CTCF • Peyers patch NGFTBV2JEM5FJW • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBV2JEM5FJW data_source Factorbook Download track Download number_of_intervals 259 bp_covered 7,770 output_type transcription factor binding sites significant genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR799WDT biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 6,127 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC_filtered.bed.gz processed_file_md5 9aab6b548757c486c7b4d6fc95081336 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF320DPI_CCMCCTRGTGGCYANDNNDGGAAYTGCASC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8f10b366d13af1d218f768fb3a8cfa87 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (54 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF320DPI;ENCODE_bigBed_id=ENCFF828IDE;PMID=34755879;Motif_sequence=CCMCCTRGTGGCYANDNNDGGAAYTGCASC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR799WDT] [Life stage: Adult] [TFBS]
CTCF • D721 Med NGFTBV33V2TJ6X • Factorbook34755879 Motif finding D721 Med TFBS Show metadata Download track Track metadata identifier NGFTBV33V2TJ6X data_source Factorbook Download track Download number_of_intervals 6,403 bp_covered 70,433 output_type transcription factor binding sites all genome_build hg38 cell_type D721 Med biosample_type Cell line biosample_term_id EFO:0005696 tissue_category Brain encode_experiment_id ENCSR000DMY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 95,288 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF364SUA_CTGCAGTTYCV_sorted.bed.gz processed_file_md5 f0ca184816ad937f9bc51b44f71f4004 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF364SUA_CTGCAGTTYCV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF364SUA_CTGCAGTTYCV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF364SUA_CTGCAGTTYCV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF364SUA_CTGCAGTTYCV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 57eb964deb51a0168b711b757286e78c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens D721Med;Original_cell_type=D721Med;Lab=Vishwanath Iyer, UTA;System=central nervous system;ENCODE_BED_id=ENCFF364SUA;ENCODE_bigBed_id=ENCFF513FYD;PMID=34755879;Motif_sequence=CTGCAGTTYCV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005696;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook D721 Med (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMY] [Life stage: Child] [TFBS]
CTCF • GM23338 NGFTBV5HID54EW • Factorbook34755879 Motif finding GM23338 TFBS Show metadata Download track Track metadata identifier NGFTBV5HID54EW data_source Factorbook Download track Download number_of_intervals 14,514 bp_covered 217,710 output_type transcription factor binding sites all genome_build hg38 cell_type GM23338 biosample_type Induced pluripotent stem cell line biosample_term_id EFO:0007950 tissue_category iPSC encode_experiment_id ENCSR932ZMX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 247,118 downloaded_date 07/10/2024 release_date 06/30/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226HZI_RARGSAVCAGCAGWG_sorted.bed.gz processed_file_md5 20f5657007bffb2447f7e01f8ce3eefa wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226HZI_RARGSAVCAGCAGWG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF226HZI_RARGSAVCAGCAGWG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF226HZI_RARGSAVCAGCAGWG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF226HZI_RARGSAVCAGCAGWG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9fca711f03e707f034d34c2853e2d9eb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM23338 originated from GM23248;Original_cell_type=GM23338;Lab=Richard Myers, HAIB;System=integumental system;ENCODE_BED_id=ENCFF226HZI;ENCODE_bigBed_id=ENCFF410SQA;PMID=34755879;Motif_sequence=RARGSAVCAGCAGWG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007950;is_hg38_lifted=no system_category Stem Cell life_stage Adult track_name Factorbook GM23338 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR932ZMX] [Life stage: Adult] [TFBS]
CTCF • IMR-90 NGFTBV5LRHBAPD • Factorbook34755879 Motif finding IMR-90 TFBS Show metadata Download track Track metadata identifier NGFTBV5LRHBAPD data_source Factorbook Download track Download number_of_intervals 313 bp_covered 4,695 output_type transcription factor binding sites significant genome_build hg38 cell_type IMR-90 biosample_type Cell line biosample_term_id EFO:0001196 tissue_category Lung encode_experiment_id ENCSR000EFI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,526 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF670ULH_GCGCCCYCTRSTGGY_filtered.bed.gz processed_file_md5 913fc3933effa6a3360c218a44afd439 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF670ULH_GCGCCCYCTRSTGGY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF670ULH_GCGCCCYCTRSTGGY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF670ULH_GCGCCCYCTRSTGGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF670ULH_GCGCCCYCTRSTGGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7ba1a39e854b2b402bfa910df7a1549d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens IMR-90;Original_cell_type=IMR-90;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF670ULH;ENCODE_bigBed_id=ENCFF804WIR;PMID=34755879;Motif_sequence=GCGCCCYCTRSTGGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001196;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name Factorbook IMR-90 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000EFI] [Life stage: Embryonic] [TFBS]
CTCF • GM12878 NGFTBV5RXOKQWL • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBV5RXOKQWL data_source Factorbook Download track Download number_of_intervals 98 bp_covered 2,058 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AKB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,547 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF797SDL_TGAGCGCCCCCTGGTGKBCHK_filtered.bed.gz processed_file_md5 1ed22c10988db07f72dcbdde49861735 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF797SDL_TGAGCGCCCCCTGGTGKBCHK_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF797SDL_TGAGCGCCCCCTGGTGKBCHK_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF797SDL_TGAGCGCCCCCTGGTGKBCHK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF797SDL_TGAGCGCCCCCTGGTGKBCHK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0db6dbdf578e803ee31e2f65ac43da17 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF797SDL;ENCODE_bigBed_id=ENCFF217EAX;PMID=34755879;Motif_sequence=TGAGCGCCCCCTGGTGKBCHK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKB] [TFBS]
CTCF • AG10803 NGFTBV7ZZVYQG6 • Factorbook34755879 Motif finding AG10803 TFBS Show metadata Download track Track metadata identifier NGFTBV7ZZVYQG6 data_source Factorbook Download track Download number_of_intervals 6,311 bp_covered 94,665 output_type transcription factor binding sites all genome_build hg38 cell_type AG10803 biosample_type Cell line biosample_term_id CLO:0021511 tissue_category Skin encode_experiment_id ENCSR000DPV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 106,908 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_KCAGCARCAGVARCA_sorted.bed.gz processed_file_md5 ac3ab126a7f14a631a2f5b2f32666177 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_KCAGCARCAGVARCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF912KWD_KCAGCARCAGVARCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF912KWD_KCAGCARCAGVARCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF912KWD_KCAGCARCAGVARCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 aac53a9622c08022a9dbc8cd78d9322b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG10803;Original_cell_type=AG10803;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF912KWD;ENCODE_bigBed_id=ENCFF550SXU;PMID=34755879;Motif_sequence=KCAGCARCAGVARCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CLO:0021511;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook AG10803 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPV] [Life stage: Adult] [TFBS]
CTCF • Adrenal gland NGFTBVAZDPBLR3 • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBVAZDPBLR3 data_source Factorbook Download track Download number_of_intervals 17,792 bp_covered 373,632 output_type transcription factor binding sites all genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR014GSQ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 353,959 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR_sorted.bed.gz processed_file_md5 06a3ac2dc5ba2d819e84bb56321bab0d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF969MVE_SCAGGGGGCGCTGCWGMSMCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 87bf1527df3e545f04df71978f8da359 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (51 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF969MVE;ENCODE_bigBed_id=ENCFF282ZUL;PMID=34755879;Motif_sequence=SCAGGGGGCGCTGCWGMSMCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR014GSQ] [Life stage: Adult] [TFBS]
CTCF • A673 NGFTBVEA5LIMX4 • Factorbook34755879 Motif finding A673 TFBS Show metadata Download track Track metadata identifier NGFTBVEA5LIMX4 data_source Factorbook Download track Download number_of_intervals 6,951 bp_covered 104,265 output_type transcription factor binding sites all genome_build hg38 cell_type A673 biosample_type Cell line biosample_term_id EFO:0002106 tissue_category Skeletal Muscle encode_experiment_id ENCSR611JJS biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 110,675 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF986OCA_AKWKGDGGAACTGCA_sorted.bed.gz processed_file_md5 a8115ee40f98a6d79ec4bd8011fd4b65 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF986OCA_AKWKGDGGAACTGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF986OCA_AKWKGDGGAACTGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF986OCA_AKWKGDGGAACTGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF986OCA_AKWKGDGGAACTGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 238a41a8781659b307d6a77001b91b28 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A673;Original_cell_type=A673;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF986OCA;ENCODE_bigBed_id=ENCFF786RXU;PMID=34755879;Motif_sequence=AKWKGDGGAACTGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002106;is_hg38_lifted=no system_category Muscular life_stage Child track_name Factorbook A673 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR611JJS] [Life stage: Child] [TFBS]
CTCF • Stomach NGFTBVEH2DAICF • Factorbook34755879 Motif finding Stomach TFBS Show metadata Download track Track metadata identifier NGFTBVEH2DAICF data_source Factorbook Download track Download number_of_intervals 29,755 bp_covered 416,570 output_type transcription factor binding sites all genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id ENCSR173AIR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 469,589 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF346IVG_GCCACYAGRKGGCR_sorted.bed.gz processed_file_md5 82527963884f1d614f8e0593833936be wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF346IVG_GCCACYAGRKGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF346IVG_GCCACYAGRKGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF346IVG_GCCACYAGRKGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF346IVG_GCCACYAGRKGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c5c328db6c83564f4bef4e6d9fe76fd6 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens stomach tissue female adult (51 years);Original_cell_type=stomach;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF346IVG;ENCODE_bigBed_id=ENCFF370OWL;PMID=34755879;Motif_sequence=GCCACYAGRKGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000945;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Stomach (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR173AIR] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBVEKNMGQIF • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBVEKNMGQIF data_source Factorbook Download track Download number_of_intervals 59,684 bp_covered 895,260 output_type transcription factor binding sites all genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Blood Vessel encode_experiment_id ENCSR000DTA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,038,902 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985NAQ_SYGCCMYCTRSTGGC_sorted.bed.gz processed_file_md5 3dfa642ff3d15d44ee2511bc25866f98 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985NAQ_SYGCCMYCTRSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF985NAQ_SYGCCMYCTRSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF985NAQ_SYGCCMYCTRSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF985NAQ_SYGCCMYCTRSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e48679e65a98a09afea9cee231dbccce data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens brain microvascular endothelial cell;Original_cell_type=brain microvascular endothelial cell;Lab=John Stamatoyannopoulos, UW;System=central nervous system,circulatory system;ENCODE_BED_id=ENCFF985NAQ;ENCODE_bigBed_id=ENCFF526VHE;PMID=34755879;Motif_sequence=SYGCCMYCTRSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:2000044;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTA] [TFBS]
CTCF • Thyroid gland NGFTBVGWGABPVM • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBVGWGABPVM data_source Factorbook Download track Download number_of_intervals 7,906 bp_covered 213,462 output_type transcription factor binding sites all genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR955BIB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 179,216 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW_sorted.bed.gz processed_file_md5 3bbbd81bf49f2766a1a763097411f643 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF728ZGC_CACCTRGTGGCYAVTTHBGGAAKHRCW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 43e66c3150723f0668f10599910278da data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue female adult (51 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF728ZGC;ENCODE_bigBed_id=ENCFF204HWS;PMID=34755879;Motif_sequence=CACCTRGTGGCYAVTTHBGGAAKHRCW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR955BIB] [Life stage: Adult] [TFBS]
CTCF • Epithelial cell NGFTBVHBKTDPKI • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBVHBKTDPKI data_source Factorbook Download track Download number_of_intervals 16 bp_covered 464 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id ENCSR000DXD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 721 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF996IMS_CARAGCCTARCATYGYRCCAGCTGGCRAA_filtered.bed.gz processed_file_md5 6e0b10bf77df4bfefe972af7c901014f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF996IMS_CARAGCCTARCATYGYRCCAGCTGGCRAA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF996IMS_CARAGCCTARCATYGYRCCAGCTGGCRAA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF996IMS_CARAGCCTARCATYGYRCCAGCTGGCRAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF996IMS_CARAGCCTARCATYGYRCCAGCTGGCRAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3978e15d2572fc78bba1d7cab9918360 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens epithelial cell of proximal tubule;Original_cell_type=epithelial cell of proximal tubule;Lab=John Stamatoyannopoulos, UW;System=excretory system;ENCODE_BED_id=ENCFF996IMS;ENCODE_bigBed_id=ENCFF708UDD;PMID=34755879;Motif_sequence=CARAGCCTARCATYGYRCCAGCTGGCRAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002306;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXD] [TFBS]
CTCF • Adrenal gland NGFTBVIFWDHU5S • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBVIFWDHU5S data_source Factorbook Download track Download number_of_intervals 743 bp_covered 15,603 output_type transcription factor binding sites significant genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR899JSO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 12,192 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG_filtered.bed.gz processed_file_md5 cee60645b9984b55f48ca6db987e6fb3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF297BQF_NRCCACYAGRKGGCRSYVBNG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c9871b0585b68974fe9a5b89a92d34ef data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue male adult (37 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF297BQF;ENCODE_bigBed_id=ENCFF596QXB;PMID=34755879;Motif_sequence=NRCCACYAGRKGGCRSYVBNG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR899JSO] [Life stage: Adult] [TFBS]
CTCF • GM12875 NGFTBVIWBL6325 • Factorbook34755879 Motif finding GM12875 TFBS Show metadata Download track Track metadata identifier NGFTBVIWBL6325 data_source Factorbook Download track Download number_of_intervals 44,712 bp_covered 670,680 output_type transcription factor binding sites all genome_build hg38 cell_type GM12875 biosample_type Cell line biosample_term_id EFO:0001162 tissue_category Blood encode_experiment_id ENCSR000DRU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 774,297 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_GCCRSCAGRGGGCGC_sorted.bed.gz processed_file_md5 b2e05fad760ef57a6ccd2bca06a07814 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_GCCRSCAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF456NUW_GCCRSCAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF456NUW_GCCRSCAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF456NUW_GCCRSCAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d4c759d9a71b3a28c4d4e14ccd6f68d8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12875;Original_cell_type=GM12875;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF456NUW;ENCODE_bigBed_id=ENCFF081UCQ;PMID=34755879;Motif_sequence=GCCRSCAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001162;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12875 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRU] [TFBS]
CTCF • Spleen NGFTBVJFXLA7NV • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBVJFXLA7NV data_source Factorbook Download track Download number_of_intervals 133 bp_covered 1,995 output_type transcription factor binding sites significant genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR028YEV biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,649 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF176ERE_GCCACCAGRGGGCGS_filtered.bed.gz processed_file_md5 24bc4d4254cc267e71aa004663157d59 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF176ERE_GCCACCAGRGGGCGS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF176ERE_GCCACCAGRGGGCGS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF176ERE_GCCACCAGRGGGCGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF176ERE_GCCACCAGRGGGCGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 22d2105d73f24c09dca513f9f45a4582 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue male adult (54 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF176ERE;ENCODE_bigBed_id=ENCFF878IYR;PMID=34755879;Motif_sequence=GCCACCAGRGGGCGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR028YEV] [Life stage: Adult] [TFBS]
CTCF • SK-N-SH NGFTBVJNT2RDMP • Factorbook34755879 Motif finding SK-N-SH TFBS Show metadata Download track Track metadata identifier NGFTBVJNT2RDMP data_source Factorbook Download track Download number_of_intervals 185 bp_covered 2,775 output_type transcription factor binding sites significant genome_build hg38 cell_type SK-N-SH biosample_type Cell line biosample_term_id EFO:0003072 tissue_category Brain encode_experiment_id ENCSR000DXQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,220 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF727JSC_RGYGCCMYCTGGTGG_filtered.bed.gz processed_file_md5 8fd6eebc4d454dfed47f712faa86c358 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF727JSC_RGYGCCMYCTGGTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF727JSC_RGYGCCMYCTGGTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF727JSC_RGYGCCMYCTGGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF727JSC_RGYGCCMYCTGGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 79a8ef4b7471afaa02bade195ac35600 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SK-N-SH treated with 6 _M all-trans-retinoic acid for 48 hours;Original_cell_type=SK-N-SH;Lab=John Stamatoyannopoulos, UW;System=central nervous system;ENCODE_BED_id=ENCFF727JSC;ENCODE_bigBed_id=ENCFF812MNO;PMID=34755879;Motif_sequence=RGYGCCMYCTGGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003072;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook SK-N-SH (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXQ] [Life stage: Child] [TFBS]
CTCF • HEK293 NGFTBVLLGA722C • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBVLLGA722C data_source Factorbook Download track Download number_of_intervals 29,366 bp_covered 440,490 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR617IFZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 475,242 downloaded_date 07/10/2024 release_date 10/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF521EHU_TGGCCAGCAGRKGGC_sorted.bed.gz processed_file_md5 713a87293f55ad0fcb34fadecbfc05a1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF521EHU_TGGCCAGCAGRKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF521EHU_TGGCCAGCAGRKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF521EHU_TGGCCAGCAGRKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF521EHU_TGGCCAGCAGRKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 26b42a671c0d9b012b673d619bc1746c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF521EHU;ENCODE_bigBed_id=ENCFF821TIC;PMID=34755879;Motif_sequence=TGGCCAGCAGRKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR617IFZ] [TFBS]
CTCF • Sigmoid colon NGFTBVLPULYA5B • Factorbook34755879 Motif finding Sigmoid colon TFBS Show metadata Download track Track metadata identifier NGFTBVLPULYA5B data_source Factorbook Download track Download number_of_intervals 6,889 bp_covered 75,779 output_type transcription factor binding sites all genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id ENCSR222SQE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 96,221 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF829XMK_GGRACTGCAGS_sorted.bed.gz processed_file_md5 d86dc9fc2be5c23efcbbbafef921d93c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF829XMK_GGRACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF829XMK_GGRACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF829XMK_GGRACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF829XMK_GGRACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ab443d9b1da8cd5201568c68f3dfbac7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens sigmoid colon tissue male adult (54 years);Original_cell_type=sigmoid colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF829XMK;ENCODE_bigBed_id=ENCFF086DZH;PMID=34755879;Motif_sequence=GGRACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Sigmoid colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR222SQE] [Life stage: Adult] [TFBS]
CTCF • Omental fat pad NGFTBVLTEDJOWB • Factorbook34755879 Motif finding Omental fat pad TFBS Show metadata Download track Track metadata identifier NGFTBVLTEDJOWB data_source Factorbook Download track Download number_of_intervals 782 bp_covered 11,730 output_type transcription factor binding sites all genome_build hg38 cell_type Omental fat pad biosample_type Tissue biosample_term_id UBERON:0010414 tissue_category Adipose encode_experiment_id ENCSR089DTY biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 14,117 downloaded_date 07/10/2024 release_date 06/23/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF354AMH_AHWHDRRGAACTGCA_sorted.bed.gz processed_file_md5 fdd2760cadc12c9b9ea242c9a0241165 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF354AMH_AHWHDRRGAACTGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF354AMH_AHWHDRRGAACTGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF354AMH_AHWHDRRGAACTGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF354AMH_AHWHDRRGAACTGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1389030b995d44b38285f2214029ef0f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens omental fat pad tissue male adult (37 years);Original_cell_type=omental fat pad;Lab=Michael Snyder, Stanford;System=NR;ENCODE_BED_id=ENCFF354AMH;ENCODE_bigBed_id=ENCFF735VKJ;PMID=34755879;Motif_sequence=AHWHDRRGAACTGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0010414;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name Factorbook Omental fat pad (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR089DTY] [Life stage: Adult] [TFBS]
CTCF • Adrenal gland NGFTBVLUWZLNSY • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBVLUWZLNSY data_source Factorbook Download track Download number_of_intervals 411 bp_covered 6,165 output_type transcription factor binding sites significant genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR770IWO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,656 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SOE_GCCASYAGRKGGCGC_filtered.bed.gz processed_file_md5 2199a5b97f184b985ce991e6c3b24644 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SOE_GCCASYAGRKGGCGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SOE_GCCASYAGRKGGCGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SOE_GCCASYAGRKGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SOE_GCCASYAGRKGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 387687f75b9197e14f169c07c456bb24 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (53 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF059SOE;ENCODE_bigBed_id=ENCFF678WUB;PMID=34755879;Motif_sequence=GCCASYAGRKGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR770IWO] [Life stage: Adult] [TFBS]