CTCF • Epithelium NGFTBWVD4GWDOY • Factorbook34755879 Motif finding Epithelium TFBS Show metadata Download track Track metadata identifier NGFTBWVD4GWDOY data_source Factorbook Download track Download number_of_intervals 29,327 bp_covered 733,175 output_type transcription factor binding sites all genome_build hg38 cell_type Epithelium biosample_type Tissue biosample_term_id NCIT:C12710 tissue_category Digestive encode_experiment_id ENCSR773JBP biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 628,859 downloaded_date 07/10/2024 release_date 12/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_YGCCCYCTKGTGGCCVYWKNKGGRA_sorted.bed.gz processed_file_md5 73ddfc131f8bd19688f0ae2398e515f2 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_YGCCCYCTKGTGGCCVYWKNKGGRA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF848GUU_YGCCCYCTKGTGGCCVYWKNKGGRA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF848GUU_YGCCCYCTKGTGGCCVYWKNKGGRA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF848GUU_YGCCCYCTKGTGGCCVYWKNKGGRA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 606e9a546dc2171a48f49498ca839b70 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens esophagus squamous epithelium tissue female adult (53 years);Original_cell_type=esophagus squamous epithelium;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF848GUU;ENCODE_bigBed_id=ENCFF683HYK;PMID=34755879;Motif_sequence=YGCCCYCTKGTGGCCVYWKNKGGRA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0006920;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Epithelium (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR773JBP] [Life stage: Adult] [TFBS]
CTCF • Stomach NGFTBWVVWO3HOJ • Factorbook34755879 Motif finding Stomach TFBS Show metadata Download track Track metadata identifier NGFTBWVVWO3HOJ data_source Factorbook Download track Download number_of_intervals 210 bp_covered 5,880 output_type transcription factor binding sites significant genome_build hg38 cell_type Stomach biosample_type Tissue biosample_term_id UBERON:0000945 tissue_category Digestive encode_experiment_id ENCSR618QYE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,931 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533OIH_TGCCMYCTGGTGGHCANTBBBGGRARTK_filtered.bed.gz processed_file_md5 49cd8d9bbe4a113c9a771677f1c4055e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533OIH_TGCCMYCTGGTGGHCANTBBBGGRARTK_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF533OIH_TGCCMYCTGGTGGHCANTBBBGGRARTK_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF533OIH_TGCCMYCTGGTGGHCANTBBBGGRARTK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF533OIH_TGCCMYCTGGTGGHCANTBBBGGRARTK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2123454edb6aedbb5fa68d4432eba005 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens stomach tissue male adult (37 years);Original_cell_type=stomach;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF533OIH;ENCODE_bigBed_id=ENCFF041WNW;PMID=34755879;Motif_sequence=TGCCMYCTGGTGGHCANTBBBGGRARTK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0000945;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Stomach (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR618QYE] [Life stage: Adult] [TFBS]
CTCF • B cell NGFTBWWNVHVDQV • Factorbook34755879 Motif finding B cell TFBS Show metadata Download track Track metadata identifier NGFTBWWNVHVDQV data_source Factorbook Download track Download number_of_intervals 55,677 bp_covered 835,155 output_type transcription factor binding sites all genome_build hg38 cell_type B cell biosample_type Primary cell biosample_term_id CL:0000236 tissue_category Immune encode_experiment_id ENCSR000AUV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 769,997 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF390ICZ_YGGCCACYAGRKGGC_sorted.bed.gz processed_file_md5 9ccf8c0186fb3946e154f2f366ff2851 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF390ICZ_YGGCCACYAGRKGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF390ICZ_YGGCCACYAGRKGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF390ICZ_YGGCCACYAGRKGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF390ICZ_YGGCCACYAGRKGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3a51df026f0f19434cb86a89f5e4e4f2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens B cell female adult (27 years) and female adult (43 years);Original_cell_type=B cell;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF390ICZ;ENCODE_bigBed_id=ENCFF738RTM;PMID=34755879;Motif_sequence=YGGCCACYAGRKGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000236;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook B cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AUV] [Life stage: Adult] [TFBS]
CTCF • WERI-Rb-1 NGFTBWXT5JVUHB • Factorbook34755879 Motif finding WERI-Rb-1 TFBS Show metadata Download track Track metadata identifier NGFTBWXT5JVUHB data_source Factorbook Download track Download number_of_intervals 3,620 bp_covered 83,260 output_type transcription factor binding sites all genome_build hg38 cell_type WERI-Rb-1 biosample_type Cell line biosample_term_id EFO:0005715 tissue_category Eye encode_experiment_id ENCSR000DXW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 76,723 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_TGNWGGMMMSRAAGGKAAWAACA_sorted.bed.gz processed_file_md5 a7de71d3f4b1c4f7437ce02fc56d4eb7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_TGNWGGMMMSRAAGGKAAWAACA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF124UXX_TGNWGGMMMSRAAGGKAAWAACA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF124UXX_TGNWGGMMMSRAAGGKAAWAACA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF124UXX_TGNWGGMMMSRAAGGKAAWAACA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 95418e16fd37e62027df8a829efcc7bf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens WERI-Rb-1;Original_cell_type=WERI-Rb-1;Lab=John Stamatoyannopoulos, UW;System=sensory system;ENCODE_BED_id=ENCFF124UXX;ENCODE_bigBed_id=ENCFF349QKF;PMID=34755879;Motif_sequence=TGNWGGMMMSRAAGGKAAWAACA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005715;is_hg38_lifted=no system_category Sensory life_stage Child track_name Factorbook WERI-Rb-1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DXW] [Life stage: Child] [TFBS]
CTCF • SU-DHL-6 NGFTBWXUXWXGPI • Factorbook34755879 Motif finding SU-DHL-6 TFBS Show metadata Download track Track metadata identifier NGFTBWXUXWXGPI data_source Factorbook Download track Download number_of_intervals 26,001 bp_covered 546,021 output_type transcription factor binding sites all genome_build hg38 cell_type SU-DHL-6 biosample_type Cell line biosample_term_id EFO:0002357 tissue_category Blood encode_experiment_id ENCSR125DKL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 390,928 downloaded_date 07/10/2024 release_date 11/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF619KPX_GAGCWCCCBCTGSTGTCCTGA_sorted.bed.gz processed_file_md5 073b36a90dc0d2783a22e2ed15ee2124 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF619KPX_GAGCWCCCBCTGSTGTCCTGA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF619KPX_GAGCWCCCBCTGSTGTCCTGA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF619KPX_GAGCWCCCBCTGSTGTCCTGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF619KPX_GAGCWCCCBCTGSTGTCCTGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8a685bfe8c87203ab4ab491ec540cf65 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens SU-DHL-6;Original_cell_type=SU-DHL-6;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF619KPX;ENCODE_bigBed_id=ENCFF897ONT;PMID=34755879;Motif_sequence=GAGCWCCCBCTGSTGTCCTGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002357;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook SU-DHL-6 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR125DKL] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTBWYAH62HE2 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBWYAH62HE2 data_source Factorbook Download track Download number_of_intervals 6,959 bp_covered 76,549 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000AKB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 100,401 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_SCTGCAGTTCC_sorted.bed.gz processed_file_md5 ffbf4d54258ded403ac135ff8e039851 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_SCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF797SDL_SCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF797SDL_SCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF797SDL_SCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 48cc93609de43fb4a3296131cf9739f1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF797SDL;ENCODE_bigBed_id=ENCFF217EAX;PMID=34755879;Motif_sequence=SCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AKB] [TFBS]
CTCF • Sigmoid colon NGFTBWZS7XJG6M • Factorbook34755879 Motif finding Sigmoid colon TFBS Show metadata Download track Track metadata identifier NGFTBWZS7XJG6M data_source Factorbook Download track Download number_of_intervals 4,654 bp_covered 51,194 output_type transcription factor binding sites all genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id ENCSR925GDS biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 65,585 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF015NKY_GGRACTGCAGS_sorted.bed.gz processed_file_md5 c9d44a074e2a86d0ef27be2eb852862d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF015NKY_GGRACTGCAGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF015NKY_GGRACTGCAGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF015NKY_GGRACTGCAGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF015NKY_GGRACTGCAGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 33838029553a554b3264e686e083eb62 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens sigmoid colon tissue female adult (53 years);Original_cell_type=sigmoid colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF015NKY;ENCODE_bigBed_id=ENCFF848HFJ;PMID=34755879;Motif_sequence=GGRACTGCAGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Sigmoid colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR925GDS] [Life stage: Adult] [TFBS]
CTCF • K562 NGFTBX3CW7LKIG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBX3CW7LKIG data_source Factorbook Download track Download number_of_intervals 51,259 bp_covered 768,885 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BPJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 889,903 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF582SNT_CCASCAGRGGGCRCY_sorted.bed.gz processed_file_md5 6db0166b41a4da31b2d8d5e7adf7a856 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF582SNT_CCASCAGRGGGCRCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF582SNT_CCASCAGRGGGCRCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF582SNT_CCASCAGRGGGCRCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF582SNT_CCASCAGRGGGCRCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e4429e0e98de85dcd15caf8829e88d42 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF582SNT;ENCODE_bigBed_id=ENCFF111MGE;PMID=34755879;Motif_sequence=CCASCAGRGGGCRCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BPJ] [Life stage: Adult] [TFBS]
CTCF • Spleen NGFTBX3UD5VAL7 • Factorbook34755879 Motif finding Spleen TFBS Show metadata Download track Track metadata identifier NGFTBX3UD5VAL7 data_source Factorbook Download track Download number_of_intervals 9,754 bp_covered 107,294 output_type transcription factor binding sites all genome_build hg38 cell_type Spleen biosample_type Tissue biosample_term_id UBERON:0002106 tissue_category Immune Organ encode_experiment_id ENCSR028YEV biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 133,735 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF176ERE_SCTGCAGTTCC_sorted.bed.gz processed_file_md5 879054d71dbb15de5279dd20b3c4d357 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF176ERE_SCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF176ERE_SCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF176ERE_SCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF176ERE_SCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 91d543f48774d6b21706d696d9f60bd3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens spleen tissue male adult (54 years);Original_cell_type=spleen;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF176ERE;ENCODE_bigBed_id=ENCFF878IYR;PMID=34755879;Motif_sequence=SCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002106;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Spleen (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR028YEV] [Life stage: Adult] [TFBS]
CTCF • Endothelial cell NGFTBX4IUOS2OD • Factorbook34755879 Motif finding Endothelial cell TFBS Show metadata Download track Track metadata identifier NGFTBX4IUOS2OD data_source Factorbook Download track Download number_of_intervals 710 bp_covered 14,910 output_type transcription factor binding sites significant genome_build hg38 cell_type Endothelial cell biosample_type Primary cell biosample_term_id CL:0000115 tissue_category Umbilical Cord encode_experiment_id ENCSR000DLW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 12,435 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW_filtered.bed.gz processed_file_md5 9fb14b068a23b4862f5f27ca2ffd031c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF601VJF_TASYGCCMYCTAGTGGHHANW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b9de13e3d70d7c79e2c105ebfa572454 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens endothelial cell of umbilical vein newborn;Original_cell_type=endothelial cell of umbilical vein;Lab=Vishwanath Iyer, UTA;System=reproductive system,circulatory system;ENCODE_BED_id=ENCFF601VJF;ENCODE_bigBed_id=ENCFF336GRA;PMID=34755879;Motif_sequence=TASYGCCMYCTAGTGGHHANW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002618;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook Endothelial cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLW] [TFBS]
CTCF • Peyers patch NGFTBX5PJL4ZVC • Factorbook34755879 Motif finding Peyers patch TFBS Show metadata Download track Track metadata identifier NGFTBX5PJL4ZVC data_source Factorbook Download track Download number_of_intervals 65 bp_covered 975 output_type transcription factor binding sites significant genome_build hg38 cell_type Peyers patch biosample_type Tissue biosample_term_id UBERON:0001211 tissue_category Immune encode_experiment_id ENCSR419ANE biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,015 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF631JVL_GCCACCAGGKGGCRS_filtered.bed.gz processed_file_md5 33d69aa310302f166a62c5a53ec28406 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF631JVL_GCCACCAGGKGGCRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF631JVL_GCCACCAGGKGGCRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF631JVL_GCCACCAGGKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF631JVL_GCCACCAGGKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d29cf6fb65532e07083fbabab9be85bb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens Peyer's patch tissue male adult (37 years);Original_cell_type=Peyer's patch;Lab=Michael Snyder, Stanford;System=digestive system,immune system;ENCODE_BED_id=ENCFF631JVL;ENCODE_bigBed_id=ENCFF701KWW;PMID=34755879;Motif_sequence=GCCACCAGGKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001211;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook Peyers patch (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR419ANE] [Life stage: Adult] [TFBS]
CTCF • D721 Med NGFTBXA4F6AHXY • Factorbook34755879 Motif finding D721 Med TFBS Show metadata Download track Track metadata identifier NGFTBXA4F6AHXY data_source Factorbook Download track Download number_of_intervals 38,477 bp_covered 577,155 output_type transcription factor binding sites all genome_build hg38 cell_type D721 Med biosample_type Cell line biosample_term_id EFO:0005696 tissue_category Brain encode_experiment_id ENCSR000DMY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 669,020 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF364SUA_GCCASYAGRGGGCGC_sorted.bed.gz processed_file_md5 f004b8cd07902b681f3ede249820f98a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF364SUA_GCCASYAGRGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF364SUA_GCCASYAGRGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF364SUA_GCCASYAGRGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF364SUA_GCCASYAGRGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ed5f2686bdc933c80afe584aabe5d411 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens D721Med;Original_cell_type=D721Med;Lab=Vishwanath Iyer, UTA;System=central nervous system;ENCODE_BED_id=ENCFF364SUA;ENCODE_bigBed_id=ENCFF513FYD;PMID=34755879;Motif_sequence=GCCASYAGRGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005696;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook D721 Med (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMY] [Life stage: Child] [TFBS]
CTCF • Fibroblast NGFTBXAIJQELLG • Factorbook34755879 Motif finding Fibroblast TFBS Show metadata Download track Track metadata identifier NGFTBXAIJQELLG data_source Factorbook Download track Download number_of_intervals 41,955 bp_covered 629,325 output_type transcription factor binding sites all genome_build hg38 cell_type Fibroblast biosample_type Primary cell biosample_term_id CL:0000057 tissue_category Skin encode_experiment_id ENCSR000APM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 758,928 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF476PYB_GCCMYCTRGTGGCCR_sorted.bed.gz processed_file_md5 bb322194672a2e4010b8f19707580ac7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF476PYB_GCCMYCTRGTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF476PYB_GCCMYCTRGTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF476PYB_GCCMYCTRGTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF476PYB_GCCMYCTRGTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8ff0f18abfff1324c9428bd780966f56 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens fibroblast of dermis;Original_cell_type=fibroblast of dermis;Lab=Bradley Bernstein, Broad;System=integumental system;ENCODE_BED_id=ENCFF476PYB;ENCODE_bigBed_id=ENCFF986DNJ;PMID=34755879;Motif_sequence=GCCMYCTRGTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0002551;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Fibroblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000APM] [TFBS]
CTCF • DND-41 NGFTBXAWAP3ADE • Factorbook34755879 Motif finding DND-41 TFBS Show metadata Download track Track metadata identifier NGFTBXAWAP3ADE data_source Factorbook Download track Download number_of_intervals 11,927 bp_covered 226,613 output_type transcription factor binding sites all genome_build hg38 cell_type DND-41 biosample_type Cell line biosample_term_id EFO:0007074 tissue_category Blood encode_experiment_id ENCSR000AQU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 221,261 downloaded_date 07/10/2024 release_date 03/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF388IXL_GGCTGCAGTTCCVVHNKYK_sorted.bed.gz processed_file_md5 f77ad1ad298da88cfd45011a58663807 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF388IXL_GGCTGCAGTTCCVVHNKYK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF388IXL_GGCTGCAGTTCCVVHNKYK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF388IXL_GGCTGCAGTTCCVVHNKYK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF388IXL_GGCTGCAGTTCCVVHNKYK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 efee9ece157f8a0b58fb3352365f5862 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens DND-41;Original_cell_type=DND-41;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF388IXL;ENCODE_bigBed_id=ENCFF913MRA;PMID=34755879;Motif_sequence=GGCTGCAGTTCCVVHNKYK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0007074;is_hg38_lifted=no system_category Cardiovascular life_stage Child track_name Factorbook DND-41 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000AQU] [Life stage: Child] [TFBS]
CTCF • Sigmoid colon NGFTBXAXC6E54Y • Factorbook34755879 Motif finding Sigmoid colon TFBS Show metadata Download track Track metadata identifier NGFTBXAXC6E54Y data_source Factorbook Download track Download number_of_intervals 30,587 bp_covered 458,805 output_type transcription factor binding sites all genome_build hg38 cell_type Sigmoid colon biosample_type Tissue biosample_term_id UBERON:0001159 tissue_category Digestive encode_experiment_id ENCSR721AHD biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 511,484 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF480QYI_GCCACCAGRKGGCRS_sorted.bed.gz processed_file_md5 ebc90024e6806a68db471099d8cc1b3f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF480QYI_GCCACCAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF480QYI_GCCACCAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF480QYI_GCCACCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF480QYI_GCCACCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7c5f606c8901ca79eb5ff4b18dfcf5a3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens sigmoid colon tissue male adult (37 years);Original_cell_type=sigmoid colon;Lab=Michael Snyder, Stanford;System=digestive system;ENCODE_BED_id=ENCFF480QYI;ENCODE_bigBed_id=ENCFF219LPW;PMID=34755879;Motif_sequence=GCCACCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0001159;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Sigmoid colon (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR721AHD] [Life stage: Adult] [TFBS]
CTCF • H1-hESC NGFTBXBMWYF65O • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTBXBMWYF65O data_source Factorbook Download track Download number_of_intervals 1,176 bp_covered 27,048 output_type transcription factor binding sites significant genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000AMF biological_replicate 1 technical_replicate 1_1, 1_2 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 21,920 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF692RPA_CCASYAGRKGGCRSYVBNGVVCM_filtered.bed.gz processed_file_md5 5531b391c6ab2d5ad0aee3fbf6cf70bf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF692RPA_CCASYAGRKGGCRSYVBNGVVCM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF692RPA_CCASYAGRKGGCRSYVBNGVVCM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF692RPA_CCASYAGRKGGCRSYVBNGVVCM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF692RPA_CCASYAGRKGGCRSYVBNGVVCM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4794e16a8ec7926c6b30d61b6eac29f8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Bradley Bernstein, Broad;System=NR;ENCODE_BED_id=ENCFF692RPA;ENCODE_bigBed_id=ENCFF764RHO;PMID=34755879;Motif_sequence=CCASYAGRKGGCRSYVBNGVVCM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000AMF] [TFBS]
CTCF • GM13977 NGFTBXCLIN23QP • Factorbook34755879 Motif finding GM13977 TFBS Show metadata Download track Track metadata identifier NGFTBXCLIN23QP data_source Factorbook Download track Download number_of_intervals 4,784 bp_covered 71,760 output_type transcription factor binding sites all genome_build hg38 cell_type GM13977 biosample_type Cell line biosample_term_id EFO:0005346 tissue_category Blood encode_experiment_id ENCSR000DLB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 83,591 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612VSV_CTGCAGTTCYNSHVH_sorted.bed.gz processed_file_md5 2f48d082704178438e894463133db73f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612VSV_CTGCAGTTCYNSHVH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612VSV_CTGCAGTTCYNSHVH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF612VSV_CTGCAGTTCYNSHVH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF612VSV_CTGCAGTTCYNSHVH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c4fee6c263301a7e966d687d2ea41b66 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM13977;Original_cell_type=GM13977;Lab=Vishwanath Iyer, UTA;System=immune system;ENCODE_BED_id=ENCFF612VSV;ENCODE_bigBed_id=ENCFF528ESQ;PMID=34755879;Motif_sequence=CTGCAGTTCYNSHVH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005346;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook GM13977 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DLB] [Life stage: Adult] [TFBS]
CTCF • GM12878 NGFTBXDRX2DCF6 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBXDRX2DCF6 data_source Factorbook Download track Download number_of_intervals 44,006 bp_covered 792,108 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DZN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 811,671 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138REW_GGCCACYAGRKGGCGSYV_sorted.bed.gz processed_file_md5 6bee4a0b504a82b3cc2dc24f8a837293 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138REW_GGCCACYAGRKGGCGSYV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF138REW_GGCCACYAGRKGGCGSYV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF138REW_GGCCACYAGRKGGCGSYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF138REW_GGCCACYAGRKGGCGSYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d3dc31f032dd27e12178b6d64f8fc7c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF138REW;ENCODE_bigBed_id=ENCFF929GSU;PMID=34755879;Motif_sequence=GGCCACYAGRKGGCGSYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DZN] [TFBS]
CTCF • Thyroid gland NGFTBXGO2I246P • Factorbook34755879 Motif finding Thyroid gland TFBS Show metadata Download track Track metadata identifier NGFTBXGO2I246P data_source Factorbook Download track Download number_of_intervals 25,073 bp_covered 300,876 output_type transcription factor binding sites all genome_build hg38 cell_type Thyroid gland biosample_type Tissue biosample_term_id UBERON:0002046 tissue_category Endocrine encode_experiment_id ENCSR744YJR biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 381,656 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498GQK_CGCCCYCTGGYG_sorted.bed.gz processed_file_md5 e3370f9ef8a04bfc8471d248ab19a61d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498GQK_CGCCCYCTGGYG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF498GQK_CGCCCYCTGGYG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF498GQK_CGCCCYCTGGYG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF498GQK_CGCCCYCTGGYG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2c6eb9ac968b84fd0c3b1c5eea37a6cc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens thyroid gland tissue female adult (53 years);Original_cell_type=thyroid gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF498GQK;ENCODE_bigBed_id=ENCFF748ICQ;PMID=34755879;Motif_sequence=CGCCCYCTGGYG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002046;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Thyroid gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR744YJR] [Life stage: Adult] [TFBS]
CTCF • D721 Med NGFTBXHHCQ64MQ • Factorbook34755879 Motif finding D721 Med TFBS Show metadata Download track Track metadata identifier NGFTBXHHCQ64MQ data_source Factorbook Download track Download number_of_intervals 104 bp_covered 1,560 output_type transcription factor binding sites significant genome_build hg38 cell_type D721 Med biosample_type Cell line biosample_term_id EFO:0005696 tissue_category Brain encode_experiment_id ENCSR000DMY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,344 downloaded_date 07/10/2024 release_date 08/27/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF364SUA_RSYGCCMYCTRGTGG_filtered.bed.gz processed_file_md5 30f859d240e7a1806b821732c1d69d8f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF364SUA_RSYGCCMYCTRGTGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF364SUA_RSYGCCMYCTRGTGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF364SUA_RSYGCCMYCTRGTGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF364SUA_RSYGCCMYCTRGTGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 76f09062cd71a870d9c6a3eebe2d38d8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens D721Med;Original_cell_type=D721Med;Lab=Vishwanath Iyer, UTA;System=central nervous system;ENCODE_BED_id=ENCFF364SUA;ENCODE_bigBed_id=ENCFF513FYD;PMID=34755879;Motif_sequence=RSYGCCMYCTRGTGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005696;is_hg38_lifted=no system_category Nervous life_stage Child track_name Factorbook D721 Med (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMY] [Life stage: Child] [TFBS]