CTCF • AG04450 NGFTBXHWIU6H6V • Factorbook34755879 Motif finding AG04450 TFBS Show metadata Download track Track metadata identifier NGFTBXHWIU6H6V data_source Factorbook Download track Download number_of_intervals 10,087 bp_covered 110,957 output_type transcription factor binding sites all genome_build hg38 cell_type AG04450 biosample_type Cell line biosample_term_id EFO:0006270 tissue_category Lung encode_experiment_id ENCSR000DPM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 143,434 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_SCTGCAGTTCC_sorted.bed.gz processed_file_md5 28ee0f1bf0d7f2aee43c92c7639236c1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_SCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF873FBD_SCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF873FBD_SCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF873FBD_SCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3190512b59a525129891c5126987888c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens AG04450;Original_cell_type=AG04450;Lab=John Stamatoyannopoulos, UW;System=respiratory system;ENCODE_BED_id=ENCFF873FBD;ENCODE_bigBed_id=ENCFF116DJL;PMID=34755879;Motif_sequence=SCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0006270;is_hg38_lifted=no system_category Respiratory life_stage Embryonic track_name Factorbook AG04450 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DPM] [Life stage: Embryonic] [TFBS]
CTCF • Adrenal gland NGFTBXIRSH6KOY • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBXIRSH6KOY data_source Factorbook Download track Download number_of_intervals 43,705 bp_covered 611,870 output_type transcription factor binding sites all genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR450BLH biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 597,386 downloaded_date 07/10/2024 release_date 11/07/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF036CYO_CCASCAGRKGGCRS_sorted.bed.gz processed_file_md5 8532462080f5abe1df910ab46708b8c1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF036CYO_CCASCAGRKGGCRS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF036CYO_CCASCAGRKGGCRS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF036CYO_CCASCAGRKGGCRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF036CYO_CCASCAGRKGGCRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a6bc8d3870f7843a9de41a85c11f575c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue male adult (54 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF036CYO;ENCODE_bigBed_id=ENCFF886WNR;PMID=34755879;Motif_sequence=CCASCAGRKGGCRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR450BLH] [Life stage: Adult] [TFBS]
CTCF • PC-3 NGFTBXIV6R3GLT • Factorbook34755879 Motif finding PC-3 TFBS Show metadata Download track Track metadata identifier NGFTBXIV6R3GLT data_source Factorbook Download track Download number_of_intervals 60,624 bp_covered 848,736 output_type transcription factor binding sites all genome_build hg38 cell_type PC-3 biosample_type Cell line biosample_term_id EFO:0002074 tissue_category Male Reproductive encode_experiment_id ENCSR359LOD biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 847,178 downloaded_date 07/10/2024 release_date 10/19/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF164ZXP_SYGCCCYCTRSHGG_sorted.bed.gz processed_file_md5 5b8139e6ee69402c32135d16ee35ea85 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF164ZXP_SYGCCCYCTRSHGG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF164ZXP_SYGCCCYCTRSHGG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF164ZXP_SYGCCCYCTRSHGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF164ZXP_SYGCCCYCTRSHGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e5b7ac220c2238b1b13a9ed76553603d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens PC-3;Original_cell_type=PC-3;Lab=Bradley Bernstein, Broad;System=reproductive system;ENCODE_BED_id=ENCFF164ZXP;ENCODE_bigBed_id=ENCFF751ABP;PMID=34755879;Motif_sequence=SYGCCCYCTRSHGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002074;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook PC-3 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR359LOD] [Life stage: Adult] [TFBS]
CTCF • K562 NGFTBXKEOZ6XNR • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBXKEOZ6XNR data_source Factorbook Download track Download number_of_intervals 9,856 bp_covered 108,416 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000DWE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 139,419 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF736NYC_SCTGCAGTTCC_sorted.bed.gz processed_file_md5 007ed57b692ef4c5004d56525d9dbbea wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF736NYC_SCTGCAGTTCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF736NYC_SCTGCAGTTCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF736NYC_SCTGCAGTTCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF736NYC_SCTGCAGTTCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 035e4183a4a46fac69114d4e6dbce207 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF736NYC;ENCODE_bigBed_id=ENCFF598YSU;PMID=34755879;Motif_sequence=SCTGCAGTTCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWE] [Life stage: Adult] [TFBS]
CTCF • Cardiac muscle cell NGFTBXKS4KAQGO • Factorbook34755879 Motif finding Cardiac muscle cell TFBS Show metadata Download track Track metadata identifier NGFTBXKS4KAQGO data_source Factorbook Download track Download number_of_intervals 38,736 bp_covered 542,304 output_type transcription factor binding sites all genome_build hg38 cell_type Cardiac muscle cell biosample_type Primary cell biosample_term_id CL:0000746 tissue_category Heart encode_experiment_id ENCSR000DTI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 644,755 downloaded_date 07/10/2024 release_date 01/17/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_KCCASYAGGGGGCR_sorted.bed.gz processed_file_md5 87c2c5858e70214a71a59d8a1e56bddb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_KCCASYAGGGGGCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF229DYR_KCCASYAGGGGGCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF229DYR_KCCASYAGGGGGCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF229DYR_KCCASYAGGGGGCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1b25dd21a0abdac7d6829393a44d5eff data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens cardiac muscle cell;Original_cell_type=cardiac muscle cell;Lab=John Stamatoyannopoulos, UW;System=musculature,circulatory system;ENCODE_BED_id=ENCFF229DYR;ENCODE_bigBed_id=ENCFF728JSA;PMID=34755879;Motif_sequence=KCCASYAGGGGGCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000746;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook Cardiac muscle cell (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DTI] [TFBS]
CTCF • Myoblast NGFTBXKVUEPITA • Factorbook34755879 Motif finding Myoblast TFBS Show metadata Download track Track metadata identifier NGFTBXKVUEPITA data_source Factorbook Download track Download number_of_intervals 4,241 bp_covered 46,651 output_type transcription factor binding sites all genome_build hg38 cell_type Myoblast biosample_type Primary cell biosample_term_id CL:0000056 tissue_category Skeletal Muscle encode_experiment_id ENCSR000ANE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 57,730 downloaded_date 07/10/2024 release_date 02/10/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721RAM_GGCTGCAATAC_sorted.bed.gz processed_file_md5 cfad38f863d4d9e5a531c7742437f43b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721RAM_GGCTGCAATAC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF721RAM_GGCTGCAATAC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF721RAM_GGCTGCAATAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF721RAM_GGCTGCAATAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fd83a25efbd6f732f8d4fddd5c38f438 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens skeletal muscle myoblast male adult (22 years);Original_cell_type=skeletal muscle myoblast;Lab=Bradley Bernstein, Broad;System=musculature;ENCODE_BED_id=ENCFF721RAM;ENCODE_bigBed_id=ENCFF813BQI;PMID=34755879;Motif_sequence=GGCTGCAATAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000515;is_hg38_lifted=no system_category Muscular life_stage Adult track_name Factorbook Myoblast (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ANE] [Life stage: Adult] [TFBS]
CTCF • GM12872 NGFTBXKZ3R4IWA • Factorbook34755879 Motif finding GM12872 TFBS Show metadata Download track Track metadata identifier NGFTBXKZ3R4IWA data_source Factorbook Download track Download number_of_intervals 10,888 bp_covered 152,432 output_type transcription factor binding sites all genome_build hg38 cell_type GM12872 biosample_type Cell line biosample_term_id EFO:0001159 tissue_category Blood encode_experiment_id ENCSR000DRN biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 178,681 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542FXV_RGCTGCAGTKCCNS_sorted.bed.gz processed_file_md5 9bd0c123d2247529f7724d26b7e04a3d wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542FXV_RGCTGCAGTKCCNS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542FXV_RGCTGCAGTKCCNS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF542FXV_RGCTGCAGTKCCNS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF542FXV_RGCTGCAGTKCCNS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f2843d3dc29102f60b851a54da11bec2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12872;Original_cell_type=GM12872;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF542FXV;ENCODE_bigBed_id=ENCFF622AZZ;PMID=34755879;Motif_sequence=RGCTGCAGTKCCNS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001159;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12872 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRN] [TFBS]
CTCF • Keratinocyte NGFTBXL2N2SGDD • Factorbook34755879 Motif finding Keratinocyte TFBS Show metadata Download track Track metadata identifier NGFTBXL2N2SGDD data_source Factorbook Download track Download number_of_intervals 58 bp_covered 1,682 output_type transcription factor binding sites significant genome_build hg38 cell_type Keratinocyte biosample_type Primary cell biosample_term_id CL:0000312 tissue_category Skin encode_experiment_id ENCSR000DWX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,667 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM_filtered.bed.gz processed_file_md5 a861cc2d52108b8cf743e466f34a06e5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF149BJK_HWWTSRCCRYBAGGKGGCAGCAGARVGCM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c8ecc2698b4bd68c2b9328d0877d677c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens keratinocyte female;Original_cell_type=keratinocyte;Lab=John Stamatoyannopoulos, UW;System=integumental system;ENCODE_BED_id=ENCFF149BJK;ENCODE_bigBed_id=ENCFF667ULX;PMID=34755879;Motif_sequence=HWWTSRCCRYBAGGKGGCAGCAGARVGCM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000312;is_hg38_lifted=no system_category Integumentary life_stage Unknown track_name Factorbook Keratinocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DWX] [TFBS]
CTCF • A549 NGFTBXMHFWFZX3 • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBXMHFWFZX3 data_source Factorbook Download track Download number_of_intervals 46,549 bp_covered 698,235 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR384KPP biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 685,383 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046WYN_GCCCCCTRSTGGCCR_sorted.bed.gz processed_file_md5 3c63276a292fca8069c443708030cebe wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046WYN_GCCCCCTRSTGGCCR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF046WYN_GCCCCCTRSTGGCCR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF046WYN_GCCCCCTRSTGGCCR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF046WYN_GCCCCCTRSTGGCCR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 eb7d5d131ebea25d00b700c2642ad748 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 2 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF046WYN;ENCODE_bigBed_id=ENCFF026RBQ;PMID=34755879;Motif_sequence=GCCCCCTRSTGGCCR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR384KPP] [Life stage: Adult] [TFBS]
CTCF • Adrenal gland NGFTBXNW3VSS42 • Factorbook34755879 Motif finding Adrenal gland TFBS Show metadata Download track Track metadata identifier NGFTBXNW3VSS42 data_source Factorbook Download track Download number_of_intervals 188 bp_covered 3,008 output_type transcription factor binding sites significant genome_build hg38 cell_type Adrenal gland biosample_type Tissue biosample_term_id UBERON:0002369 tissue_category Endocrine encode_experiment_id ENCSR770IWO biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,444 downloaded_date 07/10/2024 release_date 01/30/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SOE_CCACCAGGGGGCRCYV_filtered.bed.gz processed_file_md5 01af21c32b00c5a8068bf4444f009a47 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SOE_CCACCAGGGGGCRCYV_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF059SOE_CCACCAGGGGGCRCYV_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF059SOE_CCACCAGGGGGCRCYV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF059SOE_CCACCAGGGGGCRCYV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 933b44dd1a5b18558898383839bdde2b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens adrenal gland tissue female adult (53 years);Original_cell_type=adrenal gland;Lab=Michael Snyder, Stanford;System=endocrine system;ENCODE_BED_id=ENCFF059SOE;ENCODE_bigBed_id=ENCFF678WUB;PMID=34755879;Motif_sequence=CCACCAGGGGGCRCYV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0002369;is_hg38_lifted=no system_category Endocrine life_stage Adult track_name Factorbook Adrenal gland (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR770IWO] [Life stage: Adult] [TFBS]
CTCF • CD14+ monocyte NGFTBXREVSBUKR • Factorbook34755879 Motif finding CD14+ monocyte TFBS Show metadata Download track Track metadata identifier NGFTBXREVSBUKR data_source Factorbook Download track Download number_of_intervals 6,913 bp_covered 103,695 output_type transcription factor binding sites all genome_build hg38 cell_type CD14+ monocyte biosample_type Primary cell biosample_term_id CL:0001054 tissue_category Blood encode_experiment_id ENCSR000ATN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 96,315 downloaded_date 07/10/2024 release_date 08/06/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF190KNC_ADGWGNGGMACTGCA_sorted.bed.gz processed_file_md5 476e8be8b56f24a41941022ea8ad3d20 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF190KNC_ADGWGNGGMACTGCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF190KNC_ADGWGNGGMACTGCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF190KNC_ADGWGNGGMACTGCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF190KNC_ADGWGNGGMACTGCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 dabb559a105a70fb1164373355929186 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens CD14-positive monocyte female;Original_cell_type=CD14-positive monocyte;Lab=Bradley Bernstein, Broad;System=immune system;ENCODE_BED_id=ENCFF190KNC;ENCODE_bigBed_id=ENCFF590KQU;PMID=34755879;Motif_sequence=ADGWGNGGMACTGCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0001054;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook CD14+ monocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000ATN] [TFBS]
CTCF • Hepatocyte NGFTBXT2CR27TM • Factorbook34755879 Motif finding Hepatocyte TFBS Show metadata Download track Track metadata identifier NGFTBXT2CR27TM data_source Factorbook Download track Download number_of_intervals 4,404 bp_covered 35,232 output_type transcription factor binding sites all genome_build hg38 cell_type Hepatocyte biosample_type In vitro differentiated cells biosample_term_id CL:0000182 tissue_category Liver encode_experiment_id ENCSR252QYR biological_replicate 1, 2 technical_replicate 1_1, 1_2, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 42,516 downloaded_date 07/10/2024 release_date 11/23/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF409HJF_SCTGCAGT_sorted.bed.gz processed_file_md5 b6b26ba876e65a58507231a9bc2ca5e7 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF409HJF_SCTGCAGT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF409HJF_SCTGCAGT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF409HJF_SCTGCAGT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF409HJF_SCTGCAGT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 273bcc88b68c84fc1c69100baaf0bdaf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens hepatocyte originated from H9;Original_cell_type=hepatocyte;Lab=Bradley Bernstein, Broad;System=exocrine system,endocrine system,digestive system;ENCODE_BED_id=ENCFF409HJF;ENCODE_bigBed_id=ENCFF263BLJ;PMID=34755879;Motif_sequence=SCTGCAGT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=CL:0000182;is_hg38_lifted=no system_category Digestive life_stage Embryonic track_name Factorbook Hepatocyte (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR252QYR] [Life stage: Embryonic] [TFBS]
CTCF • GM06990 NGFTBXTHVVBUKW • Factorbook34755879 Motif finding GM06990 TFBS Show metadata Download track Track metadata identifier NGFTBXTHVVBUKW data_source Factorbook Download track Download number_of_intervals 14,290 bp_covered 300,090 output_type transcription factor binding sites all genome_build hg38 cell_type GM06990 biosample_type Cell line biosample_term_id EFO:0002783 tissue_category Blood encode_experiment_id ENCSR000DQW biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 281,820 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG_sorted.bed.gz processed_file_md5 bd6c99395ea10edade482889e9cdcf2a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF031WEA_TGAGCGCCCCCTGGTGTCCTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 28ab002ed38439fb1c144bb2e241e2f3 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM06990;Original_cell_type=GM06990;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF031WEA;ENCODE_bigBed_id=ENCFF471OQT;PMID=34755879;Motif_sequence=TGAGCGCCCCCTGGTGTCCTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002783;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM06990 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DQW] [TFBS]
CTCF • LNCAP NGFTBXVNIJYPSF • Factorbook34755879 Motif finding LNCAP TFBS Show metadata Download track Track metadata identifier NGFTBXVNIJYPSF data_source Factorbook Download track Download number_of_intervals 54,929 bp_covered 823,935 output_type transcription factor binding sites all genome_build hg38 cell_type LNCAP biosample_type Cell line biosample_term_id EFO:0002071 tissue_category Male Reproductive encode_experiment_id ENCSR673WZL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 771,866 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_GCCASYAGRKGGCGC_sorted.bed.gz processed_file_md5 9701b28640274a0cfbcd99332d66ac92 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_GCCASYAGRKGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF053EYR_GCCASYAGRKGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF053EYR_GCCASYAGRKGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF053EYR_GCCASYAGRKGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b70d4828e85444903e1014c683466eac data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens LNCAP treated with 10 nM 17_-hydroxy-5_-androstan-3-one for 4 hours;Original_cell_type=LNCAP;Lab=Michael Snyder, Stanford;System=reproductive system;ENCODE_BED_id=ENCFF053EYR;ENCODE_bigBed_id=ENCFF797RTH;PMID=34755879;Motif_sequence=GCCASYAGRKGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002071;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook LNCAP (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR673WZL] [Life stage: Adult] [TFBS]
CTCF • A549 NGFTBXWAJJACYI • Factorbook34755879 Motif finding A549 TFBS Show metadata Download track Track metadata identifier NGFTBXWAJJACYI data_source Factorbook Download track Download number_of_intervals 52,009 bp_covered 780,135 output_type transcription factor binding sites all genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR432AXE biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 742,646 downloaded_date 07/10/2024 release_date 12/20/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824SNC_GCCASCAGGGGGCGC_sorted.bed.gz processed_file_md5 2efd74ec4a294b4ce22f11be00676b00 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824SNC_GCCASCAGGGGGCGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824SNC_GCCASCAGGGGGCGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF824SNC_GCCASCAGGGGGCGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF824SNC_GCCASCAGGGGGCGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7dda49ea460fe7b3287c4c04e46e3d4b data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 8 hours;Original_cell_type=A549;Lab=Tim Reddy, Duke;System=respiratory system;ENCODE_BED_id=ENCFF824SNC;ENCODE_bigBed_id=ENCFF576PHN;PMID=34755879;Motif_sequence=GCCASCAGGGGGCGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook A549 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR432AXE] [Life stage: Adult] [TFBS]
CTCF • Gastroesophageal sphincter NGFTBXWJNE6E46 • Factorbook34755879 Motif finding Gastroesophageal sphincter TFBS Show metadata Download track Track metadata identifier NGFTBXWJNE6E46 data_source Factorbook Download track Download number_of_intervals 34,401 bp_covered 516,015 output_type transcription factor binding sites all genome_build hg38 cell_type Gastroesophageal sphincter biosample_type Tissue biosample_term_id UBERON:0004550 tissue_category Digestive encode_experiment_id ENCSR206ETG biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 542,381 downloaded_date 07/10/2024 release_date 07/11/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF950ZID_CTGCCCYCTRGTGGC_sorted.bed.gz processed_file_md5 54e24bd168d4d40b2f39515862997dbe wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF950ZID_CTGCCCYCTRGTGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF950ZID_CTGCCCYCTRGTGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF950ZID_CTGCCCYCTRGTGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF950ZID_CTGCCCYCTRGTGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4f3f9bc75007987345f30412a67626aa data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens gastroesophageal sphincter tissue female adult (53 years);Original_cell_type=gastroesophageal sphincter;Lab=Michael Snyder, Stanford;System=digestive system,musculature;ENCODE_BED_id=ENCFF950ZID;ENCODE_bigBed_id=ENCFF546QIK;PMID=34755879;Motif_sequence=CTGCCCYCTRGTGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0004550;is_hg38_lifted=no system_category Digestive life_stage Adult track_name Factorbook Gastroesophageal sphincter (repl. 1) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR206ETG] [Life stage: Adult] [TFBS]
CTCF • Lung NGFTBXYPXYGC5H • Factorbook34755879 Motif finding Lung TFBS Show metadata Download track Track metadata identifier NGFTBXYPXYGC5H data_source Factorbook Download track Download number_of_intervals 688 bp_covered 13,072 output_type transcription factor binding sites significant genome_build hg38 cell_type Lung biosample_type Tissue biosample_term_id UBERON:0002048 tissue_category Lung encode_experiment_id ENCSR972LYL biological_replicate 1 technical_replicate 1_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 11,344 downloaded_date 07/10/2024 release_date 12/08/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF647HXE_GCCRSCAGGGGGCGCYVBV_filtered.bed.gz processed_file_md5 1bf675a3c76546339d30e7019b38f768 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF647HXE_GCCRSCAGGGGGCGCYVBV_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF647HXE_GCCRSCAGGGGGCGCYVBV_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF647HXE_GCCRSCAGGGGGCGCYVBV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF647HXE_GCCRSCAGGGGGCGCYVBV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d64712954ae39e38dde99363a516ba19 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens upper lobe of left lung tissue female adult (51 years);Original_cell_type=upper lobe of left lung;Lab=Michael Snyder, Stanford;System=respiratory system;ENCODE_BED_id=ENCFF647HXE;ENCODE_bigBed_id=ENCFF962AIJ;PMID=34755879;Motif_sequence=GCCRSCAGGGGGCGCYVBV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=UBERON:0008952;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name Factorbook Lung (repl. 1) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR972LYL] [Life stage: Adult] [TFBS]
CTCF • OCI-LY1 NGFTBXZYRDVLAP • Factorbook34755879 Motif finding OCI-LY1 TFBS Show metadata Download track Track metadata identifier NGFTBXZYRDVLAP data_source Factorbook Download track Download number_of_intervals 78 bp_covered 1,638 output_type transcription factor binding sites significant genome_build hg38 cell_type OCI-LY1 biosample_type Cell line biosample_term_id EFO:0005907 tissue_category Immune encode_experiment_id ENCSR072EUE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,063 downloaded_date 07/10/2024 release_date 11/13/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF029TZI_CTGAGCGCMCCCTGVTGTCCT_filtered.bed.gz processed_file_md5 7227573201450a629a6a22acd1b2e014 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF029TZI_CTGAGCGCMCCCTGVTGTCCT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF029TZI_CTGAGCGCMCCCTGVTGTCCT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF029TZI_CTGAGCGCMCCCTGVTGTCCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF029TZI_CTGAGCGCMCCCTGVTGTCCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e9b14b1215d1c4e78473be447025455f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens OCI-LY1;Original_cell_type=OCI-LY1;Lab=Bradley Bernstein, Broad;System=skeletal system,immune system;ENCODE_BED_id=ENCFF029TZI;ENCODE_bigBed_id=ENCFF455ESK;PMID=34755879;Motif_sequence=CTGAGCGCMCCCTGVTGTCCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0005907;is_hg38_lifted=no system_category Lymphatic life_stage Adult track_name Factorbook OCI-LY1 (repl. 1, 2) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR072EUE] [Life stage: Adult] [TFBS]
CTCF • MCF-7 NGFTBY3DAYF6TD • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBY3DAYF6TD data_source Factorbook Download track Download number_of_intervals 16,408 bp_covered 246,120 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR000DMV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 282,228 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_CTGCWGCCTCTGKGC_sorted.bed.gz processed_file_md5 290d1159a85da5f2c20186ffea917344 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_CTGCWGCCTCTGKGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF163JHE_CTGCWGCCTCTGKGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF163JHE_CTGCWGCCTCTGKGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF163JHE_CTGCWGCCTCTGKGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c637d96d681740ce387a2c4fb185b898 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Vishwanath Iyer, UTA;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF163JHE;ENCODE_bigBed_id=ENCFF414SZG;PMID=34755879;Motif_sequence=CTGCWGCCTCTGKGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding CTCF transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DMV] [Life stage: Adult] [TFBS]
CTCF • GM12872 NGFTBY4DPBWTRP • Factorbook34755879 Motif finding GM12872 TFBS Show metadata Download track Track metadata identifier NGFTBY4DPBWTRP data_source Factorbook Download track Download number_of_intervals 58 bp_covered 870 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12872 biosample_type Cell line biosample_term_id EFO:0001159 tissue_category Blood encode_experiment_id ENCSR000DRN biological_replicate 1, 2, 3 technical_replicate 1_1, 2_1, 3_1 antibody CTCF assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 920 downloaded_date 07/10/2024 release_date 03/17/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF542FXV_RSCGCCMCCTRSYGG_filtered.bed.gz processed_file_md5 74cd4f61801d87e688718e169a6fc898 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF542FXV_RSCGCCMCCTRSYGG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF542FXV_RSCGCCMCCTRSYGG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF542FXV_RSCGCCMCCTRSYGG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF542FXV_RSCGCCMCCTRSYGG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4c6870ffb4b262c43547c07e9803be3c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12872;Original_cell_type=GM12872;Lab=John Stamatoyannopoulos, UW;System=immune system;ENCODE_BED_id=ENCFF542FXV;ENCODE_bigBed_id=ENCFF622AZZ;PMID=34755879;Motif_sequence=RSCGCCMCCTRSYGG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001159;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12872 (repl. 1, 2, 3) Motif finding CTCF transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR000DRN] [TFBS]