CTCF • Uterus NGFTBTWCQDSNTB • Factorbook34755879 Motif finding Uterus TFBS Show metadata Download track Track metadata identifier NGFTBTWCQDSNTB data_source Factorbook Download track Download number_of_intervals 14,625 bp_covered 424,125 output_type transcription factor binding sites all genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id ENCSR798NVH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 345,651 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_CCMTCTGGTGGCCAVTKMKGGWAGNDCAK_sorted.bed.gz processed_file_md5 a6747c28256c7a63d3f8c97c836e336a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_CCMTCTGGTGGCCAVTKMKGGWAGNDCAK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_CCMTCTGGTGGCCAVTKMKGGWAGNDCAK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF421VTZ_CCMTCTGGTGGCCAVTKMKGGWAGNDCAK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF421VTZ_CCMTCTGGTGGCCAVTKMKGGWAGNDCAK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d6854983cba7c9708780d331ff976de9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens uterus tissue female adult (51 years);Original_cell_type=uterus;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF421VTZ;ENCODE_bigBed_id=ENCFF631BWF;PMID=34755879;Motif_sequence=CCMTCTGGTGGCCAVTKMKGGWAGNDCAK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000995;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Uterus (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR798NVH] [Life stage: Adult] [TFBS]
CTCF • AG04449 NGFTBTY5PPFDBM • Factorbook34755879 Motif finding AG04449 TFBS Show metadata Download track Track metadata identifier NGFTBTY5PPFDBM data_source Factorbook Download track Download number_of_intervals 120 bp_covered 1,800 output_type transcription factor binding sites significant genome_build hg38 cell_type AG04449 biosample_type Cell line biosample_term_id CLO:0034837 tissue_category Skin encode_experiment_id ENCSR000DPG biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,546 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF958ABF_GCCMYCTGSTGGNMR_filtered.bed.gz processed_file_md5 e54614427099a121f397c51bcb4d0cb0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF958ABF_GCCMYCTGSTGGNMR_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF958ABF_GCCMYCTGSTGGNMR_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF958ABF_GCCMYCTGSTGGNMR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF958ABF_GCCMYCTGSTGGNMR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 284d6751894a104426d87b69467f9457 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG04449;Original_cell_type=AG04449;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF958ABF;ENCODE_bigBed_id=ENCFF814JIR;PMID=34755879;Motif_sequence=GCCMYCTGSTGGNMR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0034837;is_hg38_lifted=no system_category Integumentary life_stage Embryonic track_name Factorbook AG04449 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPG] [Life stage: Embryonic] [TFBS]
CTCF • Omental fat pad NGFTBTYGIY5PDY • Factorbook34755879 Motif finding Omental fat pad TFBS Show metadata Download track Track metadata identifier NGFTBTYGIY5PDY data_source Factorbook Download track Download number_of_intervals 2,561 bp_covered 38,415 output_type transcription factor binding sites all genome_build hg38 cell_type Omental fat pad biosample_type Tissue biosample_term_id UBERON:0010414 tissue_category Adipose encode_experiment_id ENCSR225OKX biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 45,165 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF464DDN_TKNGGWACTGCAGCC_sorted.bed.gz processed_file_md5 8f956f503aa275a272268155d59fde48 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF464DDN_TKNGGWACTGCAGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF464DDN_TKNGGWACTGCAGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF464DDN_TKNGGWACTGCAGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF464DDN_TKNGGWACTGCAGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2a867377e604cd0a866ac4524f7dcfef data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens omental fat pad tissue female adult (51 years);Original_cell_type=omental fat pad;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF464DDN;ENCODE_bigBed_id=ENCFF461YDT;PMID=34755879;Motif_sequence=TKNGGWACTGCAGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0010414;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Omental fat pad (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR225OKX] [Life stage: Adult] [TFBS]
CTCF • Bipolar neuron NGFTBTYNK5YKFD • Factorbook34755879 Motif finding Bipolar neuron TFBS Show metadata Download track Track metadata identifier NGFTBTYNK5YKFD data_source Factorbook Download track Download number_of_intervals 2,713 bp_covered 81,390 output_type transcription factor binding sites all genome_build hg38 cell_type Bipolar neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000103 tissue_category Brain encode_experiment_id ENCSR619IUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 67,915 downloaded_date 07/10/2024 release_date 10/27/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF424MLS_CATTRCAGGVWRTTYAGCWSCATYCYTGGC_sorted.bed.gz processed_file_md5 bc5f97e8eb8edecec94dc909322e3eee wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF424MLS_CATTRCAGGVWRTTYAGCWSCATYCYTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF424MLS_CATTRCAGGVWRTTYAGCWSCATYCYTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF424MLS_CATTRCAGGVWRTTYAGCWSCATYCYTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF424MLS_CATTRCAGGVWRTTYAGCWSCATYCYTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1a6085da6d0c22352b236f230fe986a1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens bipolar neuron originated from GM23338 treated with 0.5 _g/mL doxycycline hyclate for 4 days;Original_cell_type=bipolar neuron;Lab=Richard Myers, HAIB;System=central nervous system;ENCODE_BED_id=ENCFF424MLS;ENCODE_bigBed_id=ENCFF212OJX;PMID=34755879;Motif_sequence=CATTRCAGGVWRTTYAGCWSCATYCYTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000103;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Bipolar neuron (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR619IUE] [Life stage: Adult] [TFBS]
CTCF • K562 NGFTBU3BWT7ERA • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBU3BWT7ERA data_source Factorbook Download track Download number_of_intervals 47,910 bp_covered 718,650 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DMA biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 836,793 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF740TLU_GCCACYAGRKGGCRS_sorted.bed.gz processed_file_md5 e322e3c3f03d203ea21bb2f58a22009b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF740TLU_GCCACYAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF740TLU_GCCACYAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF740TLU_GCCACYAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF740TLU_GCCACYAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 306733703f03201cb2c79d0ab3a50ded data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF740TLU;ENCODE_bigBed_id=ENCFF302CGQ;PMID=34755879;Motif_sequence=GCCACYAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMA] [Life stage: Adult] [TFBS]
CTCF • Transverse colon NGFTBU3JYCBSFV • Factorbook34755879 Motif finding Transverse colon TFBS Show metadata Download track Track metadata identifier NGFTBU3JYCBSFV data_source Factorbook Download track Download number_of_intervals 84 bp_covered 1,260 output_type transcription factor binding sites significant genome_build hg38 cell_type Transverse colon biosample_type Tissue biosample_term_id UBERON:0001157 tissue_category Digestive encode_experiment_id ENCSR102CSD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,062 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF292GYB_SCGCCCCCTGGTGGC_filtered.bed.gz processed_file_md5 85624a8e3c82e3aaf709b739991a8918 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF292GYB_SCGCCCCCTGGTGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF292GYB_SCGCCCCCTGGTGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF292GYB_SCGCCCCCTGGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF292GYB_SCGCCCCCTGGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f421d1b21b7cdddcb86f9dd729293b7f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens transverse colon tissue male adult (37 years);Original_cell_type=transverse colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF292GYB;ENCODE_bigBed_id=ENCFF749DPF;PMID=34755879;Motif_sequence=SCGCCCCCTGGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001157;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Transverse colon (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR102CSD] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTBU5OFK34XG • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBU5OFK34XG data_source Factorbook Download track Download number_of_intervals 14,303 bp_covered 400,484 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR003SZZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 332,640 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_TYCCVSATTTSACCASCAGGKGGCAGCR_sorted.bed.gz processed_file_md5 8b628a1f1b000c4965c6c1d194b70897 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_TYCCVSATTTSACCASCAGGKGGCAGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF523MWC_TYCCVSATTTSACCASCAGGKGGCAGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF523MWC_TYCCVSATTTSACCASCAGGKGGCAGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF523MWC_TYCCVSATTTSACCASCAGGKGGCAGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 75c1bbb26ecab04535e337279f0f0710 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (51 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF523MWC;ENCODE_bigBed_id=ENCFF571ODZ;PMID=34755879;Motif_sequence=TYCCVSATTTSACCASCAGGKGGCAGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR003SZZ] [Life stage: Adult] [TFBS]
CTCF • Gastroesophageal sphincter NGFTBU6J7U34ZU • Factorbook34755879 Motif finding Gastroesophageal sphincter TFBS Show metadata Download track Track metadata identifier NGFTBU6J7U34ZU data_source Factorbook Download track Download number_of_intervals 15,894 bp_covered 174,834 output_type transcription factor binding sites all genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR206ETG biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 205,324 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF950ZID_DGGRRCWGCAG_sorted.bed.gz processed_file_md5 189c5dd432f78192ba615327b608f6a0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF950ZID_DGGRRCWGCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF950ZID_DGGRRCWGCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF950ZID_DGGRRCWGCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF950ZID_DGGRRCWGCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4869f4aa6557ab2dd17a3cf3ac1e039a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue female adult (53 years);Original_cell_type=gastroesophageal sphincter;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF950ZID;ENCODE_bigBed_id=ENCFF546QIK;PMID=34755879;Motif_sequence=DGGRRCWGCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Gastroesophageal sphincter (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR206ETG] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTBU7PUWZKFZ • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBU7PUWZKFZ data_source Factorbook Download track Download number_of_intervals 394 bp_covered 5,910 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id ENCSR304XUZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,744 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF910ACN_GCCACCAGGKGGCRS_filtered.bed.gz processed_file_md5 6cd139f53540af055246966e40d10196 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF910ACN_GCCACCAGGKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF910ACN_GCCACCAGGKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF910ACN_GCCACCAGGKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF910ACN_GCCACCAGGKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b675c1a80ab4baa23442d1f87c086f31 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens breast epithelium tissue female adult (53 years);Original_cell_type=breast epithelium;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF910ACN;ENCODE_bigBed_id=ENCFF277RMX;PMID=34755879;Motif_sequence=GCCACCAGGKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR304XUZ] [Life stage: Adult] [TFBS]
CTCF • Left ventricle NGFTBUA4OGIYAE • Factorbook34755879 Motif finding Left ventricle TFBS Show metadata Download track Track metadata identifier NGFTBUA4OGIYAE data_source Factorbook Download track Download number_of_intervals 447 bp_covered 7,599 output_type transcription factor binding sites significant genome_build hg38 cell_type Left ventricle biosample_type Tissue biosample_term_id UBERON:0002084 tissue_category Heart encode_experiment_id ENCSR544APK biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,035 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165RCX_RSYGCCMYCTGGYGGCC_filtered.bed.gz processed_file_md5 57ee0076c29f83099a379eca95aeabfa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165RCX_RSYGCCMYCTGGYGGCC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF165RCX_RSYGCCMYCTGGYGGCC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF165RCX_RSYGCCMYCTGGYGGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF165RCX_RSYGCCMYCTGGYGGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a555ca2a31cf9d912b84bc05c6606abe data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens heart left ventricle tissue female adult (53 years);Original_cell_type=heart left ventricle;Lab=Michael Snyder, Stanford;System=circulatory system;ENCODE_BED_id=ENCFF165RCX;ENCODE_bigBed_id=ENCFF185CKY;PMID=34755879;Motif_sequence=RSYGCCMYCTGGYGGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002084;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook Left ventricle (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR544APK] [Life stage: Adult] [TFBS]
CTCF • HEK293 NGFTBUAG4MAFWN • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBUAG4MAFWN data_source Factorbook Download track Download number_of_intervals 60,803 bp_covered 1,216,060 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR617IFZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,097,041 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF521EHU_VBRGCGCCCCCTGSYGGCSR_sorted.bed.gz processed_file_md5 d1d561954c6e04cb99fb89949f5a9dc4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF521EHU_VBRGCGCCCCCTGSYGGCSR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF521EHU_VBRGCGCCCCCTGSYGGCSR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF521EHU_VBRGCGCCCCCTGSYGGCSR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF521EHU_VBRGCGCCCCCTGSYGGCSR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a8a74e670cbf9115a4a0a8a01609f6c9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF521EHU;ENCODE_bigBed_id=ENCFF821TIC;PMID=34755879;Motif_sequence=VBRGCGCCCCCTGSYGGCSR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR617IFZ] [TFBS]
CTCF • A549 NGFTBUBF7SXBVP • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBUBF7SXBVP data_source Factorbook Download track Download number_of_intervals 426 bp_covered 8,094 output_type transcription factor binding sites significant genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000AUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,355 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC_filtered.bed.gz processed_file_md5 6c38f12a628e619230cfec16516951db wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF977ZIK_VBRGYGCCMYCTRGTGGYC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 89805e6b8ae2dffdfb4a7195d0ea82cb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Bradley Bernstein, Broad;System=respiratory system;ENCODE_BED_id=ENCFF977ZIK;ENCODE_bigBed_id=ENCFF889NGM;PMID=34755879;Motif_sequence=VBRGYGCCMYCTRGTGGYC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUE] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBUCOMLDU2M • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBUCOMLDU2M data_source Factorbook Download track Download number_of_intervals 42,375 bp_covered 635,625 output_type transcription factor binding sites all genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DVP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 711,069 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF825TEN_YGGCCRCCAGRGGGC_sorted.bed.gz processed_file_md5 ecdf4e316294e8debd32352765d08e5a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF825TEN_YGGCCRCCAGRGGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF825TEN_YGGCCRCCAGRGGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF825TEN_YGGCCRCCAGRGGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF825TEN_YGGCCRCCAGRGGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 941980c51e1e5dca5569890322df73df data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=John Stamatoyannopoulos, UW;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF825TEN;ENCODE_bigBed_id=ENCFF677IZD;PMID=34755879;Motif_sequence=YGGCCRCCAGRGGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVP] [TFBS]
CTCF • Epithelium NGFTBUDJRCNA6K • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBUDJRCNA6K data_source Factorbook Download track Download number_of_intervals 611 bp_covered 11,609 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Breast encode_experiment_id ENCSR697YIN biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,620 downloaded_date 07/10/2024 release_date 02/08/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF758FTM_CCACCAGGGGGCRSYVBVG_filtered.bed.gz processed_file_md5 42fe0af83476fd53aa5197a8533f458f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF758FTM_CCACCAGGGGGCRSYVBVG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF758FTM_CCACCAGGGGGCRSYVBVG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF758FTM_CCACCAGGGGGCRSYVBVG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF758FTM_CCACCAGGGGGCRSYVBVG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f0f9d2ed35ccdf060cce7215e25ebd71 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens breast epithelium tissue male adult (54 years);Original_cell_type=breast epithelium;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF758FTM;ENCODE_bigBed_id=ENCFF341QWO;PMID=34755879;Motif_sequence=CCACCAGGGGGCRSYVBVG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Epithelium (repl. 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR697YIN] [Life stage: Adult] [TFBS]
CTCF • Pancreas NGFTBUDYZ3LKOT • Factorbook34755879 Motif finding Pancreas TFBS Show metadata Download track Track metadata identifier NGFTBUDYZ3LKOT data_source Factorbook Download track Download number_of_intervals 24,707 bp_covered 518,847 output_type transcription factor binding sites all genome_build hg38 cell_type Pancreas biosample_type Tissue biosample_term_id UBERON:0001264 tissue_category Pancreas encode_experiment_id ENCSR484DDO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 493,661 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_KCHRCAGCGCCCCCTGBYGGC_sorted.bed.gz processed_file_md5 ea6e695b8eccb847f89f165820d6823f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_KCHRCAGCGCCCCCTGBYGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF061ZXI_KCHRCAGCGCCCCCTGBYGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF061ZXI_KCHRCAGCGCCCCCTGBYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF061ZXI_KCHRCAGCGCCCCCTGBYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1c3ec016fefd694247703c70c6e30e89 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens body of pancreas tissue female adult (53 years);Original_cell_type=body of pancreas;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF061ZXI;ENCODE_bigBed_id=ENCFF881RGF;PMID=34755879;Motif_sequence=KCHRCAGCGCCCCCTGBYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001150;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Pancreas (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR484DDO] [Life stage: Adult] [TFBS]
CTCF • RWPE2 NGFTBUGHZUJT7A • Factorbook34755879 Motif finding RWPE2 TFBS Show metadata Download track Track metadata identifier NGFTBUGHZUJT7A data_source Factorbook Download track Download number_of_intervals 65,309 bp_covered 979,635 output_type transcription factor binding sites all genome_build hg38 cell_type RWPE2 biosample_type Cell line biosample_term_id EFO:0007610 tissue_category Male Reproductive encode_experiment_id ENCSR856JJB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 700,162 downloaded_date 07/10/2024 release_date 07/21/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541KUT_SYGCCMYCTRSTGGC_sorted.bed.gz processed_file_md5 52fda2f81c93ee977813cadd32c3bd12 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541KUT_SYGCCMYCTRSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF541KUT_SYGCCMYCTRSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF541KUT_SYGCCMYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF541KUT_SYGCCMYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 42d3aba09d3e30a3d665f5ebbc5c5786 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens RWPE2;Original_cell_type=RWPE2;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF541KUT;ENCODE_bigBed_id=ENCFF604JNO;PMID=34755879;Motif_sequence=SYGCCMYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007610;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook RWPE2 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR856JJB] [Life stage: Adult] [TFBS]
CTCF • Tibial nerve NGFTBUHFTAKEQX • Factorbook34755879 Motif finding Tibial nerve TFBS Show metadata Download track Track metadata identifier NGFTBUHFTAKEQX data_source Factorbook Download track Download number_of_intervals 11,757 bp_covered 129,327 output_type transcription factor binding sites all genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR469POZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 147,033 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF831KJJ_GGAACTGCAGS_sorted.bed.gz processed_file_md5 b4599308efbe1765f80b8c7abed5667c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF831KJJ_GGAACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF831KJJ_GGAACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF831KJJ_GGAACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF831KJJ_GGAACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eea18e23f11a5f27cda71611f4f3e0f3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens tibial nerve tissue female adult (53 years);Original_cell_type=tibial nerve;Lab=Michael Snyder, Stanford;System=peripheral nervous system;ENCODE_BED_id=ENCFF831KJJ;ENCODE_bigBed_id=ENCFF477JAK;PMID=34755879;Motif_sequence=GGAACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Tibial nerve (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR469POZ] [Life stage: Adult] [TFBS]
CTCF • Osteoblast NGFTBUHKJUNGIJ • Factorbook34755879 Motif finding Osteoblast TFBS Show metadata Download track Track metadata identifier NGFTBUHKJUNGIJ data_source Factorbook Download track Download number_of_intervals 15,154 bp_covered 227,310 output_type transcription factor binding sites all genome_build hg38 cell_type Osteoblast biosample_type Primary cell biosample_term_id CL:0000062 tissue_category Bone encode_experiment_id ENCSR000APF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 241,921 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF183VNT_KKNGGHACTGCAGSC_sorted.bed.gz processed_file_md5 19ad2399f98220010010f04b3f52cb0c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF183VNT_KKNGGHACTGCAGSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF183VNT_KKNGGHACTGCAGSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF183VNT_KKNGGHACTGCAGSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF183VNT_KKNGGHACTGCAGSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4dc443d173ef38f33d67691c2475d513 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens osteoblast;Original_cell_type=osteoblast;Lab=Bradley Bernstein, Broad;System=skeletal system;ENCODE_BED_id=ENCFF183VNT;ENCODE_bigBed_id=ENCFF491ZJZ;PMID=34755879;Motif_sequence=KKNGGHACTGCAGSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000062;is_hg38_lifted=no system_category Skeletal life_stage Unknown track_name Factorbook Osteoblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000APF] [TFBS]
CTCF • Tibial nerve NGFTBUHNUQMYLL • Factorbook34755879 Motif finding Tibial nerve TFBS Show metadata Download track Track metadata identifier NGFTBUHNUQMYLL data_source Factorbook Download track Download number_of_intervals 13 bp_covered 273 output_type transcription factor binding sites significant genome_build hg38 cell_type Tibial nerve biosample_type Tissue biosample_term_id UBERON:0001323 tissue_category Nervous encode_experiment_id ENCSR434XLP biological_replicate 2 technical_replicate 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 577 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF144XGH_GKGMAACAGCGCCHCCTGSYG_filtered.bed.gz processed_file_md5 4478f622cb885cc41020fca314c5974d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF144XGH_GKGMAACAGCGCCHCCTGSYG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF144XGH_GKGMAACAGCGCCHCCTGSYG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF144XGH_GKGMAACAGCGCCHCCTGSYG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF144XGH_GKGMAACAGCGCCHCCTGSYG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4d0981a4e15939f54463b9312cfcfa55 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens tibial nerve tissue male adult (37 years);Original_cell_type=tibial nerve;Lab=Michael Snyder, Stanford;System=peripheral nervous system;ENCODE_BED_id=ENCFF144XGH;ENCODE_bigBed_id=ENCFF857SLT;PMID=34755879;Motif_sequence=GKGMAACAGCGCCHCCTGSYG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001323;is_hg38_lifted=no system_category Nervous life_stage Adult track_name Factorbook Tibial nerve (repl. 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR434XLP] [Life stage: Adult] [TFBS]
CTCF • LNCaP clone FGC NGFTBUIGUWNY46 • Factorbook34755879 Motif finding LNCaP clone FGC TFBS Show metadata Download track Track metadata identifier NGFTBUIGUWNY46 data_source Factorbook Download track Download number_of_intervals 367 bp_covered 5,505 output_type transcription factor binding sites significant genome_build hg38 cell_type LNCaP clone FGC biosample_type Cell line biosample_term_id EFO:0005726 tissue_category Male Reproductive encode_experiment_id ENCSR000DME biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,414 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF229ROH_GCCASYAGRKGGCGC_filtered.bed.gz processed_file_md5 01c90bcb68a7c0570077ef3265dca2c7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF229ROH_GCCASYAGRKGGCGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF229ROH_GCCASYAGRKGGCGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF229ROH_GCCASYAGRKGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF229ROH_GCCASYAGRKGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 aa07466ee1cd6cc01bbe3f55cee4633a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCaP clone FGC treated with 1 nM 17_-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours;Original_cell_type=LNCaP clone FGC;Lab=Vishwanath Iyer, UTA;System=reproductive system;ENCODE_BED_id=ENCFF229ROH;ENCODE_bigBed_id=ENCFF855VBR;PMID=34755879;Motif_sequence=GCCASYAGRKGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005726;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCaP clone FGC (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DME] [Life stage: Adult] [TFBS]