CTCF • A549 NGFTBTDXYJDN5O • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBTDXYJDN5O data_source Factorbook Download track Download number_of_intervals 50,241 bp_covered 753,615 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR336VBV biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 730,500 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF147AWU_GCCASCAGRGGGCGC_sorted.bed.gz processed_file_md5 c2f6bbee1418b4fe55af1639972d100d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF147AWU_GCCASCAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF147AWU_GCCASCAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF147AWU_GCCASCAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF147AWU_GCCASCAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0428dfaf47ab49922c6d68e6fb190167 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 10 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF147AWU;ENCODE_bigBed_id=ENCFF495URM;PMID=34755879;Motif_sequence=GCCASCAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR336VBV] [Life stage: Adult] [TFBS]
CTCF • HeLa-S3 NGFTBTFX7T6WXR • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBTFX7T6WXR data_source Factorbook Download track Download number_of_intervals 41,131 bp_covered 616,965 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000AOA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 657,273 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF111RWV_GGCCACYAGRGGGCR_sorted.bed.gz processed_file_md5 6b38756298b8a13f8e34e08225cfb865 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF111RWV_GGCCACYAGRGGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF111RWV_GGCCACYAGRGGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF111RWV_GGCCACYAGRGGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF111RWV_GGCCACYAGRGGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3231ce4305e7f8df4e0b75be52bfb91f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Bradley Bernstein, Broad;System=reproductive system;ENCODE_BED_id=ENCFF111RWV;ENCODE_bigBed_id=ENCFF255ASZ;PMID=34755879;Motif_sequence=GGCCACYAGRGGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AOA] [Life stage: Adult] [TFBS]
CTCF • GM10266 NGFTBTHMP3BYG4 • Factorbook34755879 Motif finding GM10266 TFBS Show metadata Download track Track metadata identifier NGFTBTHMP3BYG4 data_source Factorbook Download track Download number_of_intervals 8,630 bp_covered 163,970 output_type transcription factor binding sites all genome_build hg38 cell_type GM10266 biosample_type Cell line biosample_term_id EFO:0005335 tissue_category Blood encode_experiment_id ENCSR000DKR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 165,411 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855DQD_KVDGCTGCAGTKCCVMHBY_sorted.bed.gz processed_file_md5 596a668be33cbd4c571544aa7573aaec wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855DQD_KVDGCTGCAGTKCCVMHBY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF855DQD_KVDGCTGCAGTKCCVMHBY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF855DQD_KVDGCTGCAGTKCCVMHBY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF855DQD_KVDGCTGCAGTKCCVMHBY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 aa8c24d6029b23d6f0525aaaf9e142c9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM10266;Original_cell_type=GM10266;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF855DQD;ENCODE_bigBed_id=ENCFF241YYF;PMID=34755879;Motif_sequence=KVDGCTGCAGTKCCVMHBY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005335;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM10266 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DKR] [Life stage: Adult] [TFBS]
CTCF • HCT116 NGFTBTHW3QZVA5 • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBTHW3QZVA5 data_source Factorbook Download track Download number_of_intervals 383 bp_covered 6,511 output_type transcription factor binding sites significant genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR000DTO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,502 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF832INR_YGGCCASYAGRGGGCRC_filtered.bed.gz processed_file_md5 80c6978a7199b2138148fe6f92599633 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF832INR_YGGCCASYAGRGGGCRC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF832INR_YGGCCASYAGRGGGCRC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF832INR_YGGCCASYAGRGGGCRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF832INR_YGGCCASYAGRGGGCRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ef141cca0ccc4c7970db55aa461c0e8f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=John Stamatoyannopoulos, UW;System=digestive system;ENCODE_BED_id=ENCFF832INR;ENCODE_bigBed_id=ENCFF209YMI;PMID=34755879;Motif_sequence=YGGCCASYAGRGGGCRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTO] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBTHWVTZPZ5 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBTHWVTZPZ5 data_source Factorbook Download track Download number_of_intervals 710 bp_covered 12,070 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,879 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF163JHE_GCCASCAGRKGGCRSYV_filtered.bed.gz processed_file_md5 755d9dac4b090a14156ca016beb4c15a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF163JHE_GCCASCAGRKGGCRSYV_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF163JHE_GCCASCAGRKGGCRSYV_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF163JHE_GCCASCAGRKGGCRSYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF163JHE_GCCASCAGRKGGCRSYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 67075a7e0313873f3132db04756e717a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF163JHE;ENCODE_bigBed_id=ENCFF414SZG;PMID=34755879;Motif_sequence=GCCASCAGRKGGCRSYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMV] [Life stage: Adult] [TFBS]
CTCF • Liver lobe NGFTBTI2V4TSBL • Factorbook34755879 Motif finding Liver lobe TFBS Show metadata Download track Track metadata identifier NGFTBTI2V4TSBL data_source Factorbook Download track Download number_of_intervals 8,581 bp_covered 94,391 output_type transcription factor binding sites all genome_build hg38 cell_type Liver lobe biosample_type Tissue biosample_term_id UBERON:0001113 tissue_category Liver encode_experiment_id ENCSR911GFJ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 120,176 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046XEZ_GGWACTGCAGC_sorted.bed.gz processed_file_md5 e6ef3d6d9cc8bf754541b8b4663a9e53 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046XEZ_GGWACTGCAGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046XEZ_GGWACTGCAGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF046XEZ_GGWACTGCAGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF046XEZ_GGWACTGCAGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 580e0d9dc1d67afc570611ea28b10fc2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens right lobe of liver tissue female adult (53 years);Original_cell_type=right lobe of liver;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF046XEZ;ENCODE_bigBed_id=ENCFF956UTA;PMID=34755879;Motif_sequence=GGWACTGCAGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001114;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver lobe (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR911GFJ] [Life stage: Adult] [TFBS]
CTCF • Adrenal gland NGFTBTKL3MNHYB • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBTKL3MNHYB data_source Factorbook Download track Download number_of_intervals 45 bp_covered 945 output_type transcription factor binding sites significant genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR014GSQ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,098 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR_filtered.bed.gz processed_file_md5 55906e1b476f5e40c1cfa90d650287f4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 87bf1527df3e545f04df71978f8da359 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (51 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF969MVE;ENCODE_bigBed_id=ENCFF282ZUL;PMID=34755879;Motif_sequence=SCAGGGGGCGCTGCWGMSMCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR014GSQ] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTBTL3ONBAQ4 • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBTL3ONBAQ4 data_source Factorbook Download track Download number_of_intervals 9,378 bp_covered 103,158 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000DUH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 131,388 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991RIU_GGAACTGCAGS_sorted.bed.gz processed_file_md5 c3ba48887ae9ba5dcd72354ccff67bc9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991RIU_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF991RIU_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF991RIU_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF991RIU_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 126bcad5ae2904be477c663137627e2a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens foreskin fibroblast male newborn;Original_cell_type=foreskin fibroblast;Lab=John Stamatoyannopoulos, UW;System=integumental system,reproductive system;ENCODE_BED_id=ENCFF991RIU;ENCODE_bigBed_id=ENCFF219EBQ;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:1001608;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Fibroblast (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUH] [TFBS]
CTCF • Hepatocyte NGFTBTL42LW5OA • Factorbook34755879 Motif finding Hepatocyte TFBS Show metadata Download track Track metadata identifier NGFTBTL42LW5OA data_source Factorbook Download track Download number_of_intervals 51,329 bp_covered 769,935 output_type transcription factor binding sites all genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR252QYR biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 886,891 downloaded_date 07/10/2024 release_date 11/23/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF409HJF_GCCASCAGRKGGCGC_sorted.bed.gz processed_file_md5 7b8c825d14f40b35cd841b5a78fde713 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF409HJF_GCCASCAGRKGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF409HJF_GCCASCAGRKGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF409HJF_GCCASCAGRKGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF409HJF_GCCASCAGRKGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6f5c9d1b133f68309d05137af2f87631 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens hepatocyte originated from H9;Original_cell_type=hepatocyte;Lab=Bradley Bernstein, Broad;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF409HJF;ENCODE_bigBed_id=ENCFF263BLJ;PMID=34755879;Motif_sequence=GCCASCAGRKGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name Factorbook Hepatocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR252QYR] [Life stage: Embryonic] [TFBS]
CTCF • Epithelium NGFTBTLZBKSYOU • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBTLZBKSYOU data_source Factorbook Download track Download number_of_intervals 35,432 bp_covered 531,480 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR773JBP biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 592,875 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_BRSCGCCCCCTGSYG_sorted.bed.gz processed_file_md5 481ac1d3591f6a3cda0fbc3ea6503961 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_BRSCGCCCCCTGSYG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_BRSCGCCCCCTGSYG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF848GUU_BRSCGCCCCCTGSYG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF848GUU_BRSCGCCCCCTGSYG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ec8b849009d7abf7ca8316e481172827 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (53 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF848GUU;ENCODE_bigBed_id=ENCFF683HYK;PMID=34755879;Motif_sequence=BRSCGCCCCCTGSYG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR773JBP] [Life stage: Adult] [TFBS]
CTCF • HepG2 NGFTBTMTPVHB63 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBTMTPVHB63 data_source Factorbook Download track Download number_of_intervals 3,232 bp_covered 96,960 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000BIE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 78,823 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW_sorted.bed.gz processed_file_md5 be109d5375e5b9377877111dcd7271ac wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF199YFA_TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 524ad0b2f503115101cb0ea67d918000 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Richard Myers, HAIB;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF199YFA;ENCODE_bigBed_id=ENCFF348BUL;PMID=34755879;Motif_sequence=TSWTRCTGYGGYCTCRCTGGTGCTKTWDTW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIE] [Life stage: Child] [TFBS]
CTCF • HepG2 NGFTBTN5ECN4O7 • Factorbook34755879 Motif finding HepG2 TFBS Show metadata Download track Track metadata identifier NGFTBTN5ECN4O7 data_source Factorbook Download track Download number_of_intervals 40,465 bp_covered 606,975 output_type transcription factor binding sites all genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR000DLS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 679,629 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF240MUS_CCACYAGRKGGCRSY_sorted.bed.gz processed_file_md5 2e1ee99c95c74a652289be778d0d1cf7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF240MUS_CCACYAGRKGGCRSY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF240MUS_CCACYAGRKGGCRSY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF240MUS_CCACYAGRKGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF240MUS_CCACYAGRKGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bd311060b8f089e55cd7597a6f85ea9c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HepG2;Original_cell_type=HepG2;Lab=Vishwanath Iyer, UTA;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF240MUS;ENCODE_bigBed_id=ENCFF668CTD;PMID=34755879;Motif_sequence=CCACYAGRKGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name Factorbook HepG2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLS] [Life stage: Child] [TFBS]
CTCF • Transverse colon NGFTBTNGCQKC4G • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTBTNGCQKC4G data_source Factorbook Download track Download number_of_intervals 11,572 bp_covered 127,292 output_type transcription factor binding sites all genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR102CSD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 143,350 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_GGAACTGCAGS_sorted.bed.gz processed_file_md5 6e2cc693dd5d7663647abc705b8281f2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF292GYB_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF292GYB_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF292GYB_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bb17348c13305912ac7a7f081de91c10 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue male adult (37 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF292GYB;ENCODE_bigBed_id=ENCFF749DPF;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR102CSD] [Life stage: Adult] [TFBS]
CTCF • HeLa-S3 NGFTBTO2BSFD66 • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBTO2BSFD66 data_source Factorbook Download track Download number_of_intervals 7,653 bp_covered 84,183 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000DLO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 109,715 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF548ARU_CACTGCAGCWD_sorted.bed.gz processed_file_md5 07f9933a377d9cd8cad2bf63ee3cdcdf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF548ARU_CACTGCAGCWD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF548ARU_CACTGCAGCWD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF548ARU_CACTGCAGCWD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF548ARU_CACTGCAGCWD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be8ad10484dfbe24300633fcefc704ab data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Vishwanath Iyer, UTA;System=reproductive system;ENCODE_BED_id=ENCFF548ARU;ENCODE_bigBed_id=ENCFF565UFR;PMID=34755879;Motif_sequence=CACTGCAGCWD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLO] [Life stage: Adult] [TFBS]
CTCF • Prostate gland NGFTBTPAF3OKHH • Factorbook34755879 Motif finding Prostate gland TFBS Show metadata Download track Track metadata identifier NGFTBTPAF3OKHH data_source Factorbook Download track Download number_of_intervals 43,381 bp_covered 650,715 output_type transcription factor binding sites all genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR829HTO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 750,017 downloaded_date 07/10/2024 release_date 11/29/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_GCCRCCAGRGGGCGS_sorted.bed.gz processed_file_md5 70d33aac13eb3b381eb0496a85a9f746 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_GCCRCCAGRGGGCGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF771ZYH_GCCRCCAGRGGGCGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF771ZYH_GCCRCCAGRGGGCGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF771ZYH_GCCRCCAGRGGGCGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ac36966508e9ce0f7a68a3ed071177a7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens prostate gland tissue male adult (54 years);Original_cell_type=prostate gland;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF771ZYH;ENCODE_bigBed_id=ENCFF655GBO;PMID=34755879;Motif_sequence=GCCRCCAGRGGGCGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Prostate gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR829HTO] [Life stage: Adult] [TFBS]
CTCF • K562 NGFTBTRZW5FF4A • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBTRZW5FF4A data_source Factorbook Download track Download number_of_intervals 4,536 bp_covered 136,080 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BPJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 108,401 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST_sorted.bed.gz processed_file_md5 21d418460d98522d2c925be707307f6a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF582SNT_TGTCTGTGRTACTGCAGHCTCBCTGGTGST.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f6a22e228b6667e9f68d64f0a183386a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF582SNT;ENCODE_bigBed_id=ENCFF111MGE;PMID=34755879;Motif_sequence=TGTCTGTGRTACTGCAGHCTCBCTGGTGST;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPJ] [Life stage: Adult] [TFBS]
CTCF • Skin NGFTBTSZ7WCDGN • Factorbook34755879 Motif finding Skin TFBS Show metadata Download track Track metadata identifier NGFTBTSZ7WCDGN data_source Factorbook Download track Download number_of_intervals 76 bp_covered 1,140 output_type transcription factor binding sites significant genome_build hg38 cell_type Skin biosample_type Tissue biosample_term_id UBERON:0002097 tissue_category Skin encode_experiment_id ENCSR756KRS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,112 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF147HSY_CCACCAGRKGGCRSY_filtered.bed.gz processed_file_md5 0cef3a92ef842f81facba5d6c7cb3c99 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF147HSY_CCACCAGRKGGCRSY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF147HSY_CCACCAGRKGGCRSY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF147HSY_CCACCAGRKGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF147HSY_CCACCAGRKGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a76127daece7b7473d3c666e082b9cad data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens suprapubic skin tissue female adult (51 years);Original_cell_type=suprapubic skin;Lab=Michael Snyder, Stanford;System=integumental system;ENCODE_BED_id=ENCFF147HSY;ENCODE_bigBed_id=ENCFF198TWE;PMID=34755879;Motif_sequence=CCACCAGRKGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0036149;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Skin (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR756KRS] [Life stage: Adult] [TFBS]
CTCF • SK-N-SH NGFTBTTBZVSEDK • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBTTBZVSEDK data_source Factorbook Download track Download number_of_intervals 43,938 bp_covered 659,070 output_type transcription factor binding sites all genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000EIC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 759,518 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_RRCCASYAGGKGGCR_sorted.bed.gz processed_file_md5 8f59500a55f68c7f4ff81c0cbd66d16c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_RRCCASYAGGKGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF608JKY_RRCCASYAGGKGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF608JKY_RRCCASYAGGKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF608JKY_RRCCASYAGGKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a62e4823d5bc6b04122b9ab74e5ac346 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH;Original_cell_type=SK-N-SH;Lab=Michael Snyder, Stanford;System=central nervous system;ENCODE_BED_id=ENCFF608JKY;ENCODE_bigBed_id=ENCFF731NJX;PMID=34755879;Motif_sequence=RRCCASYAGGKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EIC] [Life stage: Child] [TFBS]
CTCF • Thyroid gland NGFTBTURAAVSKZ • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBTURAAVSKZ data_source Factorbook Download track Download number_of_intervals 30,070 bp_covered 841,960 output_type transcription factor binding sites all genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR744YJR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 692,425 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD_sorted.bed.gz processed_file_md5 2e45bccf9112202eee2bc92c10957f62 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF498GQK_RGCGCCCYCTDSTGGCCRNNVNGGGVAD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 65782fecee53a7f64aed30e31de48128 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue female adult (53 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF498GQK;ENCODE_bigBed_id=ENCFF748ICQ;PMID=34755879;Motif_sequence=RGCGCCCYCTDSTGGCCRNNVNGGGVAD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR744YJR] [Life stage: Adult] [TFBS]
CTCF • Lung NGFTBTW3466UJD • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTBTW3466UJD data_source Factorbook Download track Download number_of_intervals 3,710 bp_covered 70,490 output_type transcription factor binding sites all genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR000DMH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 73,068 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF263REK_WHKBBGGWACTGCAGCCNH_sorted.bed.gz processed_file_md5 78a3019c8c9c814b25f79f36e9b0ad44 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF263REK_WHKBBGGWACTGCAGCCNH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF263REK_WHKBBGGWACTGCAGCCNH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF263REK_WHKBBGGWACTGCAGCCNH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF263REK_WHKBBGGWACTGCAGCCNH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6ec8ddfbdb5c2ca8d84a3f998c2b8f84 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens lung tissue male adult (27 years) and male adult (35 years);Original_cell_type=lung;Lab=Vishwanath Iyer, UTA;System=respiratory system;ENCODE_BED_id=ENCFF263REK;ENCODE_bigBed_id=ENCFF782RBX;PMID=34755879;Motif_sequence=WHKBBGGWACTGCAGCCNH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002048;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMH] [Life stage: Adult] [TFBS]