CTCF • Fibroblast NGFTBQ5B2RVXFR • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBQ5B2RVXFR data_source Factorbook Download track Download number_of_intervals 124 bp_covered 1,860 output_type transcription factor binding sites significant genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Lung encode_experiment_id ENCSR000DVA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,616 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF087ZSQ_SYGCCMYCTRSTGGY_filtered.bed.gz processed_file_md5 66859fa9bb74a5717a7af05824da2b69 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF087ZSQ_SYGCCMYCTRSTGGY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF087ZSQ_SYGCCMYCTRSTGGY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF087ZSQ_SYGCCMYCTRSTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF087ZSQ_SYGCCMYCTRSTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 308fe515019abfa2086374a33c2b3e3d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of lung;Original_cell_type=fibroblast of lung;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF087ZSQ;ENCODE_bigBed_id=ENCFF755SEH;PMID=34755879;Motif_sequence=SYGCCMYCTRSTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002553;is_hg38_lifted=no system_category Respiratory life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVA] [TFBS]
CTCF • Cardiac muscle cell NGFTBQ5HGYTOIY • Factorbook34755879 Motif finding Cardiac muscle cell TFBS Show metadata Download track Track metadata identifier NGFTBQ5HGYTOIY data_source Factorbook Download track Download number_of_intervals 10,158 bp_covered 193,002 output_type transcription factor binding sites all genome_build hg38 cell_type Cardiac muscle cell biosample_type Primary cell biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id ENCSR000DTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 190,071 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_GSCTGCAGTKCCVCHNNYK_sorted.bed.gz processed_file_md5 6d6b22287f00085a11404a5df1d3d3e4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_GSCTGCAGTKCCVCHNNYK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_GSCTGCAGTKCCVCHNNYK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF229DYR_GSCTGCAGTKCCVCHNNYK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF229DYR_GSCTGCAGTKCCVCHNNYK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c27eb22122ee5bb17882dd4acc7063e4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac muscle cell;Original_cell_type=cardiac muscle cell;Lab=John Stamatoyannopoulos, UW;System=musculature,circulatory system;ENCODE_BED_id=ENCFF229DYR;ENCODE_bigBed_id=ENCFF728JSA;PMID=34755879;Motif_sequence=GSCTGCAGTKCCVCHNNYK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000746;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Cardiac muscle cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTI] [TFBS]
CTCF • K562 NGFTBQ5RAGW3UI • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBQ5RAGW3UI data_source Factorbook Download track Download number_of_intervals 54,728 bp_covered 820,920 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EGM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 952,391 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF660GHM_CCASCAGRKGGCRSY_sorted.bed.gz processed_file_md5 73e3e7e84f5e5c5dcd3231036a8927d9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF660GHM_CCASCAGRKGGCRSY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF660GHM_CCASCAGRKGGCRSY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF660GHM_CCASCAGRKGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF660GHM_CCASCAGRKGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e89973ab433ea568e0b861d62838db0a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF660GHM;ENCODE_bigBed_id=ENCFF400DFR;PMID=34755879;Motif_sequence=CCASCAGRKGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EGM] [Life stage: Adult] [TFBS]
CTCF • Stomach NGFTBQ723NMMEU • Factorbook34755879 Motif finding Stomach TFBS Show metadata Download track Track metadata identifier NGFTBQ723NMMEU data_source Factorbook Download track Download number_of_intervals 27,578 bp_covered 413,670 output_type transcription factor binding sites all genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id ENCSR549WAU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 477,368 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515HTQ_GCCACCAGGKGGCRS_sorted.bed.gz processed_file_md5 53f9770bf7c6b9cf2f22aa5fa106f4df wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515HTQ_GCCACCAGGKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515HTQ_GCCACCAGGKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF515HTQ_GCCACCAGGKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF515HTQ_GCCACCAGGKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a98a52adc8ae7179f2080d2ce1d7c684 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens stomach tissue male adult (54 years);Original_cell_type=stomach;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF515HTQ;ENCODE_bigBed_id=ENCFF593FMT;PMID=34755879;Motif_sequence=GCCACCAGGKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000945;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Stomach (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR549WAU] [Life stage: Adult] [TFBS]
CTCF • OCI-LY1 NGFTBQ77BLIEUF • Factorbook34755879 Motif finding OCI-LY1 TFBS Show metadata Download track Track metadata identifier NGFTBQ77BLIEUF data_source Factorbook Download track Download number_of_intervals 57,049 bp_covered 855,735 output_type transcription factor binding sites all genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id ENCSR072EUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 934,906 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF029TZI_GCGCCCCCTGGTGGY_sorted.bed.gz processed_file_md5 786b3fabf89a7d575a71e53982115036 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF029TZI_GCGCCCCCTGGTGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF029TZI_GCGCCCCCTGGTGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF029TZI_GCGCCCCCTGGTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF029TZI_GCGCCCCCTGGTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 21c5ac93e8bee0996bc0a6b5daa6f732 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY1;Original_cell_type=OCI-LY1;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF029TZI;ENCODE_bigBed_id=ENCFF455ESK;PMID=34755879;Motif_sequence=GCGCCCCCTGGTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook OCI-LY1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR072EUE] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTBQDZ2HU5RV • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBQDZ2HU5RV data_source Factorbook Download track Download number_of_intervals 21,951 bp_covered 285,363 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR234HEM biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 347,536 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF455BVG_YGCCMCCTGGTGG_sorted.bed.gz processed_file_md5 ba9317db76ce5c9f49f06f12af1a8c16 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF455BVG_YGCCMCCTGGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF455BVG_YGCCMCCTGGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF455BVG_YGCCMCCTGGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF455BVG_YGCCMCCTGGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 90649d1231232c0dd0e46df88b6e0899 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue male adult (37 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF455BVG;ENCODE_bigBed_id=ENCFF282UAO;PMID=34755879;Motif_sequence=YGCCMCCTGGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR234HEM] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTBQF3SCCZEF • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBQF3SCCZEF data_source Factorbook Download track Download number_of_intervals 2 bp_covered 42 output_type transcription factor binding sites significant genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000AMA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 374 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF205OKL_YCYYNVHMTGDCCACYAGRGG_filtered.bed.gz processed_file_md5 7de736ccc34a3aa14db9412c73e2f888 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF205OKL_YCYYNVHMTGDCCACYAGRGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF205OKL_YCYYNVHMTGDCCACYAGRGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF205OKL_YCYYNVHMTGDCCACYAGRGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF205OKL_YCYYNVHMTGDCCACYAGRGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 08195d665b369252280a75672b0e7fb9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Bradley Bernstein, Broad;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF205OKL;ENCODE_bigBed_id=ENCFF194VBQ;PMID=34755879;Motif_sequence=YCYYNVHMTGDCCACYAGRGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AMA] [Life stage: Child] [TFBS]
CTCF • A549 NGFTBQGMXQKEOR • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBQGMXQKEOR data_source Factorbook Download track Download number_of_intervals 8 bp_covered 168 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BHW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 464 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF875TRW_TGCTCCDCAGCGCCCCCTKYS_filtered.bed.gz processed_file_md5 8dc4381ee0e2064c8cdd7fe062ee9c5e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF875TRW_TGCTCCDCAGCGCCCCCTKYS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF875TRW_TGCTCCDCAGCGCCCCCTKYS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF875TRW_TGCTCCDCAGCGCCCCCTKYS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF875TRW_TGCTCCDCAGCGCCCCCTKYS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2e26631f50dc34f438a60ae31f690cba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF875TRW;ENCODE_bigBed_id=ENCFF021BMI;PMID=34755879;Motif_sequence=TGCTCCDCAGCGCCCCCTKYS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHW] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTBQH46TPG5H • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBQH46TPG5H data_source Factorbook Download track Download number_of_intervals 49,412 bp_covered 741,180 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Embryo encode_experiment_id ENCSR000DVQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 856,873 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF209PDE_SYGCCMYCTRGTGGC_sorted.bed.gz processed_file_md5 c646b61d309dd05970bd7cf1f27eb7a5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF209PDE_SYGCCMYCTRGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF209PDE_SYGCCMYCTRGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF209PDE_SYGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF209PDE_SYGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 04053dea16885cec3bd92f7d6ff3ab75 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of villous mesenchyme;Original_cell_type=fibroblast of villous mesenchyme;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF209PDE;ENCODE_bigBed_id=ENCFF345VQO;PMID=34755879;Motif_sequence=SYGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002558;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVQ] [TFBS]
CTCF • Keratinocyte NGFTBQHH6BM57T • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBQHH6BM57T data_source Factorbook Download track Download number_of_intervals 17,815 bp_covered 516,635 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000DWX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 422,439 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM_sorted.bed.gz processed_file_md5 c8e6635890893f96aea5fc72fbb22d9d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c8ecc2698b4bd68c2b9328d0877d677c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens keratinocyte female;Original_cell_type=keratinocyte;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF149BJK;ENCODE_bigBed_id=ENCFF667ULX;PMID=34755879;Motif_sequence=HWWTSRCCRYBAGGKGGCAGCAGARVGCM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWX] [TFBS]
CTCF • H54 NGFTBQIEP5XHFJ • Factorbook34755879 Motif finding H54 TFBS Show metadata Download track Track metadata identifier NGFTBQIEP5XHFJ data_source Factorbook Download track Download number_of_intervals 10,558 bp_covered 158,370 output_type transcription factor binding sites all genome_build hg38 cell_type H54 biosample_type Cell line biosample_term_id EFO:0002782 tissue_category Brain encode_experiment_id ENCSR000DKN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 181,027 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF278EKO_RGHDGCTGCAGTTCC_sorted.bed.gz processed_file_md5 47804d0f12ba52b6c7eca7375f14001f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF278EKO_RGHDGCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF278EKO_RGHDGCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF278EKO_RGHDGCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF278EKO_RGHDGCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c5ae042b8c33bb354d6f60ce0fc61ab4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H54;Original_cell_type=H54;Lab=Vishwanath Iyer, UTA;System=central nervous system;ENCODE_BED_id=ENCFF278EKO;ENCODE_bigBed_id=ENCFF255TVO;PMID=34755879;Motif_sequence=RGHDGCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002782;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook H54 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKN] [Life stage: Adult] [TFBS]
CTCF • Tibial nerve NGFTBQK7GVLGMD • Factorbook34755879 Motif finding Tibial nerve TFBS Show metadata Download track Track metadata identifier NGFTBQK7GVLGMD data_source Factorbook Download track Download number_of_intervals 43,482 bp_covered 652,230 output_type transcription factor binding sites all genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR434XLP biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 653,217 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144XGH_GCCCCCTGSYGGCCR_sorted.bed.gz processed_file_md5 790f262741e9b47aae891bcdefc8b464 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144XGH_GCCCCCTGSYGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF144XGH_GCCCCCTGSYGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF144XGH_GCCCCCTGSYGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF144XGH_GCCCCCTGSYGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 92741fd4b0e041c1b676c41f790f603d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens tibial nerve tissue male adult (37 years);Original_cell_type=tibial nerve;Lab=Michael Snyder, Stanford;System=peripheral nervous system;ENCODE_BED_id=ENCFF144XGH;ENCODE_bigBed_id=ENCFF857SLT;PMID=34755879;Motif_sequence=GCCCCCTGSYGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Tibial nerve (repl. 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR434XLP] [Life stage: Adult] [TFBS]
CTCF • Coronary artery NGFTBQKDOFP76L • Factorbook34755879 Motif finding Coronary artery TFBS Show metadata Download track Track metadata identifier NGFTBQKDOFP76L data_source Factorbook Download track Download number_of_intervals 263 bp_covered 5,523 output_type transcription factor binding sites significant genome_build hg38 cell_type Coronary artery biosample_type Tissue biosample_term_id UBERON:0001621 tissue_category Blood Vessel encode_experiment_id ENCSR175FLL biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,645 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF426FCU_YRGYGCCMCCTDSTGGCCRMD_filtered.bed.gz processed_file_md5 54be7014e20485b959c6990e1c50ef79 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF426FCU_YRGYGCCMCCTDSTGGCCRMD_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF426FCU_YRGYGCCMCCTDSTGGCCRMD_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF426FCU_YRGYGCCMCCTDSTGGCCRMD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF426FCU_YRGYGCCMCCTDSTGGCCRMD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3f55c116a4d9f6d866707c7e51951a85 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens coronary artery tissue female adult (53 years);Original_cell_type=coronary artery;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF426FCU;ENCODE_bigBed_id=ENCFF483TFF;PMID=34755879;Motif_sequence=YRGYGCCMCCTDSTGGCCRMD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001621;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Coronary artery (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR175FLL] [Life stage: Adult] [TFBS]
CTCF • GM20000 NGFTBQL63VC66P • Factorbook34755879 Motif finding GM20000 TFBS Show metadata Download track Track metadata identifier NGFTBQL63VC66P data_source Factorbook Download track Download number_of_intervals 20,908 bp_covered 313,620 output_type transcription factor binding sites all genome_build hg38 cell_type GM20000 biosample_type Cell line biosample_term_id EFO:0005352 tissue_category Blood encode_experiment_id ENCSR000DLG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 353,434 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF171FLG_GCGCCCCCTGSTGGY_sorted.bed.gz processed_file_md5 4a63f68d959e4529f10b7616670763cd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF171FLG_GCGCCCCCTGSTGGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF171FLG_GCGCCCCCTGSTGGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF171FLG_GCGCCCCCTGSTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF171FLG_GCGCCCCCTGSTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3c3fbbbc0556f401f543a8d2664b484d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM20000;Original_cell_type=GM20000;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF171FLG;ENCODE_bigBed_id=ENCFF217HWJ;PMID=34755879;Motif_sequence=GCGCCCCCTGSTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005352;is_hg38_lifted=no system_category Cardiovascular life_stage Child track_name Factorbook GM20000 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLG] [Life stage: Child] [TFBS]
CTCF • Omental fat pad NGFTBQO4OILZP6 • Factorbook34755879 Motif finding Omental fat pad TFBS Show metadata Download track Track metadata identifier NGFTBQO4OILZP6 data_source Factorbook Download track Download number_of_intervals 1,299 bp_covered 14,289 output_type transcription factor binding sites all genome_build hg38 cell_type Omental fat pad biosample_type Tissue biosample_term_id UBERON:0010414 tissue_category Adipose encode_experiment_id ENCSR089DTY biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,298 downloaded_date 07/10/2024 release_date 06/23/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF354AMH_SCTGCARYBCC_sorted.bed.gz processed_file_md5 727db9ac2f4433f016c9551d3c16e868 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF354AMH_SCTGCARYBCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF354AMH_SCTGCARYBCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF354AMH_SCTGCARYBCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF354AMH_SCTGCARYBCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b846ff384e37c9add181b08ea9d22d40 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens omental fat pad tissue male adult (37 years);Original_cell_type=omental fat pad;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF354AMH;ENCODE_bigBed_id=ENCFF735VKJ;PMID=34755879;Motif_sequence=SCTGCARYBCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0010414;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Omental fat pad (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR089DTY] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBQOMD7OWQK • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBQOMD7OWQK data_source Factorbook Download track Download number_of_intervals 43,919 bp_covered 658,785 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DML biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 764,308 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721XKI_SYGCCMYCTRSTGGC_sorted.bed.gz processed_file_md5 f757d92a2f03d85ed17067c27c49cc6e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721XKI_SYGCCMYCTRSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721XKI_SYGCCMYCTRSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF721XKI_SYGCCMYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF721XKI_SYGCCMYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dfe319ac24b36a135d4898d3d1e78731 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF721XKI;ENCODE_bigBed_id=ENCFF531PKD;PMID=34755879;Motif_sequence=SYGCCMYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DML] [Life stage: Adult] [TFBS]
CTCF • Skin NGFTBQPAIO73ZH • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTBQPAIO73ZH data_source Factorbook Download track Download number_of_intervals 132 bp_covered 1,980 output_type transcription factor binding sites significant genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR756KRS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,725 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF147HSY_GGCCRCYAGRKGGCG_filtered.bed.gz processed_file_md5 9ca585d18d790fbeab0530445f5b35c5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF147HSY_GGCCRCYAGRKGGCG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF147HSY_GGCCRCYAGRKGGCG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF147HSY_GGCCRCYAGRKGGCG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF147HSY_GGCCRCYAGRKGGCG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 59ea4725baa490a59d8a509a1d62f7ec data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens suprapubic skin tissue female adult (51 years);Original_cell_type=suprapubic skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF147HSY;ENCODE_bigBed_id=ENCFF198TWE;PMID=34755879;Motif_sequence=GGCCRCYAGRKGGCG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR756KRS] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBQPUMWOBVE • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBQPUMWOBVE data_source Factorbook Download track Download number_of_intervals 141 bp_covered 2,115 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BHW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,749 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF875TRW_RSYGCCMYCTGSTGG_filtered.bed.gz processed_file_md5 52e74cd5ed90f23b6a6a7d346e1fc4a5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF875TRW_RSYGCCMYCTGSTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF875TRW_RSYGCCMYCTGSTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF875TRW_RSYGCCMYCTGSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF875TRW_RSYGCCMYCTGSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 19801bb76e49b86528de0008b337b327 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF875TRW;ENCODE_bigBed_id=ENCFF021BMI;PMID=34755879;Motif_sequence=RSYGCCMYCTGSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHW] [Life stage: Adult] [TFBS]
CTCF • B cell NGFTBQRGJVDOFX • Factorbook34755879 Motif finding B cell TFBS Show metadata Download track Track metadata identifier NGFTBQRGJVDOFX data_source Factorbook Download track Download number_of_intervals 24 bp_covered 720 output_type transcription factor binding sites significant genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR000AUV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 805 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG_filtered.bed.gz processed_file_md5 aa8baa1a17b757b5b67c5c690f809159 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF390ICZ_TTYYYMTTTGCCWGCTGGYGCVATGYTAGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cfca6bdfc733c3a31e35fd9263d8ef8b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens B cell female adult (27 years) and female adult (43 years);Original_cell_type=B cell;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF390ICZ;ENCODE_bigBed_id=ENCFF738RTM;PMID=34755879;Motif_sequence=TTYYYMTTTGCCWGCTGGYGCVATGYTAGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook B cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUV] [Life stage: Adult] [TFBS]
CTCF • HCT116 NGFTBQSU2FHYKK • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBQSU2FHYKK data_source Factorbook Download track Download number_of_intervals 59,098 bp_covered 886,470 output_type transcription factor binding sites all genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR240PRQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 984,191 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_GCCACYAGRKGGCRC_sorted.bed.gz processed_file_md5 ccc8096a043843f565beb1f933d75fe3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_GCCACYAGRKGGCRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_GCCACYAGRKGGCRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF803RIY_GCCACYAGRKGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF803RIY_GCCACYAGRKGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f23c3658f33eec35638c1ed1c3b7529a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=Bradley Bernstein, Broad;System=digestive system;ENCODE_BED_id=ENCFF803RIY;ENCODE_bigBed_id=ENCFF402LTB;PMID=34755879;Motif_sequence=GCCACYAGRKGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR240PRQ] [Life stage: Adult] [TFBS]