CTCF • A549 NGFTBQV2B7XL4I • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBQV2B7XL4I data_source Factorbook Download track Download number_of_intervals 98 bp_covered 1,764 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000AUF biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,205 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF299IYU_VBRSYGCCMYCTRGTGGC_filtered.bed.gz processed_file_md5 19bbd0817de1bf6a67aa6e18993ce2c5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF299IYU_VBRSYGCCMYCTRGTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF299IYU_VBRSYGCCMYCTRGTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF299IYU_VBRSYGCCMYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF299IYU_VBRSYGCCMYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d1a6ce648f23451376b5545768224299 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 0.02% ethanol for 1 hour;Original_cell_type=A549;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF299IYU;ENCODE_bigBed_id=ENCFF439TSJ;PMID=34755879;Motif_sequence=VBRSYGCCMYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUF] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTBQVHQJXNX5 • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBQVHQJXNX5 data_source Factorbook Download track Download number_of_intervals 37,633 bp_covered 564,495 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR450FRI biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 646,031 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF129JPF_GCCRCYAGRGGGCGC_sorted.bed.gz processed_file_md5 92e6762d6a561bb26b4d5dd08bb08659 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF129JPF_GCCRCYAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF129JPF_GCCRCYAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF129JPF_GCCRCYAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF129JPF_GCCRCYAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b1446782930ceec12ec050817261bc85 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue male adult (54 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF129JPF;ENCODE_bigBed_id=ENCFF037IYT;PMID=34755879;Motif_sequence=GCCRCYAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR450FRI] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBQVWXXZK65 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBQVWXXZK65 data_source Factorbook Download track Download number_of_intervals 46,192 bp_covered 923,840 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BHV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 936,661 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF296NHH_VBRSYGCCMYCTGSTGGCCR_sorted.bed.gz processed_file_md5 503625c80fd9fc2e0b06e497ce6b2c89 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF296NHH_VBRSYGCCMYCTGSTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF296NHH_VBRSYGCCMYCTGSTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF296NHH_VBRSYGCCMYCTGSTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF296NHH_VBRSYGCCMYCTGSTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c8b31bf2a260493a25afc4cd91b189e8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF296NHH;ENCODE_bigBed_id=ENCFF679ZFJ;PMID=34755879;Motif_sequence=VBRSYGCCMYCTGSTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHV] [Life stage: Adult] [TFBS]
CTCF • AG09319 NGFTBQW25KUXWJ • Factorbook34755879 Motif finding AG09319 TFBS Show metadata Download track Track metadata identifier NGFTBQW25KUXWJ data_source Factorbook Download track Download number_of_intervals 8,897 bp_covered 71,176 output_type transcription factor binding sites all genome_build hg38 cell_type AG09319 biosample_type Cell line biosample_term_id CLO:0021754 tissue_category Connective Tissue encode_experiment_id ENCSR000DPS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 92,944 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF287MQJ_CAGCYCTG_sorted.bed.gz processed_file_md5 360c881fa1504873f9a775b07f02ebd6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF287MQJ_CAGCYCTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF287MQJ_CAGCYCTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF287MQJ_CAGCYCTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF287MQJ_CAGCYCTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bdf6f143bf232cd90634c2bd3e8bd63f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG09319;Original_cell_type=AG09319;Lab=John Stamatoyannopoulos, UW;System=digestive system;ENCODE_BED_id=ENCFF287MQJ;ENCODE_bigBed_id=ENCFF401ZTN;PMID=34755879;Motif_sequence=CAGCYCTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021754;is_hg38_lifted=no system_category Skeletal life_stage Adult track_name Factorbook AG09319 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPS] [Life stage: Adult] [TFBS]
CTCF • Ovary NGFTBQWD2ZME6U • Factorbook34755879 Motif finding Ovary TFBS Show metadata Download track Track metadata identifier NGFTBQWD2ZME6U data_source Factorbook Download track Download number_of_intervals 31,610 bp_covered 474,150 output_type transcription factor binding sites all genome_build hg38 cell_type Ovary biosample_type Tissue biosample_term_id NCIT:C12404 tissue_category Female Reproductive encode_experiment_id ENCSR493APD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 519,377 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782GIY_SCGCCCCCTGGYGGC_sorted.bed.gz processed_file_md5 4364f3ebb1daf1ac1e90cb3f770908fc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782GIY_SCGCCCCCTGGYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF782GIY_SCGCCCCCTGGYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF782GIY_SCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF782GIY_SCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b81110580056bdef6d89becd24c4a2f4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens ovary tissue female adult (53 years);Original_cell_type=ovary;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF782GIY;ENCODE_bigBed_id=ENCFF062XMG;PMID=34755879;Motif_sequence=SCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000992;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Ovary (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR493APD] [Life stage: Adult] [TFBS]
CTCF • GM12875 NGFTBQWIYS5LWO • Factorbook34755879 Motif finding GM12875 TFBS Show metadata Download track Track metadata identifier NGFTBQWIYS5LWO data_source Factorbook Download track Download number_of_intervals 7,820 bp_covered 78,200 output_type transcription factor binding sites all genome_build hg38 cell_type GM12875 biosample_type Cell line biosample_term_id EFO:0001162 tissue_category Blood encode_experiment_id ENCSR000DRU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 107,245 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_GGAACTGCAG_sorted.bed.gz processed_file_md5 32cf3f360493b72804ea30a86599fad5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_GGAACTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_GGAACTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF456NUW_GGAACTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF456NUW_GGAACTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6352f406a1670b6b1b391a72befb0253 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12875;Original_cell_type=GM12875;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF456NUW;ENCODE_bigBed_id=ENCFF081UCQ;PMID=34755879;Motif_sequence=GGAACTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001162;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12875 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRU] [TFBS]
CTCF • A673 NGFTBQWZIYU4BJ • Factorbook34755879 Motif finding A673 TFBS Show metadata Download track Track metadata identifier NGFTBQWZIYU4BJ data_source Factorbook Download track Download number_of_intervals 60,856 bp_covered 912,840 output_type transcription factor binding sites all genome_build hg38 cell_type A673 biosample_type Cell line biosample_term_id EFO:0002106 tissue_category Skeletal Muscle encode_experiment_id ENCSR611JJS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 965,375 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF986OCA_GCCASYAGRGGGCGC_sorted.bed.gz processed_file_md5 6ef8c3cdc3bb3caf1c8033b91a77e58b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF986OCA_GCCASYAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF986OCA_GCCASYAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF986OCA_GCCASYAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF986OCA_GCCASYAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 64c9452e93ef85c097cc894adfd3df8d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A673;Original_cell_type=A673;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF986OCA;ENCODE_bigBed_id=ENCFF786RXU;PMID=34755879;Motif_sequence=GCCASYAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002106;is_hg38_lifted=no system_category Muscular life_stage Child track_name Factorbook A673 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR611JJS] [Life stage: Child] [TFBS]
CTCF • Skin NGFTBQY3YT33NT • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTBQY3YT33NT data_source Factorbook Download track Download number_of_intervals 2,338 bp_covered 25,718 output_type transcription factor binding sites all genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR038FOS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 34,308 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF525JGP_GGAACTGCAGC_sorted.bed.gz processed_file_md5 a2d427d2e27e7f69c480cab4d7673349 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF525JGP_GGAACTGCAGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF525JGP_GGAACTGCAGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF525JGP_GGAACTGCAGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF525JGP_GGAACTGCAGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b382c913efe263ce600b153014c79cd9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens suprapubic skin tissue male adult (54 years);Original_cell_type=suprapubic skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF525JGP;ENCODE_bigBed_id=ENCFF370ILR;PMID=34755879;Motif_sequence=GGAACTGCAGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR038FOS] [Life stage: Adult] [TFBS]
CTCF • Myoblast NGFTBR3APGCO3W • Factorbook34755879 Motif finding Myoblast TFBS Show metadata Download track Track metadata identifier NGFTBR3APGCO3W data_source Factorbook Download track Download number_of_intervals 38,312 bp_covered 459,744 output_type transcription factor binding sites all genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 563,675 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721RAM_YGCCMYCTRGTG_sorted.bed.gz processed_file_md5 53078505aa6553b0a1e9ab3f87f0f03e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721RAM_YGCCMYCTRGTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721RAM_YGCCMYCTRGTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF721RAM_YGCCMYCTRGTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF721RAM_YGCCMYCTRGTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0fd140a0906e26d3769ac9d6a4b56850 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Original_cell_type=skeletal muscle myoblast;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF721RAM;ENCODE_bigBed_id=ENCFF813BQI;PMID=34755879;Motif_sequence=YGCCMYCTRGTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000515;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Myoblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANE] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTBR4GXF2MMI • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBR4GXF2MMI data_source Factorbook Download track Download number_of_intervals 3,794 bp_covered 37,940 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 53,190 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138REW_GGAAYTGCAG_sorted.bed.gz processed_file_md5 7b3d02d7da8d652d62d09c99083b1061 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138REW_GGAAYTGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138REW_GGAAYTGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF138REW_GGAAYTGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF138REW_GGAAYTGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a61d3cb4485af9a53839d49a9045e1b6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF138REW;ENCODE_bigBed_id=ENCFF929GSU;PMID=34755879;Motif_sequence=GGAAYTGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZN] [TFBS]
CTCF • Adrenal gland NGFTBR4J2KU3EC • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBR4J2KU3EC data_source Factorbook Download track Download number_of_intervals 45,761 bp_covered 732,176 output_type transcription factor binding sites all genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR770IWO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 790,210 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_CCACCAGGGGGCRCYV_sorted.bed.gz processed_file_md5 2213fb27f9fe08cc2743604b3173944a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_CCACCAGGGGGCRCYV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SOE_CCACCAGGGGGCRCYV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SOE_CCACCAGGGGGCRCYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SOE_CCACCAGGGGGCRCYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 933b44dd1a5b18558898383839bdde2b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (53 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF059SOE;ENCODE_bigBed_id=ENCFF678WUB;PMID=34755879;Motif_sequence=CCACCAGGGGGCRCYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR770IWO] [Life stage: Adult] [TFBS]
CTCF • Peyers patch NGFTBR6UIMFW35 • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBR6UIMFW35 data_source Factorbook Download track Download number_of_intervals 8,203 bp_covered 172,263 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR375VXU biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 164,425 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_ADGCTGCAGTTYYNNMHKTKG_sorted.bed.gz processed_file_md5 b227bbf8974b88b91bbe57542cce0a3b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_ADGCTGCAGTTYYNNMHKTKG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF013GUN_ADGCTGCAGTTYYNNMHKTKG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF013GUN_ADGCTGCAGTTYYNNMHKTKG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF013GUN_ADGCTGCAGTTYYNNMHKTKG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bfc917ceccdaf9a5a23db751bf55a5c0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue female adult (53 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF013GUN;ENCODE_bigBed_id=ENCFF746TCR;PMID=34755879;Motif_sequence=ADGCTGCAGTTYYNNMHKTKG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR375VXU] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBR7C7LGVQO • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBR7C7LGVQO data_source Factorbook Download track Download number_of_intervals 26 bp_covered 754 output_type transcription factor binding sites significant genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DLW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 877 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG_filtered.bed.gz processed_file_md5 53e7be0c47116273e54ac0f20731850c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF601VJF_GTATTRCAAYCCATTGGTRTAACWARYAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 094b5c2f7ef90e73ddccda557f0bb8c5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Vishwanath Iyer, UTA;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF601VJF;ENCODE_bigBed_id=ENCFF336GRA;PMID=34755879;Motif_sequence=GTATTRCAAYCCATTGGTRTAACWARYAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLW] [TFBS]
CTCF • K562 NGFTBRBNUFIIKX • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRBNUFIIKX data_source Factorbook Download track Download number_of_intervals 51,057 bp_covered 765,855 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DWE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 884,702 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF736NYC_SCGCCCYCTGSTGGC_sorted.bed.gz processed_file_md5 11fd7349d203816a75b1b4357b58ced6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF736NYC_SCGCCCYCTGSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF736NYC_SCGCCCYCTGSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF736NYC_SCGCCCYCTGSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF736NYC_SCGCCCYCTGSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2697f4f3b82e9306f1a72db1232ad514 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF736NYC;ENCODE_bigBed_id=ENCFF598YSU;PMID=34755879;Motif_sequence=SCGCCCYCTGSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWE] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBRBSZ3DJQN • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBRBSZ3DJQN data_source Factorbook Download track Download number_of_intervals 33,446 bp_covered 702,366 output_type transcription factor binding sites all genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DLW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 671,646 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW_sorted.bed.gz processed_file_md5 8709411328d3d42f723ea5add4c57b5c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b9de13e3d70d7c79e2c105ebfa572454 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Vishwanath Iyer, UTA;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF601VJF;ENCODE_bigBed_id=ENCFF336GRA;PMID=34755879;Motif_sequence=TASYGCCMYCTAGTGGHHANW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLW] [TFBS]
CTCF • GM10248 NGFTBRBWPC34AX • Factorbook34755879 Motif finding GM10248 TFBS Show metadata Download track Track metadata identifier NGFTBRBWPC34AX data_source Factorbook Download track Download number_of_intervals 7,133 bp_covered 78,463 output_type transcription factor binding sites all genome_build hg38 cell_type GM10248 biosample_type Cell line biosample_term_id EFO:0005334 tissue_category Blood encode_experiment_id ENCSR000DKP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 102,364 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF180XBL_GGAACTGCAGS_sorted.bed.gz processed_file_md5 aa7f65b5c46ac6a12e579ebd120e1099 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF180XBL_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF180XBL_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF180XBL_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF180XBL_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4113f77c7a7a9feb7c9c78659d308868 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM10248;Original_cell_type=GM10248;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF180XBL;ENCODE_bigBed_id=ENCFF083HVS;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005334;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM10248 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKP] [Life stage: Adult] [TFBS]
CTCF • Transverse colon NGFTBRCU23BSYP • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTBRCU23BSYP data_source Factorbook Download track Download number_of_intervals 461 bp_covered 7,837 output_type transcription factor binding sites significant genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR769WKR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,256 downloaded_date 07/10/2024 release_date 07/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF827OLU_GCCACCAGGKGGCRSYV_filtered.bed.gz processed_file_md5 8be1e8f4aa60ebe4b5f0cdd3f9fa280b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF827OLU_GCCACCAGGKGGCRSYV_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF827OLU_GCCACCAGGKGGCRSYV_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF827OLU_GCCACCAGGKGGCRSYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF827OLU_GCCACCAGGKGGCRSYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0f2a3e1b645f1b1f059dbb5ab2f7aef8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue female adult (53 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF827OLU;ENCODE_bigBed_id=ENCFF471AZS;PMID=34755879;Motif_sequence=GCCACCAGGKGGCRSYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR769WKR] [Life stage: Adult] [TFBS]
CTCF • Keratinocyte NGFTBRDLDPNZBC • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBRDLDPNZBC data_source Factorbook Download track Download number_of_intervals 10,346 bp_covered 113,806 output_type transcription factor binding sites all genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR036EGV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 137,194 downloaded_date 07/10/2024 release_date 10/10/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_GCGCMTGCGCA_sorted.bed.gz processed_file_md5 230dafb7df854a1aff04b9b76589482d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_GCGCMTGCGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF645QAX_GCGCMTGCGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF645QAX_GCGCMTGCGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF645QAX_GCGCMTGCGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 472c54db22ef10f335020f7b1b7c982f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2.5 days;Original_cell_type=foreskin keratinocyte;Lab=Michael Snyder, Stanford;System=integumental system,reproductive system;ENCODE_BED_id=ENCFF645QAX;ENCODE_bigBed_id=ENCFF246DDI;PMID=34755879;Motif_sequence=GCGCMTGCGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:1001606;is_hg38_lifted=no system_category Integumentary life_stage Newborn track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR036EGV] [Life stage: Newborn] [TFBS]
CTCF • GM23338 NGFTBRETZHAB4Q • Factorbook34755879 Motif finding GM23338 TFBS Show metadata Download track Track metadata identifier NGFTBRETZHAB4Q data_source Factorbook Download track Download number_of_intervals 32,019 bp_covered 480,285 output_type transcription factor binding sites all genome_build hg38 cell_type GM23338 biosample_type Induced pluripotent stem cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR987GXT biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 502,265 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_CACBAGRKGGCAGCA_sorted.bed.gz processed_file_md5 2e6de45f88b1c87596777210919589bf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_CACBAGRKGGCAGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991TMD_CACBAGRKGGCAGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF991TMD_CACBAGRKGGCAGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF991TMD_CACBAGRKGGCAGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 db68ba284535d7df08bc062488ed74d1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Original_cell_type=GM23338;Lab=Bradley Bernstein, Broad;System=integumental system;ENCODE_BED_id=ENCFF991TMD;ENCODE_bigBed_id=ENCFF419AZG;PMID=34755879;Motif_sequence=CACBAGRKGGCAGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name Factorbook GM23338 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR987GXT] [Life stage: Adult] [TFBS]
CTCF • Transverse colon NGFTBRGNNXCFG3 • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTBRGNNXCFG3 data_source Factorbook Download track Download number_of_intervals 54,333 bp_covered 814,995 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR102CSD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 824,266 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_SCGCCCCCTGGTGGC_sorted.bed.gz processed_file_md5 33f15858136b5ff845b9d4146dfcc127 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_SCGCCCCCTGGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_SCGCCCCCTGGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF292GYB_SCGCCCCCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF292GYB_SCGCCCCCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f421d1b21b7cdddcb86f9dd729293b7f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue male adult (37 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF292GYB;ENCODE_bigBed_id=ENCFF749DPF;PMID=34755879;Motif_sequence=SCGCCCCCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR102CSD] [Life stage: Adult] [TFBS]