz processed_file_md5 7ee7cc920e93f038a0652ea71378ea19 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CTGCAGTTCCM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CTGCAGTTCCM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF728ZGC_CTGCAGTTCCM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF728ZGC_CTGCAGTTCCM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 58992dbf27e93448c9dbd66d08b0b228 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue female adult (51 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF728ZGC;ENCODE_bigBed_id=ENCFF204HWS;PMID=34755879;Motif_sequence=CTGCAGTTCCM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR955BIB] [Life stage: Adult] [TFBS]
CTCF • KMS-11 NGFTBPZXU2GVGF • Factorbook34755879 Motif finding KMS-11 TFBS Show metadata Download track Track metadata identifier NGFTBPZXU2GVGF data_source Factorbook Download track Download number_of_intervals 65,277 bp_covered 1,109,709 output_type transcription factor binding sites all genome_build hg38 cell_type KMS-11 biosample_type Cell line biosample_term_id EFO:0005694 tissue_category Immune encode_experiment_id ENCSR430YRJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 875,771 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF550FBN_YGRCCACYAGRKGGCRS_sorted.bed.gz processed_file_md5 5ce32e4e112aa00f5f9c34a01382b6d1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF550FBN_YGRCCACYAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF550FBN_YGRCCACYAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF550FBN_YGRCCACYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF550FBN_YGRCCACYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a74837829b46ab5de4619b024edce968 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens KMS-11;Original_cell_type=KMS-11;Lab=Bradley Bernstein, Broad;System=skeletal system;ENCODE_BED_id=ENCFF550FBN;ENCODE_bigBed_id=ENCFF884OXW;PMID=34755879;Motif_sequence=YGRCCACYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005694;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook KMS-11 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR430YRJ] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTBQ2I2PLQ2F • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBQ2I2PLQ2F data_source Factorbook Download track Download number_of_intervals 45,046 bp_covered 1,306,334 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AKB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,038,586 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR_sorted.bed.gz processed_file_md5 e3130680f5ea4728d644dd4793aea525 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF797SDL_BHVNKNCCCNNDBBGGCCASHAGRKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f177ae6929d2575166f9321e78fdaf6f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF797SDL;ENCODE_bigBed_id=ENCFF217EAX;PMID=34755879;Motif_sequence=BHVNKNCCCNNDBBGGCCASHAGRKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKB] [TFBS]
CTCF • SK-N-SH NGFTBQ3FGZP4PU • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBQ3FGZP4PU data_source Factorbook Download track Download number_of_intervals 742 bp_covered 14,098 output_type transcription factor binding sites significant genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000BLX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 12,000 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF960CKY_NVBRGYGCCMCCTRSTGGC_filtered.bed.gz processed_file_md5 81bb74b4d3e843b58dd8053affbbfd70 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF960CKY_NVBRGYGCCMCCTRSTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF960CKY_NVBRGYGCCMCCTRSTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF960CKY_NVBRGYGCCMCCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF960CKY_NVBRGYGCCMCCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 00000aa6d3a56e691091c3857a07c1b7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Original_cell_type=SK-N-SH;Lab=Richard Myers, HAIB;System=central nervous system;ENCODE_BED_id=ENCFF960CKY;ENCODE_bigBed_id=ENCFF471ZCF;PMID=34755879;Motif_sequence=NVBRGYGCCMCCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BLX] [Life stage: Child] [TFBS]
CTCF • Parathyroid adenoma NGFTBQ3NTKUKT5 • Factorbook34755879 Motif finding Parathyroid adenoma TFBS Show metadata Download track Track metadata identifier NGFTBQ3NTKUKT5 data_source Factorbook Download track Download number_of_intervals 8,046 bp_covered 88,506 output_type transcription factor binding sites all genome_build hg38 cell_type Parathyroid adenoma biosample_type Tissue biosample_term_id Not available tissue_category Endocrine encode_experiment_id ENCSR336PTS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 112,088 downloaded_date 07/10/2024 release_date 12/08/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF406EOR_SCTGCAGTTCC_sorted.bed.gz processed_file_md5 8c9d4f6519f05fbd8af8e072dd0708a4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF406EOR_SCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF406EOR_SCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF406EOR_SCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF406EOR_SCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f656bb0043e2e035c12dc43e22dccd7c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens parathyroid adenoma tissue male adult (65 years);Original_cell_type=parathyroid adenoma;Lab=Bradley Bernstein, Broad;System=endocrine system;ENCODE_BED_id=ENCFF406EOR;ENCODE_bigBed_id=ENCFF173NJK;PMID=34755879;Motif_sequence=SCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=NTR:0001226;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Parathyroid adenoma (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR336PTS] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTBQ3VA6GCBW • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBQ3VA6GCBW data_source Factorbook Download track Download number_of_intervals 44,413 bp_covered 666,195 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Heart encode_experiment_id ENCSR000DTF biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 772,048 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF376DLT_SYGCCCYCTRSTGGC_sorted.bed.gz processed_file_md5 11089e50cdc48f8ff16c0afc41a4707d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF376DLT_SYGCCCYCTRSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF376DLT_SYGCCCYCTRSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF376DLT_SYGCCCYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF376DLT_SYGCCCYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 326d782c608d1d1051c2a706705887e5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac fibroblast female adult;Original_cell_type=cardiac fibroblast;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF376DLT;ENCODE_bigBed_id=ENCFF326EDY;PMID=34755879;Motif_sequence=SYGCCCYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002548;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTF] [TFBS]
CTCF • Thyroid gland NGFTBQ46HGSJCI • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBQ46HGSJCI data_source Factorbook Download track Download number_of_intervals 3 bp_covered 81 output_type transcription factor binding sites significant genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR955BIB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 431 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW_filtered.bed.gz processed_file_md5 9f0c0fee02f179b46ca6f9f64cde0a9e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 43e66c3150723f0668f10599910278da data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue female adult (51 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF728ZGC;ENCODE_bigBed_id=ENCFF204HWS;PMID=34755879;Motif_sequence=CACCTRGTGGCYAVTTHBGGAAKHRCW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR955BIB] [Life stage: Adult] [TFBS]