DPF2 • HepG2 NGENCA3CKSRBNP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCA3CKSRBNP data_source ENCODE Download track Download number_of_intervals 12,282 bp_covered 5,208,324 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR813QEO biological_replicate 2 technical_replicate 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 223,857 downloaded_date 06/12/2022 release_date 07/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF698RYQ.bed.gz processed_file_md5 838eae06092b6cceac77b28c8e572084 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF698RYQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF698RYQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF698RYQ/@@download/ENCFF698RYQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF698RYQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2db9726e0e583ad1946cefde3c6f4fd1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DPF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170220;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=endocrine system,digestive system,exocrine system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR813QEO] [Life stage: Child] [TF ChIP-seq peaks]
DPF2 • K562 NGENCAEGCFC7G4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCAEGCFC7G4 data_source ENCODE Download track Download number_of_intervals 7,518 bp_covered 2,523,736 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 3 technical_replicate 3_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 149,310 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF669WWV.bed.gz processed_file_md5 47b5e512671dc12a261a81d70e41d8cb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF669WWV.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF669WWV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF669WWV/@@download/ENCFF669WWV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF669WWV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9649cea2b87aad998e21e037519c4e30 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE127533;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-11-14,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 3) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR219BXP] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • HepG2 NGENCAIBJZPF4T • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCAIBJZPF4T data_source ENCODE Download track Download number_of_intervals 15,271 bp_covered 6,374,096 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR813QEO biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 282,117 downloaded_date 06/12/2022 release_date 07/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF700HHQ.bed.gz processed_file_md5 139eb63e38556a52e5887e77ed7d7794 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF700HHQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF700HHQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF700HHQ/@@download/ENCFF700HHQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF700HHQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b8c9bf91baf6239b66be4760986437d7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DPF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170220;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=endocrine system,digestive system,exocrine system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR813QEO] [Life stage: Child] [TF ChIP-seq peaks]
DPF2 • K562 NGENCAILKYZTP3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCAILKYZTP3 data_source ENCODE Download track Download number_of_intervals 48,502 bp_covered 23,843,033 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 950,183 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF775HUO.bed.gz processed_file_md5 34c4a4bd0424f71c584ad13c3dfe8b80 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF775HUO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF775HUO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF775HUO/@@download/ENCFF775HUO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF775HUO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1d1fcd75c4756794c34173b62f31af39 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92006;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR715CCR] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • GM12878 NGENCE5SYIZ5OY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCE5SYIZ5OY data_source ENCODE Download track Download number_of_intervals 43,812 bp_covered 22,794,531 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR509FWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 852,990 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF985QFG.bed.gz processed_file_md5 fd4aa51e0fd02db9118e0b33a4fa8578 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF985QFG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF985QFG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF985QFG/@@download/ENCFF985QFG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF985QFG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dfdfd664f45e1f4e57e1fe13a27e63ac data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE105568;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-05-17,2016-09-20;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq DPF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR509FWH] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • MCF-7 NGENCMPYNKDCLA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCMPYNKDCLA data_source ENCODE Download track Download number_of_intervals 10,528 bp_covered 3,382,749 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 2 technical_replicate 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 208,563 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF494MWK.bed.gz processed_file_md5 f59210b9b1dfb0f70b9da3bc5adafdf3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF494MWK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF494MWK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF494MWK/@@download/ENCFF494MWK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF494MWK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7a918cdd13f84d4f8118ad534aea4d02 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91598;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR234VCE] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • K562 NGENCMVW6BWLTD • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCMVW6BWLTD data_source ENCODE Download track Download number_of_intervals 33,802 bp_covered 14,939,869 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 1 technical_replicate 1_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 662,303 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF757LJB.bed.gz processed_file_md5 d8b8cadca936f03ce205473fa0789d16 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF757LJB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF757LJB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF757LJB/@@download/ENCFF757LJB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF757LJB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c722340b4dacbeb002ee1b58597cd449 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92006;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR715CCR] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • K562 NGENCOMXJJQXTN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCOMXJJQXTN data_source ENCODE Download track Download number_of_intervals 30,877 bp_covered 14,046,172 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 2 technical_replicate 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 585,194 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF334KIW.bed.gz processed_file_md5 42f0623eb59257019e801943fbdac3c3 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF334KIW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF334KIW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF334KIW/@@download/ENCFF334KIW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF334KIW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 debae0e0f6fcc564010f577b72095243 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92006;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR715CCR] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • K562 NGENCOWKOGOGB7 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCOWKOGOGB7 data_source ENCODE Download track Download number_of_intervals 16,213 bp_covered 6,672,867 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 328,882 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF759XGF.bed.gz processed_file_md5 f295c1e8b976b4d02faa73c8ad228071 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF759XGF.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF759XGF.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF759XGF/@@download/ENCFF759XGF.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF759XGF.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 bc2fc7e71f70d6873e1777674b0768de data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE127533;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-11-14,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 3) TF ChIP-seq DPF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR219BXP] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • MCF-7 NGENCP3MBC2BZJ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCP3MBC2BZJ data_source ENCODE Download track Download number_of_intervals 16,169 bp_covered 5,701,018 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 1 technical_replicate 1_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 319,712 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF548UKY.bed.gz processed_file_md5 bcd25096d2ba9611c2206a0fae2f0ab4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF548UKY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF548UKY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF548UKY/@@download/ENCFF548UKY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF548UKY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7ba52a84554f1a3a517e0e93aa5d8f20 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91598;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR234VCE] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • GM12878 NGENCP7UUZ5SWL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCP7UUZ5SWL data_source ENCODE Download track Download number_of_intervals 25,375 bp_covered 11,022,441 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR509FWH biological_replicate 1 technical_replicate 1_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 493,119 downloaded_date 06/12/2022 release_date 12/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF008XWM.bed.gz processed_file_md5 24e80fdb53931cfe76d39d875f8ca7f8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF008XWM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF008XWM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF008XWM/@@download/ENCFF008XWM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF008XWM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f258b3cf9ab263e777b25a0c274f0e40 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=GEO:GSE105568;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-05-17,2016-09-20;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,B cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR509FWH] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • MCF-7 NGENCPDPB7LCUY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCPDPB7LCUY data_source ENCODE Download track Download number_of_intervals 19,926 bp_covered 7,017,010 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 399,463 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF712EXQ.bed.gz processed_file_md5 1811cf4f390a9d69b49edbe0d32ffc75 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF712EXQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF712EXQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF712EXQ/@@download/ENCFF712EXQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF712EXQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 3fc61baababa0b3ed7141e42d5ca94f8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91598;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR234VCE] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • K562 NGENCPMXCCA37V • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCPMXCCA37V data_source ENCODE Download track Download number_of_intervals 23,376 bp_covered 9,751,479 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1 technical_replicate 1_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 444,229 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF712IMH.bed.gz processed_file_md5 19e5b6bce8e22ccf177941e3b1c8baac wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF712IMH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF712IMH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF712IMH/@@download/ENCFF712IMH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF712IMH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 de4960f0d6c0ff4c26c44687d947da06 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE127533;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-11-14,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR219BXP] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • K562 NGENCR3OX4KJ7P • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCR3OX4KJ7P data_source ENCODE Download track Download number_of_intervals 23,790 bp_covered 10,272,030 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 475,707 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF739JDE.bed.gz processed_file_md5 c53898a865d54d22f7ab89986a36287c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF739JDE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF739JDE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF739JDE/@@download/ENCFF739JDE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF739JDE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 fbc1c8fcc6e11e4d8d9f9ea03e7cfff4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE127533;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-11-14,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 3) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR219BXP] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • K562 NGENCUCP42GOU3 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCUCP42GOU3 data_source ENCODE Download track Download number_of_intervals 44,435 bp_covered 21,644,057 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 872,119 downloaded_date 06/12/2022 release_date 02/11/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF352FAE.bed.gz processed_file_md5 0ac0f6d636d00610759bc455582c70e2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF352FAE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF352FAE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF352FAE/@@download/ENCFF352FAE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF352FAE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7dd662e8a014a7bd5888fcd22db1ccd7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=GEO:GSE92006;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,cancer cell,leukocyte;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K-562, K562 cell,K-562 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq DPF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR715CCR] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • MCF-7 NGENCUH42UKKFB • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCUH42UKKFB data_source ENCODE Download track Download number_of_intervals 17,662 bp_covered 6,113,520 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 356,033 downloaded_date 06/12/2022 release_date 03/20/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF345KOL.bed.gz processed_file_md5 2744b33216add7b20be8d1ae699d0fe8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF345KOL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF345KOL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF345KOL/@@download/ENCFF345KOL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF345KOL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6e2344d782788f15f23a80e65468eb34 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=adult 69 years;Reference=PMID:32728046;External_resources=GEO:GSE91598;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-04-22,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF7,MCF-7 cell;Analysis_title=ENCODE4 v1.7.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq DPF2 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR234VCE] [Life stage: Adult] [TF ChIP-seq peaks]
DPF2 • HepG2 NGENCXF5T4WXER • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCXF5T4WXER data_source ENCODE Download track Download number_of_intervals 6,134 bp_covered 2,625,915 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR813QEO biological_replicate 1 technical_replicate 1_1 antibody DPF2 assay TF ChIP-seq file_format bed narrowPeak file_size 112,408 downloaded_date 06/12/2022 release_date 07/04/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF687YSJ.bed.gz processed_file_md5 f4ced086c891e112606689dd17e75ce0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF687YSJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF687YSJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF687YSJ/@@download/ENCFF687YSJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF687YSJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5c9de89a58467dbc58f3f6b98cde6b36 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DPF2;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170220;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=endocrine system,digestive system,exocrine system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq DPF2 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR813QEO] [Life stage: Child] [TF ChIP-seq peaks]
DPF2 • K562 NGFTB2UR64X6SG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB2UR64X6SG data_source Factorbook Download track Download number_of_intervals 779 bp_covered 14,801 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 9,755 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF716PXH_TGAGBRCCTACTRTGTGCY_filtered.bed.gz processed_file_md5 5f1f1113a6a1e86d0d59fb593a88cb1f wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF716PXH_TGAGBRCCTACTRTGTGCY_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF716PXH_TGAGBRCCTACTRTGTGCY_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF716PXH_TGAGBRCCTACTRTGTGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF716PXH_TGAGBRCCTACTRTGTGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0e354aabbe9afcae0e08857d9a80c0ba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF716PXH;ENCODE_bigBed_id=ENCFF739JDE;PMID=34755879;Motif_sequence=TGAGBRCCTACTRTGTGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding DPF2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR219BXP] [Life stage: Adult] [TFBS]
DPF2 • K562 NGFTB4CDUUCZ4B • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB4CDUUCZ4B data_source Factorbook Download track Download number_of_intervals 18,452 bp_covered 147,616 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 153,607 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_RTGACTCA_sorted.bed.gz processed_file_md5 3c0c440ecaa112cd572fca827ec55952 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_RTGACTCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_RTGACTCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF542HJS_RTGACTCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF542HJS_RTGACTCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 be318de33cf88875d45f1eaedb2f1860 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF542HJS;ENCODE_bigBed_id=ENCFF775HUO;PMID=34755879;Motif_sequence=RTGACTCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR715CCR] [Life stage: Adult] [TFBS]
DPF2 • K562 NGFTB543NPTGMG • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB543NPTGMG data_source Factorbook Download track Download number_of_intervals 18,387 bp_covered 330,966 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 274,153 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_BCTTATCTBHNNNNNVCA_sorted.bed.gz processed_file_md5 e140fd77f4fb77fd0d5bee4fb61e30a1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_BCTTATCTBHNNNNNVCA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_BCTTATCTBHNNNNNVCA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF542HJS_BCTTATCTBHNNNNNVCA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF542HJS_BCTTATCTBHNNNNNVCA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 ee83d60c3660adc41908963fe740fb87 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF542HJS;ENCODE_bigBed_id=ENCFF775HUO;PMID=34755879;Motif_sequence=BCTTATCTBHNNNNNVCA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR715CCR] [Life stage: Adult] [TFBS]