CUX1 • MCF-7 NGENCKRWKG4VKR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCKRWKG4VKR data_source ENCODE Download track Download number_of_intervals 13,434 bp_covered 5,345,274 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR017CEO biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CUX1 assay TF ChIP-seq file_format bed narrowPeak file_size 259,353 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF779ATB.bed.gz processed_file_md5 1af7f60c184be4f98746c93af365180b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF779ATB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF779ATB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF779ATB/@@download/ENCFF779ATB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF779ATB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b3ae883dd13fa5ce2380589ef6dac04d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR017CEO,GEO:GSE91415;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-14,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2, 3) TF ChIP-seq CUX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR017CEO] [Life stage: Adult] [TF ChIP-seq peaks]
CUX1 • GM12878 NGENCL65WLXZFQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCL65WLXZFQ data_source ENCODE Download track Download number_of_intervals 7,284 bp_covered 2,738,096 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay TF ChIP-seq file_format bed narrowPeak file_size 144,278 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF064TOM.bed.gz processed_file_md5 0303ef3c685b35856cf100e8182fa90a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF064TOM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF064TOM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF064TOM/@@download/ENCFF064TOM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF064TOM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a7c9e1c262f9b08c6b3ba186b2623b6c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:31969180;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003386,FactorBook:ENCSR000DYR,GEO:GSM1003604;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-08-20,2011-10-29;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq CUX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DYR] [Life stage: Adult] [TF ChIP-seq peaks]
CUX1 • MCF-7 NGENCLDDWDRPEK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCLDDWDRPEK data_source ENCODE Download track Download number_of_intervals 11,108 bp_covered 4,378,520 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR017CEO biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CUX1 assay TF ChIP-seq file_format bed narrowPeak file_size 215,247 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246YNN.bed.gz processed_file_md5 2b950725136a70ed1469675c3c536d78 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246YNN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF246YNN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF246YNN/@@download/ENCFF246YNN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF246YNN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d024188f494611b2fae9733f08eea3d5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR017CEO,GEO:GSE91415;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-14,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2, 3) TF ChIP-seq CUX1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR017CEO] [Life stage: Adult] [TF ChIP-seq peaks]
CUX1 • GM12878 NGENCLNOGTI4XY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCLNOGTI4XY data_source ENCODE Download track Download number_of_intervals 3,963 bp_covered 1,426,680 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYR biological_replicate 2 technical_replicate 2_1 antibody CUX1 assay TF ChIP-seq file_format bed narrowPeak file_size 78,520 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF575FJC.bed.gz processed_file_md5 24d081fe55595fd92f898dcde4e9ec2d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF575FJC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF575FJC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF575FJC/@@download/ENCFF575FJC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF575FJC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2fc03a4794f2e17709735bcc8e43182e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:31969180;External_resources=UCSC-ENCODE-hg19:wgEncodeEH003386,FactorBook:ENCSR000DYR,GEO:GSM1003604;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-08-20,2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) TF ChIP-seq CUX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DYR] [Life stage: Adult] [TF ChIP-seq peaks]
CUX1 • K562 NGENCNSNHMMN7I • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCNSNHMMN7I data_source ENCODE Download track Download number_of_intervals 5,654 bp_covered 1,918,560 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay TF ChIP-seq file_format bed narrowPeak file_size 112,821 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF942JWK.bed.gz processed_file_md5 0d010dcf0282a8953fc173526cc07501 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF942JWK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF942JWK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF942JWK/@@download/ENCFF942JWK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF942JWK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 07b6b523776b32c9860ea40eee0127c7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=FactorBook:ENCSR000EFO,GEO:GSM1003622,UCSC-ENCODE-hg19:wgEncodeEH003391;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-08-20,2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CUX1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EFO] [Life stage: Adult] [TF ChIP-seq peaks]
CUX1 • K562 NGENCWA3HW75B4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCWA3HW75B4 data_source ENCODE Download track Download number_of_intervals 6,609 bp_covered 4,335,932 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay TF ChIP-seq file_format bed narrowPeak file_size 132,380 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF845QIG.bed.gz processed_file_md5 cccc2e3175097f6b6b74c92d7e2f9466 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF845QIG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF845QIG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF845QIG/@@download/ENCFF845QIG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF845QIG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 afa3650f2ce1ce419f0cec0f276cfa53 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR178NTX,GEO:GSE105363;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq CUX1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR178NTX] [Life stage: Adult] [TF ChIP-seq peaks]
CUX1 • K562 NGENCXHKTTI33V • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCXHKTTI33V data_source ENCODE Download track Download number_of_intervals 3,378 bp_covered 2,178,296 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 2 technical_replicate 2_1 antibody CUX1 assay TF ChIP-seq file_format bed narrowPeak file_size 67,387 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF151HTG.bed.gz processed_file_md5 315920577af789650f8fa783ea1665d5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF151HTG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF151HTG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF151HTG/@@download/ENCFF151HTG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF151HTG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 09ddc7fd9201169733cf319dd51caeb4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR178NTX,GEO:GSE105363;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq CUX1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR178NTX] [Life stage: Adult] [TF ChIP-seq peaks]
CUX1 • K562 NGFTB4BC6SHB62 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB4BC6SHB62 data_source Factorbook Download track Download number_of_intervals 1,643 bp_covered 24,645 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 29,267 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_CCASYAGRKGGCRSY_sorted.bed.gz processed_file_md5 ac75ac35fca8bfe1ce8c71c1bc03a6df wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_CCASYAGRKGGCRSY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_CCASYAGRKGGCRSY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF838GFC_CCASYAGRKGGCRSY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF838GFC_CCASYAGRKGGCRSY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be3127d2ad4527aefeb5d12dd2fb830f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF838GFC;ENCODE_bigBed_id=ENCFF057AIX;PMID=34755879;Motif_sequence=CCASYAGRKGGCRSY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EFO] [Life stage: Adult] [TFBS]
CUX1 • K562 NGFTB62757EIMI • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB62757EIMI data_source Factorbook Download track Download number_of_intervals 1,793 bp_covered 19,723 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EFO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,172 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_TYATTGATYAN_sorted.bed.gz processed_file_md5 c279351367430cc9a4ff6841998de0a0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_TYATTGATYAN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF838GFC_TYATTGATYAN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF838GFC_TYATTGATYAN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF838GFC_TYATTGATYAN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 37f4c21fb667b0ebb45de9aeac2c0407 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF838GFC;ENCODE_bigBed_id=ENCFF057AIX;PMID=34755879;Motif_sequence=TYATTGATYAN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EFO] [Life stage: Adult] [TFBS]
CUX1 • K562 NGFTB632PFTQ5C • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB632PFTQ5C data_source Factorbook Download track Download number_of_intervals 3,935 bp_covered 74,765 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 56,543 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_WYDATCAATMATCWATMAW_sorted.bed.gz processed_file_md5 f58d4a6bf12bb2c93bf1495094dd4b7c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_WYDATCAATMATCWATMAW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_WYDATCAATMATCWATMAW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF136KLM_WYDATCAATMATCWATMAW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF136KLM_WYDATCAATMATCWATMAW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d0288a00ea7d8693a394f95bd32d167e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF136KLM;ENCODE_bigBed_id=ENCFF902MYN;PMID=34755879;Motif_sequence=WYDATCAATMATCWATMAW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR178NTX] [Life stage: Adult] [TFBS]
CUX1 • GM12878 NGFTB6KJ5PGWLI • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB6KJ5PGWLI data_source Factorbook Download track Download number_of_intervals 1,175 bp_covered 16,450 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,446 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_AANWRATCAATAAW_sorted.bed.gz processed_file_md5 6567bfebd6e214c010f4d3820edc0647 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_AANWRATCAATAAW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_AANWRATCAATAAW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF451AII_AANWRATCAATAAW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF451AII_AANWRATCAATAAW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b0cb484f9665c2d7c24b3004bb265fc2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF451AII;ENCODE_bigBed_id=ENCFF064TOM;PMID=34755879;Motif_sequence=AANWRATCAATAAW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYR] [TFBS]
CUX1 • MCF-7 NGFTBADI26H5P5 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBADI26H5P5 data_source Factorbook Download track Download number_of_intervals 8,268 bp_covered 124,020 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR017CEO biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 119,053 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_WTGATTGATWGATKR_sorted.bed.gz processed_file_md5 1484c2d6c2a1514f23e94a3e15005feb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_WTGATTGATWGATKR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_WTGATTGATWGATKR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF184PHK_WTGATTGATWGATKR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF184PHK_WTGATTGATWGATKR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9ba11d3e271c96a7fc3336fbc8cf1755 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF184PHK;ENCODE_bigBed_id=ENCFF779ATB;PMID=34755879;Motif_sequence=WTGATTGATWGATKR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 2, 3) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR017CEO] [Life stage: Adult] [TFBS]
CUX1 • GM12878 NGFTBE2M2O2QG6 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBE2M2O2QG6 data_source Factorbook Download track Download number_of_intervals 3,294 bp_covered 46,116 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 53,233 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_BYCCCWGGGGACYH_sorted.bed.gz processed_file_md5 023239464900afbe0027696208c4888c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_BYCCCWGGGGACYH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_BYCCCWGGGGACYH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF451AII_BYCCCWGGGGACYH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF451AII_BYCCCWGGGGACYH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8ef2767435eb701e16167ad052e9079d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF451AII;ENCODE_bigBed_id=ENCFF064TOM;PMID=34755879;Motif_sequence=BYCCCWGGGGACYH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYR] [TFBS]
CUX1 • K562 NGFTBFPFVPJCV3 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBFPFVPJCV3 data_source Factorbook Download track Download number_of_intervals 2,112 bp_covered 63,360 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 43,736 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT_sorted.bed.gz processed_file_md5 6da35e1b87f3ef8abfcd32007dcc5c1c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a82ce450003bec1509cb66eac2c29a88 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF136KLM;ENCODE_bigBed_id=ENCFF902MYN;PMID=34755879;Motif_sequence=AGCCCCTATTCAAGATGGAGTYRCTCTGGT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR178NTX] [Life stage: Adult] [TFBS]
CUX1 • K562 NGFTBHFMK4G6AX • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBHFMK4G6AX data_source Factorbook Download track Download number_of_intervals 473 bp_covered 14,190 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,823 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT_filtered.bed.gz processed_file_md5 4376600ee9541293697f5ffd43f1f89c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF136KLM_AGCCCCTATTCAAGATGGAGTYRCTCTGGT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a82ce450003bec1509cb66eac2c29a88 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF136KLM;ENCODE_bigBed_id=ENCFF902MYN;PMID=34755879;Motif_sequence=AGCCCCTATTCAAGATGGAGTYRCTCTGGT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR178NTX] [Life stage: Adult] [TFBS]
CUX1 • MCF-7 NGFTBIJZYRBZVP • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBIJZYRBZVP data_source Factorbook Download track Download number_of_intervals 4,044 bp_covered 60,660 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR017CEO biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 56,913 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_GATAGATRATWGATA_sorted.bed.gz processed_file_md5 75fbade3c6d12cab02ca8cd25a83f3f5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_GATAGATRATWGATA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_GATAGATRATWGATA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF184PHK_GATAGATRATWGATA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF184PHK_GATAGATRATWGATA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bcd654ea2cff3812cc89fd42d01d62c2 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF184PHK;ENCODE_bigBed_id=ENCFF779ATB;PMID=34755879;Motif_sequence=GATAGATRATWGATA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 2, 3) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR017CEO] [Life stage: Adult] [TFBS]
CUX1 • K562 NGFTBM2BXRXZRG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBM2BXRXZRG data_source Factorbook Download track Download number_of_intervals 4 bp_covered 76 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 396 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_WYDATCAATMATCWATMAW_filtered.bed.gz processed_file_md5 5e97714bacf7300ffbb9af91bd5f200f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_WYDATCAATMATCWATMAW_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_WYDATCAATMATCWATMAW_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF136KLM_WYDATCAATMATCWATMAW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF136KLM_WYDATCAATMATCWATMAW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d0288a00ea7d8693a394f95bd32d167e data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF136KLM;ENCODE_bigBed_id=ENCFF902MYN;PMID=34755879;Motif_sequence=WYDATCAATMATCWATMAW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR178NTX] [Life stage: Adult] [TFBS]
CUX1 • GM12878 NGFTBM4L5OXYL7 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBM4L5OXYL7 data_source Factorbook Download track Download number_of_intervals 2,347 bp_covered 25,817 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 32,937 downloaded_date 07/10/2024 release_date 08/20/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_DGYSTGRGAAM_sorted.bed.gz processed_file_md5 47fcf878408d4946240cca4668509a55 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_DGYSTGRGAAM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF451AII_DGYSTGRGAAM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF451AII_DGYSTGRGAAM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF451AII_DGYSTGRGAAM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 1d52321be911e58d23215c539d703290 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF451AII;ENCODE_bigBed_id=ENCFF064TOM;PMID=34755879;Motif_sequence=DGYSTGRGAAM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYR] [TFBS]
CUX1 • K562 NGFTBMUJVPJ5WE • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBMUJVPJ5WE data_source Factorbook Download track Download number_of_intervals 106 bp_covered 1,696 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR178NTX biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,316 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_TGTCAGAGGCGTTTGA_filtered.bed.gz processed_file_md5 d616f857f46898da29ebb3cc389b2623 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_TGTCAGAGGCGTTTGA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF136KLM_TGTCAGAGGCGTTTGA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF136KLM_TGTCAGAGGCGTTTGA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF136KLM_TGTCAGAGGCGTTTGA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 beb66c27e30b34de105dd8aca7e7cc10 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF136KLM;ENCODE_bigBed_id=ENCFF902MYN;PMID=34755879;Motif_sequence=TGTCAGAGGCGTTTGA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding CUX1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR178NTX] [Life stage: Adult] [TFBS]
CUX1 • MCF-7 NGFTBQRC3W7WKQ • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBQRC3W7WKQ data_source Factorbook Download track Download number_of_intervals 9,143 bp_covered 100,573 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR017CEO biological_replicate 2, 3 technical_replicate 2_1, 3_1 antibody CUX1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 109,525 downloaded_date 07/10/2024 release_date 06/14/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_TAATCAATAAW_sorted.bed.gz processed_file_md5 bdbfb6806136ba7558b7db3512028dc4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_TAATCAATAAW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF184PHK_TAATCAATAAW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF184PHK_TAATCAATAAW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF184PHK_TAATCAATAAW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6c3c1b2df1b094fc44469b34c8355c05 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF184PHK;ENCODE_bigBed_id=ENCFF779ATB;PMID=34755879;Motif_sequence=TAATCAATAAW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 2, 3) Motif finding CUX1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR017CEO] [Life stage: Adult] [TFBS]