CTCF • Prostate gland NGFTBWCQW4BQBB • Factorbook34755879 Motif finding Prostate gland TFBS Show metadata Download track Track metadata identifier NGFTBWCQW4BQBB data_source Factorbook Download track Download number_of_intervals 1,124 bp_covered 23,604 output_type transcription factor binding sites significant genome_build hg38 cell_type Prostate gland biosample_type Tissue biosample_term_id UBERON:0002367 tissue_category Male Reproductive encode_experiment_id ENCSR720USO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,606 downloaded_date 07/10/2024 release_date 11/29/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG_filtered.bed.gz processed_file_md5 3c88551e343eea4b413d46f53ebe13c3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF351NKT_GGCCRCCAGGGGGCGCYVBVG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ddc8c5cdeeb39776292767974aa5da38 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens prostate gland tissue male adult (37 years);Original_cell_type=prostate gland;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF351NKT;ENCODE_bigBed_id=ENCFF979KAF;PMID=34755879;Motif_sequence=GGCCRCCAGGGGGCGCYVBVG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002367;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Prostate gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR720USO] [Life stage: Adult] [TFBS]
CTCF • Myoblast NGFTBWCSI6WY5J • Factorbook34755879 Motif finding Myoblast TFBS Show metadata Download track Track metadata identifier NGFTBWCSI6WY5J data_source Factorbook Download track Download number_of_intervals 12 bp_covered 240 output_type transcription factor binding sites significant genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 549 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF721RAM_RCCASNAGRGGGMRSHRGWK_filtered.bed.gz processed_file_md5 fcf7d84f4e6eab133248aec06a49c755 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF721RAM_RCCASNAGRGGGMRSHRGWK_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF721RAM_RCCASNAGRGGGMRSHRGWK_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF721RAM_RCCASNAGRGGGMRSHRGWK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF721RAM_RCCASNAGRGGGMRSHRGWK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d66c9e173d33333c257fc77aaa2b670f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Original_cell_type=skeletal muscle myoblast;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF721RAM;ENCODE_bigBed_id=ENCFF813BQI;PMID=34755879;Motif_sequence=RCCASNAGRGGGMRSHRGWK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000515;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Myoblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANE] [Life stage: Adult] [TFBS]
CTCF • Uterus NGFTBWD4TZRJ55 • Factorbook34755879 Motif finding Uterus TFBS Show metadata Download track Track metadata identifier NGFTBWD4TZRJ55 data_source Factorbook Download track Download number_of_intervals 21,383 bp_covered 449,043 output_type transcription factor binding sites all genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id ENCSR392SFJ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 428,088 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR_sorted.bed.gz processed_file_md5 7e922fc6d8fdb4b409a5a01ac5e882cd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF201PUR_HKYGGCCASNAGRKGGCRSYR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 80379575c015b4208495e464cac55e21 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens uterus tissue female adult (53 years);Original_cell_type=uterus;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF201PUR;ENCODE_bigBed_id=ENCFF466ZUR;PMID=34755879;Motif_sequence=HKYGGCCASNAGRKGGCRSYR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000995;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Uterus (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR392SFJ] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBWDS2IRQN6 • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBWDS2IRQN6 data_source Factorbook Download track Download number_of_intervals 26,772 bp_covered 374,808 output_type transcription factor binding sites all genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DLW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 428,000 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_RCCRCCAGRDGGCA_sorted.bed.gz processed_file_md5 b3e475b221e44207b05e4fb37b7bf2e8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_RCCRCCAGRDGGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF601VJF_RCCRCCAGRDGGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF601VJF_RCCRCCAGRDGGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF601VJF_RCCRCCAGRDGGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cb3a61479a3c9b96e2c491615d0f882a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Vishwanath Iyer, UTA;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF601VJF;ENCODE_bigBed_id=ENCFF336GRA;PMID=34755879;Motif_sequence=RCCRCCAGRDGGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLW] [TFBS]
CTCF • Uterus NGFTBWEKWII63S • Factorbook34755879 Motif finding Uterus TFBS Show metadata Download track Track metadata identifier NGFTBWEKWII63S data_source Factorbook Download track Download number_of_intervals 13,198 bp_covered 197,970 output_type transcription factor binding sites all genome_build hg38 cell_type Uterus biosample_type Tissue biosample_term_id UBERON:0000995 tissue_category Female Reproductive encode_experiment_id ENCSR798NVH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 212,146 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_GCGCAKGCGCASDCV_sorted.bed.gz processed_file_md5 87dc5e0ce8d5f82a35562e66f890c7ba wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_GCGCAKGCGCASDCV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF421VTZ_GCGCAKGCGCASDCV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF421VTZ_GCGCAKGCGCASDCV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF421VTZ_GCGCAKGCGCASDCV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 79a05d00cbcc6941e80f4d61ea32cc32 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens uterus tissue female adult (51 years);Original_cell_type=uterus;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF421VTZ;ENCODE_bigBed_id=ENCFF631BWF;PMID=34755879;Motif_sequence=GCGCAKGCGCASDCV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000995;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook Uterus (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR798NVH] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBWF5NETBS2 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBWF5NETBS2 data_source Factorbook Download track Download number_of_intervals 51,391 bp_covered 770,865 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR130TQM biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 760,192 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF702WMY_RGCGCCMYCTGGTGG_sorted.bed.gz processed_file_md5 a9ae0fd969a215721bd166599b3a2435 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF702WMY_RGCGCCMYCTGGTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF702WMY_RGCGCCMYCTGGTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF702WMY_RGCGCCMYCTGGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF702WMY_RGCGCCMYCTGGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 382db3c4d6ee54cb18c605077f3d1903 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF702WMY;ENCODE_bigBed_id=ENCFF235GTZ;PMID=34755879;Motif_sequence=RGCGCCMYCTGGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR130TQM] [Life stage: Adult] [TFBS]
CTCF • Epithelium NGFTBWFBG7NXDM • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBWFBG7NXDM data_source Factorbook Download track Download number_of_intervals 247 bp_covered 3,705 output_type transcription factor binding sites significant genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR003SZZ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,864 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF523MWC_SCGCCCCCTGGYGGC_filtered.bed.gz processed_file_md5 3a4982253aeef332edff5533151c9f78 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF523MWC_SCGCCCCCTGGYGGC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF523MWC_SCGCCCCCTGGYGGC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF523MWC_SCGCCCCCTGGYGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF523MWC_SCGCCCCCTGGYGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6a87774242384f069a891695aa3d4878 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (51 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF523MWC;ENCODE_bigBed_id=ENCFF571ODZ;PMID=34755879;Motif_sequence=SCGCCCCCTGGYGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR003SZZ] [Life stage: Adult] [TFBS]
CTCF • C4-2B NGFTBWGZRE67JY • Factorbook34755879 Motif finding C4-2B TFBS Show metadata Download track Track metadata identifier NGFTBWGZRE67JY data_source Factorbook Download track Download number_of_intervals 43,199 bp_covered 907,179 output_type transcription factor binding sites all genome_build hg38 cell_type C4-2B biosample_type Cell line biosample_term_id EFO:0006365 tissue_category Male Reproductive encode_experiment_id ENCSR460LGH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 499,384 downloaded_date 07/10/2024 release_date 07/21/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR_sorted.bed.gz processed_file_md5 7028c5ca79239929e880628061f474f6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF925SQE_HNYGGCCACNAGGKGGCRSYR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 90432bd23aaddcef3828b28760024b9b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens C4-2B;Original_cell_type=C4-2B;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF925SQE;ENCODE_bigBed_id=ENCFF982WNJ;PMID=34755879;Motif_sequence=HNYGGCCACNAGGKGGCRSYR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006365;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook C4-2B (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR460LGH] [Life stage: Adult] [TFBS]
CTCF • Gastrocnemius medialis NGFTBWHTJEVJCW • Factorbook34755879 Motif finding Gastrocnemius medialis TFBS Show metadata Download track Track metadata identifier NGFTBWHTJEVJCW data_source Factorbook Download track Download number_of_intervals 3,944 bp_covered 59,160 output_type transcription factor binding sites all genome_build hg38 cell_type Gastrocnemius medialis biosample_type Tissue biosample_term_id UBERON:0011907 tissue_category Skeletal Muscle encode_experiment_id ENCSR071XWO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 61,021 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF375JPE_AVNBGGGGAACTGCA_sorted.bed.gz processed_file_md5 8ed66cbf882a617a4be026adafced56e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF375JPE_AVNBGGGGAACTGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF375JPE_AVNBGGGGAACTGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF375JPE_AVNBGGGGAACTGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF375JPE_AVNBGGGGAACTGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 852eb1905479c2b9c0ccdfec4c5f00d2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastrocnemius medialis tissue female adult (51 years);Original_cell_type=gastrocnemius medialis;Lab=Michael Snyder, Stanford;System=musculature;ENCODE_BED_id=ENCFF375JPE;ENCODE_bigBed_id=ENCFF291LAG;PMID=34755879;Motif_sequence=AVNBGGGGAACTGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0011907;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Gastrocnemius medialis (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR071XWO] [Life stage: Adult] [TFBS]
CTCF • HL-60 NGFTBWI4TEP3J4 • Factorbook34755879 Motif finding HL-60 TFBS Show metadata Download track Track metadata identifier NGFTBWI4TEP3J4 data_source Factorbook Download track Download number_of_intervals 89 bp_covered 2,136 output_type transcription factor binding sites significant genome_build hg38 cell_type HL-60 biosample_type Cell line biosample_term_id EFO:0002793 tissue_category Blood encode_experiment_id ENCSR000DUP biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,089 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF432AMS_CCAYYAGRKGGCASYRGAGRGCMM_filtered.bed.gz processed_file_md5 cc4a69e0181e4a98a5138d4ad4a4e43c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF432AMS_CCAYYAGRKGGCASYRGAGRGCMM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF432AMS_CCAYYAGRKGGCASYRGAGRGCMM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF432AMS_CCAYYAGRKGGCASYRGAGRGCMM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF432AMS_CCAYYAGRKGGCASYRGAGRGCMM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3426f73970ba30ff55a1c40d76988b61 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HL-60;Original_cell_type=HL-60;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF432AMS;ENCODE_bigBed_id=ENCFF833OFP;PMID=34755879;Motif_sequence=CCAYYAGRKGGCASYRGAGRGCMM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002793;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook HL-60 (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUP] [Life stage: Adult] [TFBS]
CTCF • Fibroblast NGFTBWIG5O5IWU • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBWIG5O5IWU data_source Factorbook Download track Download number_of_intervals 7,669 bp_covered 61,352 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Blood Vessel encode_experiment_id ENCSR000DUX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 82,248 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF170QWE_CMWGGCTG_sorted.bed.gz processed_file_md5 4ea55ab3e2514d059492e3dafc4aeee5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF170QWE_CMWGGCTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF170QWE_CMWGGCTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF170QWE_CMWGGCTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF170QWE_CMWGGCTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f59c25552241e15aa1118c68d86bfe4a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of pulmonary artery;Original_cell_type=fibroblast of pulmonary artery;Lab=John Stamatoyannopoulos, UW;System=circulatory system;ENCODE_BED_id=ENCFF170QWE;ENCODE_bigBed_id=ENCFF742RSV;PMID=34755879;Motif_sequence=CMWGGCTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002557;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DUX] [TFBS]
CTCF • Liver lobe NGFTBWIL2DWKYS • Factorbook34755879 Motif finding Liver lobe TFBS Show metadata Download track Track metadata identifier NGFTBWIL2DWKYS data_source Factorbook Download track Download number_of_intervals 17,911 bp_covered 376,131 output_type transcription factor binding sites all genome_build hg38 cell_type Liver lobe biosample_type Tissue biosample_term_id UBERON:0001113 tissue_category Liver encode_experiment_id ENCSR911GFJ biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 353,934 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046XEZ_CHCDNWWTGDCCACYAGRKGG_sorted.bed.gz processed_file_md5 6a5a565887bd5dd976ea390aecfd97cc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046XEZ_CHCDNWWTGDCCACYAGRKGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046XEZ_CHCDNWWTGDCCACYAGRKGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF046XEZ_CHCDNWWTGDCCACYAGRKGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF046XEZ_CHCDNWWTGDCCACYAGRKGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 db7bd16af0fdc6e168ea7d0da68b0d00 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens right lobe of liver tissue female adult (53 years);Original_cell_type=right lobe of liver;Lab=Michael Snyder, Stanford;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF046XEZ;ENCODE_bigBed_id=ENCFF956UTA;PMID=34755879;Motif_sequence=CHCDNWWTGDCCACYAGRKGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001114;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Liver lobe (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR911GFJ] [Life stage: Adult] [TFBS]
CTCF • HCT116 NGFTBWK7Q5AA2F • Factorbook34755879 Motif finding HCT116 TFBS Show metadata Download track Track metadata identifier NGFTBWK7Q5AA2F data_source Factorbook Download track Download number_of_intervals 17,158 bp_covered 188,738 output_type transcription factor binding sites all genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR240PRQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 228,324 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_SCTGCAGTTCC_sorted.bed.gz processed_file_md5 72a8135b29a395bf3b303ea68674d96e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_SCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF803RIY_SCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF803RIY_SCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF803RIY_SCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 30f0f8bd6dfc625fef0b819082a9d41d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HCT116;Original_cell_type=HCT116;Lab=Bradley Bernstein, Broad;System=digestive system;ENCODE_BED_id=ENCFF803RIY;ENCODE_bigBed_id=ENCFF402LTB;PMID=34755879;Motif_sequence=SCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook HCT116 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR240PRQ] [Life stage: Adult] [TFBS]
CTCF • Muscularis mucosa NGFTBWLGRM4W7R • Factorbook34755879 Motif finding Muscularis mucosa TFBS Show metadata Download track Track metadata identifier NGFTBWLGRM4W7R data_source Factorbook Download track Download number_of_intervals 8,136 bp_covered 227,808 output_type transcription factor binding sites all genome_build hg38 cell_type Muscularis mucosa biosample_type Tissue biosample_term_id UBERON:0006676 tissue_category Digestive encode_experiment_id ENCSR559KAB biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 183,760 downloaded_date 07/10/2024 release_date 12/19/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_TGNTGCCMCCTGKTGGASARARNRGGHW_sorted.bed.gz processed_file_md5 17ed70613a0184e272004629bb7d5964 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_TGNTGCCMCCTGKTGGASARARNRGGHW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF938CMJ_TGNTGCCMCCTGKTGGASARARNRGGHW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF938CMJ_TGNTGCCMCCTGKTGGASARARNRGGHW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF938CMJ_TGNTGCCMCCTGKTGGASARARNRGGHW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b439b232edc0d7447d02f25b505fb2c4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus muscularis mucosa tissue male adult (37 years);Original_cell_type=esophagus muscularis mucosa;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF938CMJ;ENCODE_bigBed_id=ENCFF421MEH;PMID=34755879;Motif_sequence=TGNTGCCMCCTGKTGGASARARNRGGHW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004648;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Muscularis mucosa (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR559KAB] [Life stage: Adult] [TFBS]
CTCF • 22Rv1 NGFTBWMGMF7ZMF • Factorbook34755879 Motif finding 22Rv1 TFBS Show metadata Download track Track metadata identifier NGFTBWMGMF7ZMF data_source Factorbook Download track Download number_of_intervals 34,592 bp_covered 380,512 output_type transcription factor binding sites all genome_build hg38 cell_type 22Rv1 biosample_type Cell line biosample_term_id EFO:0002095 tissue_category Male Reproductive encode_experiment_id ENCSR857PBV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 327,248 downloaded_date 07/10/2024 release_date 06/15/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515MZT_SCTGCAGTTCY_sorted.bed.gz processed_file_md5 fa370a9b9b16dcdaa37a4ab17601dec7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515MZT_SCTGCAGTTCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF515MZT_SCTGCAGTTCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF515MZT_SCTGCAGTTCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF515MZT_SCTGCAGTTCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ba3d57355791afe70cce5854eb13be8f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens 22Rv1;Original_cell_type=22Rv1;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF515MZT;ENCODE_bigBed_id=ENCFF466OXN;PMID=34755879;Motif_sequence=SCTGCAGTTCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002095;is_hg38_lifted=no system_category Reproductive life_stage Unknown track_name Factorbook 22Rv1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR857PBV] [TFBS]
CTCF • MCF-7 NGFTBWOBL63W2S • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBWOBL63W2S data_source Factorbook Download track Download number_of_intervals 7,035 bp_covered 49,245 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DML biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 65,627 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721XKI_TGCWGCY_sorted.bed.gz processed_file_md5 e4752fd17154eac8505c0ee573a987d7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721XKI_TGCWGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721XKI_TGCWGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF721XKI_TGCWGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF721XKI_TGCWGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6515ee5fe353883e552ec03f91813439 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF721XKI;ENCODE_bigBed_id=ENCFF531PKD;PMID=34755879;Motif_sequence=TGCWGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DML] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBWPQRKTVLG • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBWPQRKTVLG data_source Factorbook Download track Download number_of_intervals 44,549 bp_covered 668,235 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BHV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 745,405 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF296NHH_RGYGCCMYCTRSTGG_sorted.bed.gz processed_file_md5 2fd4c32dfa0db68b6cdcc19cdbee24ef wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF296NHH_RGYGCCMYCTRSTGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF296NHH_RGYGCCMYCTRSTGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF296NHH_RGYGCCMYCTRSTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF296NHH_RGYGCCMYCTRSTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 37b7bff8af2fc662989a530721a284d7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour;Original_cell_type=A549;Lab=Richard Myers, HAIB;System=respiratory system;ENCODE_BED_id=ENCFF296NHH;ENCODE_bigBed_id=ENCFF679ZFJ;PMID=34755879;Motif_sequence=RGYGCCMYCTRSTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHV] [Life stage: Adult] [TFBS]
CTCF • GM12801 NGFTBWQ2KTUVPQ • Factorbook34755879 Motif finding GM12801 TFBS Show metadata Download track Track metadata identifier NGFTBWQ2KTUVPQ data_source Factorbook Download track Download number_of_intervals 898 bp_covered 9,878 output_type transcription factor binding sites all genome_build hg38 cell_type GM12801 biosample_type Cell line biosample_term_id EFO:0005353 tissue_category Blood encode_experiment_id ENCSR000DQY biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 14,277 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF719UZS_CTGCAGTTYCH_sorted.bed.gz processed_file_md5 a8112691230a05f21000eb29b92f424d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF719UZS_CTGCAGTTYCH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF719UZS_CTGCAGTTYCH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF719UZS_CTGCAGTTYCH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF719UZS_CTGCAGTTYCH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ad30f5c8e2f7760bd4a26e170c3b8880 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12801;Original_cell_type=GM12801;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF719UZS;ENCODE_bigBed_id=ENCFF258NJQ;PMID=34755879;Motif_sequence=CTGCAGTTYCH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005353;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12801 (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQY] [TFBS]
CTCF • Epithelial cell NGFTBWSHRMWVZ4 • Factorbook34755879 Motif finding Epithelial cell TFBS Show metadata Download track Track metadata identifier NGFTBWSHRMWVZ4 data_source Factorbook Download track Download number_of_intervals 47,988 bp_covered 719,820 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelial cell biosample_type Primary cell biosample_term_id CL:0000066 tissue_category Kidney encode_experiment_id ENCSR000DVH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 834,068 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SDM_SYGCCMYCTGSTGGC_sorted.bed.gz processed_file_md5 32617047d5c0e0a80ef24753e5568035 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SDM_SYGCCMYCTGSTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF059SDM_SYGCCMYCTGSTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SDM_SYGCCMYCTGSTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SDM_SYGCCMYCTGSTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1dec0734a08dee4b07fb7b54eaeb4584 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens kidney epithelial cell;Original_cell_type=kidney epithelial cell;Lab=John Stamatoyannopoulos, UW;System=excretory system;ENCODE_BED_id=ENCFF059SDM;ENCODE_bigBed_id=ENCFF173LWY;PMID=34755879;Motif_sequence=SYGCCMYCTGSTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002518;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook Epithelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DVH] [TFBS]
CTCF • Neural progenitor cell NGFTBWUUOXC3ME • Factorbook34755879 Motif finding Neural progenitor cell TFBS Show metadata Download track Track metadata identifier NGFTBWUUOXC3ME data_source Factorbook Download track Download number_of_intervals 12,420 bp_covered 136,620 output_type transcription factor binding sites all genome_build hg38 cell_type Neural progenitor cell biosample_type In vitro differentiated cells biosample_term_id CL:0011020 tissue_category Brain encode_experiment_id ENCSR125NBL biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 169,407 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF295FMF_CTGCAGTDCCV_sorted.bed.gz processed_file_md5 005944e0156290b4fd4977f5a71fd59d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF295FMF_CTGCAGTDCCV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF295FMF_CTGCAGTDCCV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF295FMF_CTGCAGTDCCV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF295FMF_CTGCAGTDCCV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 88b4a6dcf087d00bc1427a8255061fa4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens neural progenitor cell originated from H9;Original_cell_type=neural progenitor cell;Lab=Bradley Bernstein, Broad;System=central nervous system;ENCODE_BED_id=ENCFF295FMF;ENCODE_bigBed_id=ENCFF420RBO;PMID=34755879;Motif_sequence=CTGCAGTDCCV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0011020;is_hg38_lifted=no system_category Nervous life_stage Embryonic track_name Factorbook Neural progenitor cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR125NBL] [Life stage: Embryonic] [TFBS]