DDX20 • MCF-7 NGFTBRSZQSHWR5 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBRSZQSHWR5 data_source Factorbook Download track Download number_of_intervals 1,071 bp_covered 22,491 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR330ADN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 21,722 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_TGGYYVNNDBNBCTGYCMVTC_sorted.bed.gz processed_file_md5 666ff06098f79827236909c8397f1814 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_TGGYYVNNDBNBCTGYCMVTC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_TGGYYVNNDBNBCTGYCMVTC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF565XMS_TGGYYVNNDBNBCTGYCMVTC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF565XMS_TGGYYVNNDBNBCTGYCMVTC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ee9e45f4109e6daa00dfd9f3d98e2bf0 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF565XMS;ENCODE_bigBed_id=ENCFF142TOQ;PMID=34755879;Motif_sequence=TGGYYVNNDBNBCTGYCMVTC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR330ADN] [Life stage: Adult] [TFBS]
DDX20 • MCF-7 NGFTBSNT35F6ZI • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBSNT35F6ZI data_source Factorbook Download track Download number_of_intervals 2,854 bp_covered 39,956 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR330ADN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 48,791 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_ARGBCCCGCCYCYY_sorted.bed.gz processed_file_md5 6ac493bbf73acaddba06fde5420dd229 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_ARGBCCCGCCYCYY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_ARGBCCCGCCYCYY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF565XMS_ARGBCCCGCCYCYY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF565XMS_ARGBCCCGCCYCYY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 364d20890018f3e3d89af500af9ec389 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF565XMS;ENCODE_bigBed_id=ENCFF142TOQ;PMID=34755879;Motif_sequence=ARGBCCCGCCYCYY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR330ADN] [Life stage: Adult] [TFBS]
DDX20 • K562 NGFTBSWZKPX4LD • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBSWZKPX4LD data_source Factorbook Download track Download number_of_intervals 135 bp_covered 2,835 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR382AIB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 2,318 downloaded_date 07/10/2024 release_date 02/16/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF748EAO_GACAGTRARAGAGATCTGACY_filtered.bed.gz processed_file_md5 ef8caacc8393f05e7654a081f7b78275 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF748EAO_GACAGTRARAGAGATCTGACY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF748EAO_GACAGTRARAGAGATCTGACY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF748EAO_GACAGTRARAGAGATCTGACY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF748EAO_GACAGTRARAGAGATCTGACY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2e3bce6b59d7cdbf1118c7483d38e7fc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing DDX20;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF748EAO;ENCODE_bigBed_id=ENCFF373BEC;PMID=34755879;Motif_sequence=GACAGTRARAGAGATCTGACY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR382AIB] [Life stage: Adult] [TFBS]
DDX20 • K562 NGFTBT4L5L6G44 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBT4L5L6G44 data_source Factorbook Download track Download number_of_intervals 287 bp_covered 6,027 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR446LAV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 4,229 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA_filtered.bed.gz processed_file_md5 0979a843eaf20f486e953eecd30ac6eb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 346762159e51ff304c146bfaa29de76d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF746TUQ;ENCODE_bigBed_id=ENCFF205RDN;PMID=34755879;Motif_sequence=ATCCACCCCTTGTTTAGCATA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR446LAV] [Life stage: Adult] [TFBS]
DDX20 • K562 NGFTBTODO3IQII • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBTODO3IQII data_source Factorbook Download track Download number_of_intervals 2,002 bp_covered 26,026 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR382AIB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 29,204 downloaded_date 07/10/2024 release_date 02/16/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF748EAO_AAGATGGAGTYRC_sorted.bed.gz processed_file_md5 172acee177853fea1138aa3f4d1c3e84 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF748EAO_AAGATGGAGTYRC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF748EAO_AAGATGGAGTYRC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF748EAO_AAGATGGAGTYRC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF748EAO_AAGATGGAGTYRC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a0bfa5af3f38ce211d9d84caaf84192a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing DDX20;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF748EAO;ENCODE_bigBed_id=ENCFF373BEC;PMID=34755879;Motif_sequence=AAGATGGAGTYRC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR382AIB] [Life stage: Adult] [TFBS]
DDX20 • K562 NGFTBVBVWWFHWJ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBVBVWWFHWJ data_source Factorbook Download track Download number_of_intervals 3,958 bp_covered 55,412 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR446LAV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 59,748 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF746TUQ_BRRCCAATSRGARS_sorted.bed.gz processed_file_md5 7f1a65e4680be59af333bd01cd31d7d8 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF746TUQ_BRRCCAATSRGARS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF746TUQ_BRRCCAATSRGARS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF746TUQ_BRRCCAATSRGARS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF746TUQ_BRRCCAATSRGARS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ab7dac6ee988a009f207e9ca6c30e6df data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF746TUQ;ENCODE_bigBed_id=ENCFF205RDN;PMID=34755879;Motif_sequence=BRRCCAATSRGARS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR446LAV] [Life stage: Adult] [TFBS]
DDX20 • K562 NGFTBVYM3XWRD6 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBVYM3XWRD6 data_source Factorbook Download track Download number_of_intervals 482 bp_covered 10,122 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR382AIB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,658 downloaded_date 07/10/2024 release_date 02/16/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT_filtered.bed.gz processed_file_md5 d6ee136dc369ed43f90254c4ac2264f6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be3b6cf98b09408a9d36739945f7cf72 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing DDX20;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF748EAO;ENCODE_bigBed_id=ENCFF373BEC;PMID=34755879;Motif_sequence=GCCTYATTTTACCCAGCCCCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR382AIB] [Life stage: Adult] [TFBS]
DDX20 • K562 NGFTBWH5XXGPKS • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBWH5XXGPKS data_source Factorbook Download track Download number_of_intervals 848 bp_covered 17,808 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR446LAV biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 16,306 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA_sorted.bed.gz processed_file_md5 b39b4ef6f161302b3bc2a095c05e38c0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF746TUQ_ATCCACCCCTTGTTTAGCATA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 346762159e51ff304c146bfaa29de76d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF746TUQ;ENCODE_bigBed_id=ENCFF205RDN;PMID=34755879;Motif_sequence=ATCCACCCCTTGTTTAGCATA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR446LAV] [Life stage: Adult] [TFBS]
DDX20 • K562 NGFTBXCMEAFLQY • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBXCMEAFLQY data_source Factorbook Download track Download number_of_intervals 1,096 bp_covered 23,016 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR382AIB biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 21,196 downloaded_date 07/10/2024 release_date 02/16/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT_sorted.bed.gz processed_file_md5 53017056353b0affe1ed37bd44a7c776 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF748EAO_GCCTYATTTTACCCAGCCCCT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be3b6cf98b09408a9d36739945f7cf72 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 stably expressing DDX20;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF748EAO;ENCODE_bigBed_id=ENCFF373BEC;PMID=34755879;Motif_sequence=GCCTYATTTTACCCAGCCCCT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR382AIB] [Life stage: Adult] [TFBS]
DDX20 • MCF-7 NGFTBZ24T6US3S • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBZ24T6US3S data_source Factorbook Download track Download number_of_intervals 1,568 bp_covered 17,248 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR330ADN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DDX20 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 22,907 downloaded_date 07/10/2024 release_date 06/29/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_YSATTGGYYRV_sorted.bed.gz processed_file_md5 47bce7bbaeb3de815c862b55a48e7569 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_YSATTGGYYRV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF565XMS_YSATTGGYYRV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF565XMS_YSATTGGYYRV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF565XMS_YSATTGGYYRV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c450557eb43885bf3025d0f3c26c0326 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF565XMS;ENCODE_bigBed_id=ENCFF142TOQ;PMID=34755879;Motif_sequence=YSATTGGYYRV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding DDX20 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR330ADN] [Life stage: Adult] [TFBS]
DDX21 • K562 NGENCI4YX4N2UB • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCI4YX4N2UB data_source ENCODE Download track Download number_of_intervals 6,165 bp_covered 322,312 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR040QLV biological_replicate 1 technical_replicate 1_1 antibody DDX21 assay eCLIP file_format bed narrowPeak file_size 106,752 downloaded_date 06/10/2020 release_date 08/16/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF159PUC.bed.gz processed_file_md5 ae3c10ab93cf39b0026e9e86ad3f001b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF159PUC.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF159PUC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF159PUC/@@download/ENCFF159PUC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF159PUC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 43925c5a8a141dc13bc8440f39f596db data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE176736;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=284x4000fix_01.basedon_284x4000fix_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP DDX21 peaks (narrowPeak) [Experiment: ENCSR040QLV] [Life stage: Adult] [RNA binding]
DDX21 • K562 NGENCYP2O6ILWN • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCYP2O6ILWN data_source ENCODE Download track Download number_of_intervals 5,931 bp_covered 220,134 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR040QLV biological_replicate 2 technical_replicate 2_1 antibody DDX21 assay eCLIP file_format bed narrowPeak file_size 90,957 downloaded_date 06/10/2020 release_date 08/16/2018 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF028CQB.bed.gz processed_file_md5 4eea693aa652045755c8c7a3e825e34a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF028CQB.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF028CQB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF028CQB/@@download/ENCFF028CQB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF028CQB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1724c3c74188090173ae08b509a04e2c data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE176736;Project=ENCODE;Award=U41HG009889;Experiment_date_released=2018-08-30;Submitted_track_name=284x4000fix_02.basedon_284x4000fix_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP DDX21 peaks (narrowPeak) [Experiment: ENCSR040QLV] [Life stage: Adult] [RNA binding]
DDX24 • K562 NGENC7OX7GICFY • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENC7OX7GICFY data_source ENCODE Download track Download number_of_intervals 49,803 bp_covered 2,351,579 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR999WKT biological_replicate 2 technical_replicate 2_1 antibody DDX24 assay eCLIP file_format bed narrowPeak file_size 835,017 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF533TMN.bed.gz processed_file_md5 1329e63dee2d6340a2d4f9c5af1e4760 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF533TMN.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF533TMN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF533TMN/@@download/ENCFF533TMN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF533TMN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3e9bd79a71854a75fe50192acf863e1f data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92226;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=483_02.basedon_483_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP DDX24 peaks (narrowPeak) [Experiment: ENCSR999WKT] [Life stage: Adult] [RNA binding]
DDX24 • K562 NGENCTYVNHNTVE • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCTYVNHNTVE data_source ENCODE Download track Download number_of_intervals 44,427 bp_covered 2,155,284 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR999WKT biological_replicate 1 technical_replicate 1_1 antibody DDX24 assay eCLIP file_format bed narrowPeak file_size 752,063 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF517ZWJ.bed.gz processed_file_md5 cf9797e86f1c22aa8670924a2305ed71 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF517ZWJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF517ZWJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF517ZWJ/@@download/ENCFF517ZWJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF517ZWJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a7b2a32e49d4e661dd32ab1c293deeb9 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92226;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=483_01.basedon_483_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP DDX24 peaks (narrowPeak) [Experiment: ENCSR999WKT] [Life stage: Adult] [RNA binding]
DDX3X • HepG2 NGENC3LCG7GHFO • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENC3LCG7GHFO data_source ENCODE Download track Download number_of_intervals 30,815 bp_covered 1,821,005 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR648LAH biological_replicate 1 technical_replicate 1_1 antibody DDX3X assay eCLIP file_format bed narrowPeak file_size 610,328 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF562CTF.bed.gz processed_file_md5 a83e0ee0a706942ee75efe183150e3c7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF562CTF.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF562CTF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF562CTF/@@download/ENCFF562CTF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF562CTF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 da50877d9d003e3bff4db2786a568a35 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=GEO:GSE91951,RBPImage:DDX3X;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=492_01.basedon_492_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP DDX3X peaks (narrowPeak) [Experiment: ENCSR648LAH] [Life stage: Child] [RNA binding]
DDX3X • K562 NGENC4JBEXU5GO • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENC4JBEXU5GO data_source ENCODE Download track Download number_of_intervals 24,318 bp_covered 1,555,421 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR930BZL biological_replicate 2 technical_replicate 2_1 antibody DDX3X assay eCLIP file_format bed narrowPeak file_size 485,984 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF346EYN.bed.gz processed_file_md5 45719e7f55812abe62b4558d86fa0d7b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF346EYN.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF346EYN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF346EYN/@@download/ENCFF346EYN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF346EYN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2321c8d112ace1c44f368fa72adfd007 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92175;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=350_02.basedon_350_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP DDX3X peaks (narrowPeak) [Experiment: ENCSR930BZL] [Life stage: Adult] [RNA binding]
DDX3X • HepG2 NGENCGZYBKODES • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCGZYBKODES data_source ENCODE Download track Download number_of_intervals 21,716 bp_covered 1,161,103 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR648LAH biological_replicate 2 technical_replicate 2_1 antibody DDX3X assay eCLIP file_format bed narrowPeak file_size 397,833 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF336PLF.bed.gz processed_file_md5 49fc6584a5b5366af36079d669e4704d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF336PLF.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF336PLF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF336PLF/@@download/ENCFF336PLF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF336PLF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 62476b7bb141f75f22fa1a3b105d370d data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=GEO:GSE91951,RBPImage:DDX3X;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2016-04-26;Submitted_track_name=492_02.basedon_492_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP DDX3X peaks (narrowPeak) [Experiment: ENCSR648LAH] [Life stage: Child] [RNA binding]
DDX3X • K562 NGENCVJDSR4GZM • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCVJDSR4GZM data_source ENCODE Download track Download number_of_intervals 17,671 bp_covered 1,128,590 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR930BZL biological_replicate 1 technical_replicate 1_1 antibody DDX3X assay eCLIP file_format bed narrowPeak file_size 354,806 downloaded_date 06/04/2018 release_date 12/03/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF565FNW.bed.gz processed_file_md5 b6cd3a4f7929f145916c8851018f1769 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF565FNW.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF565FNW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF565FNW/@@download/ENCFF565FNW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF565FNW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0a0562dd10f419fbe5387a0379451ee2 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE92175;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-11-09;Submitted_track_name=350_01.basedon_350_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP DDX3X peaks (narrowPeak) [Experiment: ENCSR930BZL] [Life stage: Adult] [RNA binding]
DDX42 • K562 NGENCE5MVJPZBD • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCE5MVJPZBD data_source ENCODE Download track Download number_of_intervals 6,345 bp_covered 385,269 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR576SHT biological_replicate 2 technical_replicate 2_1 antibody DDX42 assay eCLIP file_format bed narrowPeak file_size 104,837 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF868JHW.bed.gz processed_file_md5 90aa814b5d14de148d94e15b45ce5c09 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF868JHW.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF868JHW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF868JHW/@@download/ENCFF868JHW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF868JHW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 004e0881697e81c3c94d1dbab41567b7 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91887;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=241_02.basedon_241_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) eCLIP DDX42 peaks (narrowPeak) [Experiment: ENCSR576SHT] [Life stage: Adult] [RNA binding]
DDX42 • K562 NGENCGAOAXBYPJ • ENCODE22955616 | 41168159 | 31713622 eCLIP K562 RNA binding Show metadata Download track Track metadata identifier NGENCGAOAXBYPJ data_source ENCODE Download track Download number_of_intervals 5,310 bp_covered 322,971 output_type peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR576SHT biological_replicate 1 technical_replicate 1_1 antibody DDX42 assay eCLIP file_format bed narrowPeak file_size 86,671 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF821OQU.bed.gz processed_file_md5 96cb1e0269246e7ae20b354ead88fad1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF821OQU.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF821OQU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF821OQU/@@download/ENCFF821OQU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF821OQU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ebaa091f7adb7407ccd5c82bc53d8698 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=adult 53 years;Reference=PMID:32252787;External_resources=GEO:GSE91887;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=241_01.basedon_241_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=leukocyte,cancer cell,hematopoietic cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) eCLIP DDX42 peaks (narrowPeak) [Experiment: ENCSR576SHT] [Life stage: Adult] [RNA binding]