CTCF • OCI-LY7 NGFTBSOYH5TB7W • Factorbook34755879 Motif finding OCI-LY7 TFBS Show metadata Download track Track metadata identifier NGFTBSOYH5TB7W data_source Factorbook Download track Download number_of_intervals 79,804 bp_covered 1,197,060 output_type transcription factor binding sites all genome_build hg38 cell_type OCI-LY7 biosample_type Cell line biosample_term_id EFO:0006711 tissue_category Blood encode_experiment_id ENCSR027HML biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,061,928 downloaded_date 07/10/2024 release_date 07/11/2014 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF923ASQ_RCCACYAGRKGGCRC_sorted.bed.gz processed_file_md5 0b018f4a54201e673e0b60dc37e09a5f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF923ASQ_RCCACYAGRKGGCRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF923ASQ_RCCACYAGRKGGCRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF923ASQ_RCCACYAGRKGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF923ASQ_RCCACYAGRKGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f6a53384deea3daac95b61ae7e742b88 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY7;Original_cell_type=OCI-LY7;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF923ASQ;ENCODE_bigBed_id=ENCFF729KPU;PMID=34755879;Motif_sequence=RCCACYAGRKGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006711;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook OCI-LY7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR027HML] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBSP3B46EGX • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBSP3B46EGX data_source Factorbook Download track Download number_of_intervals 874 bp_covered 18,354 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR173IEA biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 12,479 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC_filtered.bed.gz processed_file_md5 765f6b942f41f03a472538a978a03230 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f5c72fade4a5dd6a4aa74d6aba421917 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF069WWV;ENCODE_bigBed_id=ENCFF796EIA;PMID=34755879;Motif_sequence=CCACYAGRKGGCRCYVBNGSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR173IEA] [Life stage: Adult] [TFBS]
CTCF • T47D NGFTBSPD66Q57I • Factorbook34755879 Motif finding T47D TFBS Show metadata Download track Track metadata identifier NGFTBSPD66Q57I data_source Factorbook Download track Download number_of_intervals 2,116 bp_covered 59,248 output_type transcription factor binding sites all genome_build hg38 cell_type T47D biosample_type Cell line biosample_term_id EFO:0001247 tissue_category Breast encode_experiment_id ENCSR000BNO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 50,453 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA_sorted.bed.gz processed_file_md5 05b1a26fb5ea245ae7f4302956670eb8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF524DPR_TACTGCAGYCTCKCTGGTGSTGTAGTAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 48cf4b92461943f9bb486e5388fd7b49 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens T47D treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=T47D;Lab=Richard Myers, HAIB;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF524DPR;ENCODE_bigBed_id=ENCFF063ZXA;PMID=34755879;Motif_sequence=TACTGCAGYCTCKCTGGTGSTGTAGTAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001247;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook T47D (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BNO] [Life stage: Adult] [TFBS]
CTCF • GM13976 NGFTBSQ7MKRB6R • Factorbook34755879 Motif finding GM13976 TFBS Show metadata Download track Track metadata identifier NGFTBSQ7MKRB6R data_source Factorbook Download track Download number_of_intervals 6,887 bp_covered 75,757 output_type transcription factor binding sites all genome_build hg38 cell_type GM13976 biosample_type Cell line biosample_term_id EFO:0005345 tissue_category Blood encode_experiment_id ENCSR000DKZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 97,338 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF679GGX_GSCTGCAGTKC_sorted.bed.gz processed_file_md5 166898087b92bfc7b435be9d5b6461c6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF679GGX_GSCTGCAGTKC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF679GGX_GSCTGCAGTKC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF679GGX_GSCTGCAGTKC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF679GGX_GSCTGCAGTKC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2fb21ad5226c71a6eccfb567187f592d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM13976;Original_cell_type=GM13976;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF679GGX;ENCODE_bigBed_id=ENCFF896BYT;PMID=34755879;Motif_sequence=GSCTGCAGTKC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005345;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM13976 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKZ] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTBSQQA666KD • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBSQQA666KD data_source Factorbook Download track Download number_of_intervals 39,797 bp_covered 756,143 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id ENCSR697YIN biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 719,903 downloaded_date 07/10/2024 release_date 02/08/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758FTM_CCACCAGGGGGCRSYVBVG_sorted.bed.gz processed_file_md5 aeb0f11dbce298cdd19d35d243d1402b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758FTM_CCACCAGGGGGCRSYVBVG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF758FTM_CCACCAGGGGGCRSYVBVG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758FTM_CCACCAGGGGGCRSYVBVG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758FTM_CCACCAGGGGGCRSYVBVG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f0f9d2ed35ccdf060cce7215e25ebd71 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens breast epithelium tissue male adult (54 years);Original_cell_type=breast epithelium;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF758FTM;ENCODE_bigBed_id=ENCFF341QWO;PMID=34755879;Motif_sequence=CCACCAGGGGGCRSYVBVG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Epithelium (repl. 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR697YIN] [Life stage: Adult] [TFBS]
CTCF • SK-N-SH NGFTBSR6WHY5S6 • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBSR6WHY5S6 data_source Factorbook Download track Download number_of_intervals 10,349 bp_covered 103,490 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000EIC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 139,468 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_CTGCAGTYCY_sorted.bed.gz processed_file_md5 2a8cf509363b795196e441c9b2818b0b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_CTGCAGTYCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_CTGCAGTYCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF608JKY_CTGCAGTYCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF608JKY_CTGCAGTYCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3d74196c6c980b303982a86b91fe01d9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Michael Snyder, Stanford;System=central nervous system;ENCODE_BED_id=ENCFF608JKY;ENCODE_bigBed_id=ENCFF731NJX;PMID=34755879;Motif_sequence=CTGCAGTYCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EIC] [Life stage: Child] [TFBS]
CTCF • GM12878 NGFTBSR7DWYBWA • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBSR7DWYBWA data_source Factorbook Download track Download number_of_intervals 46,537 bp_covered 884,203 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AKB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 866,017 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_CNVBRSYGCCMYCTRSTGG_sorted.bed.gz processed_file_md5 e84017b44f343773a35e312ea0fbed91 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_CNVBRSYGCCMYCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_CNVBRSYGCCMYCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF797SDL_CNVBRSYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF797SDL_CNVBRSYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8baf180e4c39259c5e11859904fb672f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF797SDL;ENCODE_bigBed_id=ENCFF217EAX;PMID=34755879;Motif_sequence=CNVBRSYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKB] [TFBS]
CTCF • Ishikawa NGFTBSUJFLONUF • Factorbook34755879 Motif finding Ishikawa TFBS Show metadata Download track Track metadata identifier NGFTBSUJFLONUF data_source Factorbook Download track Download number_of_intervals 26,980 bp_covered 404,700 output_type transcription factor binding sites all genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BQE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 465,526 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF809WKH_RGYGCCMYCTRSTGG_sorted.bed.gz processed_file_md5 4b70c11262931e2f10063b44e8b6ecc4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF809WKH_RGYGCCMYCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF809WKH_RGYGCCMYCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF809WKH_RGYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF809WKH_RGYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c4ef8a42bd4ac6c813f01a2575a8516a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour;Original_cell_type=Ishikawa;Lab=Richard Myers, HAIB;System=reproductive system;ENCODE_BED_id=ENCFF809WKH;ENCODE_bigBed_id=ENCFF516BSM;PMID=34755879;Motif_sequence=RGYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Ishikawa (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BQE] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBSVITYMI4G • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBSVITYMI4G data_source Factorbook Download track Download number_of_intervals 56,727 bp_covered 1,191,267 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR173IEA biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 995,071 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC_sorted.bed.gz processed_file_md5 35cfe8d493692e3708b8aa34e861062f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF069WWV_CCACYAGRKGGCRCYVBNGSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f5c72fade4a5dd6a4aa74d6aba421917 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 7 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF069WWV;ENCODE_bigBed_id=ENCFF796EIA;PMID=34755879;Motif_sequence=CCACYAGRKGGCRCYVBNGSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR173IEA] [Life stage: Adult] [TFBS]
CTCF • Peyers patch NGFTBSVLTIYNIG • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBSVLTIYNIG data_source Factorbook Download track Download number_of_intervals 8,248 bp_covered 107,224 output_type transcription factor binding sites all genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR419ANE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 129,052 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF631JVL_AGGCTGCAGTWCC_sorted.bed.gz processed_file_md5 e3310403ed76878b90d06e98a42b4262 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF631JVL_AGGCTGCAGTWCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF631JVL_AGGCTGCAGTWCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF631JVL_AGGCTGCAGTWCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF631JVL_AGGCTGCAGTWCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4824f25382ea500a3008cbb513dae946 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (37 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF631JVL;ENCODE_bigBed_id=ENCFF701KWW;PMID=34755879;Motif_sequence=AGGCTGCAGTWCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR419ANE] [Life stage: Adult] [TFBS]
CTCF • Neutrophil NGFTBSXFTEYFJD • Factorbook34755879 Motif finding Neutrophil TFBS Show metadata Download track Track metadata identifier NGFTBSXFTEYFJD data_source Factorbook Download track Download number_of_intervals 454 bp_covered 6,810 output_type transcription factor binding sites significant genome_build hg38 cell_type Neutrophil biosample_type Primary cell biosample_term_id CL:0000775 tissue_category Blood encode_experiment_id ENCSR785YRL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,039 downloaded_date 07/10/2024 release_date 12/01/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610WXV_GCCRSCAGGGGGCGC_filtered.bed.gz processed_file_md5 bb2026869215db5feaf5ee640be29aad wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610WXV_GCCRSCAGGGGGCGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF610WXV_GCCRSCAGGGGGCGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF610WXV_GCCRSCAGGGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF610WXV_GCCRSCAGGGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fa527d5ef7680f93448810a00e12dfc2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens neutrophil;Original_cell_type=neutrophil;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF610WXV;ENCODE_bigBed_id=ENCFF770HHA;PMID=34755879;Motif_sequence=GCCRSCAGGGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000775;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Neutrophil (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR785YRL] [TFBS]
CTCF • Endothelial cell NGFTBT2DSIUWJT • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBT2DSIUWJT data_source Factorbook Download track Download number_of_intervals 15,038 bp_covered 165,418 output_type transcription factor binding sites all genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Blood Vessel encode_experiment_id ENCSR000DTA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 209,407 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985NAQ_GGAACTGCAGS_sorted.bed.gz processed_file_md5 98b7af5709266d8a3205129b32f080cd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985NAQ_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985NAQ_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF985NAQ_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF985NAQ_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fcca781d9736b67fb65e33841f79549f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens brain microvascular endothelial cell;Original_cell_type=brain microvascular endothelial cell;Lab=John Stamatoyannopoulos, UW;System=central nervous system,circulatory system;ENCODE_BED_id=ENCFF985NAQ;ENCODE_bigBed_id=ENCFF526VHE;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:2000044;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTA] [TFBS]
CTCF • LNCAP NGFTBT3YF6TPA7 • Factorbook34755879 Motif finding LNCAP TFBS Show metadata Download track Track metadata identifier NGFTBT3YF6TPA7 data_source Factorbook Download track Download number_of_intervals 10,005 bp_covered 100,050 output_type transcription factor binding sites all genome_build hg38 cell_type LNCAP biosample_type Cell line biosample_term_id EFO:0002071 tissue_category Male Reproductive encode_experiment_id ENCSR673WZL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 113,543 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_CTGCAGTKCC_sorted.bed.gz processed_file_md5 b8d1a677952d11e4091ecda1d20e9a6e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_CTGCAGTKCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_CTGCAGTKCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF053EYR_CTGCAGTKCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF053EYR_CTGCAGTKCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5335554739f154422b65616e27f6d8c3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCAP treated with 10 nM 17_-hydroxy-5_-androstan-3-one for 4 hours;Original_cell_type=LNCAP;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF053EYR;ENCODE_bigBed_id=ENCFF797RTH;PMID=34755879;Motif_sequence=CTGCAGTKCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002071;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCAP (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR673WZL] [Life stage: Adult] [TFBS]
CTCF • Gastrocnemius medialis NGFTBT55BUMOSG • Factorbook34755879 Motif finding Gastrocnemius medialis TFBS Show metadata Download track Track metadata identifier NGFTBT55BUMOSG data_source Factorbook Download track Download number_of_intervals 44,195 bp_covered 662,925 output_type transcription factor binding sites all genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR428BKN biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 680,506 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF575JKS_GCGCCCCCTGSYGGC_sorted.bed.gz processed_file_md5 9dae68d3b0ed6d0c609ee02ac22cb94d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF575JKS_GCGCCCCCTGSYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF575JKS_GCGCCCCCTGSYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF575JKS_GCGCCCCCTGSYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF575JKS_GCGCCCCCTGSYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bb851244786eb445e61910eec4008819 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (53 years);Original_cell_type=gastrocnemius medialis;Lab=Michael Snyder, Stanford;System=musculature;ENCODE_BED_id=ENCFF575JKS;ENCODE_bigBed_id=ENCFF410RHW;PMID=34755879;Motif_sequence=GCGCCCCCTGSYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Gastrocnemius medialis (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR428BKN] [Life stage: Adult] [TFBS]
CTCF • K562 NGFTBT5XGHSI2Y • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBT5XGHSI2Y data_source Factorbook Download track Download number_of_intervals 12 bp_covered 360 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BPJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 641 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST_filtered.bed.gz processed_file_md5 08215b76b68ac95018d390b564fccd88 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f6a22e228b6667e9f68d64f0a183386a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF582SNT;ENCODE_bigBed_id=ENCFF111MGE;PMID=34755879;Motif_sequence=TGTCTGTGRTACTGCAGHCTCBCTGGTGST;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPJ] [Life stage: Adult] [TFBS]
CTCF • Pancreas NGFTBT7AZHNPUD • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTBT7AZHNPUD data_source Factorbook Download track Download number_of_intervals 43,443 bp_covered 651,645 output_type transcription factor binding sites all genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR484DDO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 729,523 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_CCRSCAGGGGGCGCY_sorted.bed.gz processed_file_md5 f4cefaeeb8b1b1817a49a61a2a2b5b7d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_CCRSCAGGGGGCGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_CCRSCAGGGGGCGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF061ZXI_CCRSCAGGGGGCGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF061ZXI_CCRSCAGGGGGCGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9aaa3b438c4347a5b3e3687b3078e7d4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens body of pancreas tissue female adult (53 years);Original_cell_type=body of pancreas;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF061ZXI;ENCODE_bigBed_id=ENCFF881RGF;PMID=34755879;Motif_sequence=CCRSCAGGGGGCGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001150;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR484DDO] [Life stage: Adult] [TFBS]
CTCF • HeLa-S3 NGFTBTAZZHKQDD • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBTAZZHKQDD data_source Factorbook Download track Download number_of_intervals 41,740 bp_covered 542,620 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DUB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 664,347 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF030QAM_CGCCCYCTGGTGG_sorted.bed.gz processed_file_md5 befd72c7efb0d3c7263fdfbd275abeda wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF030QAM_CGCCCYCTGGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF030QAM_CGCCCYCTGGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF030QAM_CGCCCYCTGGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF030QAM_CGCCCYCTGGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 335f0809696b2cceda34bd36c2259659 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3 G1b phase;Original_cell_type=HeLa-S3;Lab=John Stamatoyannopoulos, UW;System=reproductive system;ENCODE_BED_id=ENCFF030QAM;ENCODE_bigBed_id=ENCFF626XQK;PMID=34755879;Motif_sequence=CGCCCYCTGGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUB] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBTC6YPY4ZR • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBTC6YPY4ZR data_source Factorbook Download track Download number_of_intervals 6 bp_covered 174 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 505 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF948CYD_CCYCTDGTGGCMARDKKCGGMANTGCABS_filtered.bed.gz processed_file_md5 3b7eee5fb8657087de6299c3c9b2796c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF948CYD_CCYCTDGTGGCMARDKKCGGMANTGCABS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF948CYD_CCYCTDGTGGCMARDKKCGGMANTGCABS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF948CYD_CCYCTDGTGGCMARDKKCGGMANTGCABS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF948CYD_CCYCTDGTGGCMARDKKCGGMANTGCABS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 37cbf7967b7ceee8cd0a2e2f1f94a3f2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=John Stamatoyannopoulos, UW;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF948CYD;ENCODE_bigBed_id=ENCFF139NQI;PMID=34755879;Motif_sequence=CCYCTDGTGGCMARDKKCGGMANTGCABS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWH] [Life stage: Adult] [TFBS]
CTCF • AG09309 NGFTBTCERE73AU • Factorbook34755879 Motif finding AG09309 TFBS Show metadata Download track Track metadata identifier NGFTBTCERE73AU data_source Factorbook Download track Download number_of_intervals 10,732 bp_covered 118,052 output_type transcription factor binding sites all genome_build hg38 cell_type AG09309 biosample_type Cell line biosample_term_id CLO:0021752 tissue_category Skin encode_experiment_id ENCSR000DPP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 150,697 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_GGAACTGCAGS_sorted.bed.gz processed_file_md5 4fff6a704b517ae6f681d9ff5ed61b3d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF693KJZ_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF693KJZ_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF693KJZ_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bc865757f18d96ceb62102985dd455da data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG09309;Original_cell_type=AG09309;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF693KJZ;ENCODE_bigBed_id=ENCFF478XPS;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021752;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG09309 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPP] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBTCRQAGIUN • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBTCRQAGIUN data_source Factorbook Download track Download number_of_intervals 23,930 bp_covered 191,440 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 242,814 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF948CYD_YYCTBCWG_sorted.bed.gz processed_file_md5 109c0e762d0993ee9ce343fd1c2dd161 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF948CYD_YYCTBCWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF948CYD_YYCTBCWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF948CYD_YYCTBCWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF948CYD_YYCTBCWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 573b5da58c8f1d51b9833d48dce341b0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=John Stamatoyannopoulos, UW;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF948CYD;ENCODE_bigBed_id=ENCFF139NQI;PMID=34755879;Motif_sequence=YYCTBCWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWH] [Life stage: Adult] [TFBS]