DPF2 • MCF-7 NGFTB5R3VRKVGJ • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTB5R3VRKVGJ data_source Factorbook Download track Download number_of_intervals 8,948 bp_covered 98,428 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 122,704 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_DSCCYCAGGSM_sorted.bed.gz processed_file_md5 712c5be9bd609c3282663a5bd85323bc wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_DSCCYCAGGSM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_DSCCYCAGGSM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF870ORM_DSCCYCAGGSM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF870ORM_DSCCYCAGGSM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2b9fea9f92638016b7e43e7175dd47ed data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF870ORM;ENCODE_bigBed_id=ENCFF712EXQ;PMID=34755879;Motif_sequence=DSCCYCAGGSM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR234VCE] [Life stage: Adult] [TFBS]
DPF2 • GM12878 NGFTB5SDWO76MU • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB5SDWO76MU data_source Factorbook Download track Download number_of_intervals 8,992 bp_covered 161,856 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR509FWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 151,548 downloaded_date 07/10/2024 release_date 05/17/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_GGCACACAGTAGGTSCTC_sorted.bed.gz processed_file_md5 489827e3424e1b7904d57b09de48eb76 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_GGCACACAGTAGGTSCTC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_GGCACACAGTAGGTSCTC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF003ZLG_GGCACACAGTAGGTSCTC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF003ZLG_GGCACACAGTAGGTSCTC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6bb4e652caa5f4f72e97f627d67fc0e7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF003ZLG;ENCODE_bigBed_id=ENCFF681AJV;PMID=34755879;Motif_sequence=GGCACACAGTAGGTSCTC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR509FWH] [TFBS]
DPF2 • GM12878 NGFTB5XT3XKJ5A • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB5XT3XKJ5A data_source Factorbook Download track Download number_of_intervals 25,338 bp_covered 380,070 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR509FWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 391,783 downloaded_date 07/10/2024 release_date 05/17/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_TYTCASTTCCTCWTT_sorted.bed.gz processed_file_md5 3365f140a2aa2e7aa8e73d9e46676aff wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_TYTCASTTCCTCWTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_TYTCASTTCCTCWTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF003ZLG_TYTCASTTCCTCWTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF003ZLG_TYTCASTTCCTCWTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4fd3673cdbb3ed496e9372e7c97896e4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF003ZLG;ENCODE_bigBed_id=ENCFF681AJV;PMID=34755879;Motif_sequence=TYTCASTTCCTCWTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR509FWH] [TFBS]
DPF2 • K562 NGFTB6HQUP4VEQ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB6HQUP4VEQ data_source Factorbook Download track Download number_of_intervals 81,356 bp_covered 2,440,680 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,089,280 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_ACACACACACACACACACACACACACACAC_sorted.bed.gz processed_file_md5 724e78890ea436722035aeac3c4efa42 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_ACACACACACACACACACACACACACACAC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF542HJS_ACACACACACACACACACACACACACACAC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF542HJS_ACACACACACACACACACACACACACACAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF542HJS_ACACACACACACACACACACACACACACAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bf750171036194ec69fd7ff617efca90 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF542HJS;ENCODE_bigBed_id=ENCFF775HUO;PMID=34755879;Motif_sequence=ACACACACACACACACACACACACACACAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR715CCR] [Life stage: Adult] [TFBS]
DPF2 • GM12878 NGFTB6W6UVBIYX • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB6W6UVBIYX data_source Factorbook Download track Download number_of_intervals 7,568 bp_covered 166,496 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR509FWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 131,632 downloaded_date 07/10/2024 release_date 05/17/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_ATTGGYYVVNDBSSCYGYCMVT_sorted.bed.gz processed_file_md5 98dd77887f906439e4a8d828c5b7ae33 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_ATTGGYYVVNDBSSCYGYCMVT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_ATTGGYYVVNDBSSCYGYCMVT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF003ZLG_ATTGGYYVVNDBSSCYGYCMVT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF003ZLG_ATTGGYYVVNDBSSCYGYCMVT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 640ed9c6e1358a27277f69beed96b4bf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF003ZLG;ENCODE_bigBed_id=ENCFF681AJV;PMID=34755879;Motif_sequence=ATTGGYYVVNDBSSCYGYCMVT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR509FWH] [TFBS]
DPF2 • K562 NGFTB7E37WSDF2 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB7E37WSDF2 data_source Factorbook Download track Download number_of_intervals 8,646 bp_covered 95,106 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 110,009 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_BBCTTATCTSB_sorted.bed.gz processed_file_md5 ebacabcde5f64cfa10c314635ad960c3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_BBCTTATCTSB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_BBCTTATCTSB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF716PXH_BBCTTATCTSB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF716PXH_BBCTTATCTSB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 4421e05d20f14554544be1e63b7eb99d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF716PXH;ENCODE_bigBed_id=ENCFF739JDE;PMID=34755879;Motif_sequence=BBCTTATCTSB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR219BXP] [Life stage: Adult] [TFBS]
DPF2 • MCF-7 NGFTBGPMKBW4RX • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBGPMKBW4RX data_source Factorbook Download track Download number_of_intervals 6,777 bp_covered 67,770 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 84,772 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_TGTTTRCWTW_sorted.bed.gz processed_file_md5 c935b78a7bfbcecc94610a307709475b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_TGTTTRCWTW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_TGTTTRCWTW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF870ORM_TGTTTRCWTW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF870ORM_TGTTTRCWTW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 58fb7ff8e85f9adee3a54e3133fab55c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF870ORM;ENCODE_bigBed_id=ENCFF712EXQ;PMID=34755879;Motif_sequence=TGTTTRCWTW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR234VCE] [Life stage: Adult] [TFBS]
DPF2 • K562 NGFTBHUDLIN4AZ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBHUDLIN4AZ data_source Factorbook Download track Download number_of_intervals 12,866 bp_covered 141,526 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 134,987 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_KSTGASTCATB_sorted.bed.gz processed_file_md5 0395692f2cf871dc659b9faaa3b43e80 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_KSTGASTCATB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_KSTGASTCATB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF716PXH_KSTGASTCATB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF716PXH_KSTGASTCATB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fd2d22a9d15d8e9d4a417f1e032d6e15 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF716PXH;ENCODE_bigBed_id=ENCFF739JDE;PMID=34755879;Motif_sequence=KSTGASTCATB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR219BXP] [Life stage: Adult] [TFBS]
DPF2 • MCF-7 NGFTBN5AU23YS2 • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBN5AU23YS2 data_source Factorbook Download track Download number_of_intervals 9,727 bp_covered 77,816 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 96,668 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_TGAGTCAY_sorted.bed.gz processed_file_md5 c31158babc88473afe1f26c458350fba wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_TGAGTCAY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_TGAGTCAY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF870ORM_TGAGTCAY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF870ORM_TGAGTCAY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 32f5289ce6c3da8c1d793b157516b05f data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF870ORM;ENCODE_bigBed_id=ENCFF712EXQ;PMID=34755879;Motif_sequence=TGAGTCAY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR234VCE] [Life stage: Adult] [TFBS]
DPF2 • MCF-7 NGFTBS2JMJLT6I • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBS2JMJLT6I data_source Factorbook Download track Download number_of_intervals 9,534 bp_covered 162,078 output_type transcription factor binding sites all genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR234VCE biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 159,799 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_AACYDGHMAAACHGGTT_sorted.bed.gz processed_file_md5 4e569d2605d033cac66a7725a93e0edb wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_AACYDGHMAAACHGGTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF870ORM_AACYDGHMAAACHGGTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF870ORM_AACYDGHMAAACHGGTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF870ORM_AACYDGHMAAACHGGTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d875cd5786af6f04efc1baa7057daedf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7;Original_cell_type=MCF-7;Lab=Michael Snyder, Stanford;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF870ORM;ENCODE_bigBed_id=ENCFF712EXQ;PMID=34755879;Motif_sequence=AACYDGHMAAACHGGTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR234VCE] [Life stage: Adult] [TFBS]
DPF2 • GM12878 NGFTBSX4BPW7C2 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBSX4BPW7C2 data_source Factorbook Download track Download number_of_intervals 9,460 bp_covered 141,900 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR509FWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 143,676 downloaded_date 07/10/2024 release_date 05/17/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_TGASTCATWHCRRRA_sorted.bed.gz processed_file_md5 56d6f49060844d436a15f4bfce99dc5b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_TGASTCATWHCRRRA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF003ZLG_TGASTCATWHCRRRA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF003ZLG_TGASTCATWHCRRRA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF003ZLG_TGASTCATWHCRRRA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 515164724891defae8db6aef77e67746 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF003ZLG;ENCODE_bigBed_id=ENCFF681AJV;PMID=34755879;Motif_sequence=TGASTCATWHCRRRA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR509FWH] [TFBS]
DPF2 • K562 NGFTBULHDF7SSF • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBULHDF7SSF data_source Factorbook Download track Download number_of_intervals 4,246 bp_covered 80,674 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 69,506 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_TGAGBRCCTACTRTGTGCY_sorted.bed.gz processed_file_md5 c4853c3c9f9736438f011ff2e31a6dbe wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_TGAGBRCCTACTRTGTGCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_TGAGBRCCTACTRTGTGCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF716PXH_TGAGBRCCTACTRTGTGCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF716PXH_TGAGBRCCTACTRTGTGCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 0e354aabbe9afcae0e08857d9a80c0ba data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF716PXH;ENCODE_bigBed_id=ENCFF739JDE;PMID=34755879;Motif_sequence=TGAGBRCCTACTRTGTGCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR219BXP] [Life stage: Adult] [TFBS]
DPF2 • K562 NGFTBURF2HDSWQ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBURF2HDSWQ data_source Factorbook Download track Download number_of_intervals 29,251 bp_covered 877,530 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR715CCR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 343,501 downloaded_date 07/10/2024 release_date 04/22/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF542HJS_ACACACACACACACACACACACACACACAC_filtered.bed.gz processed_file_md5 f8dea67ec669d50ca574d77fa89cfeac wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF542HJS_ACACACACACACACACACACACACACACAC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF542HJS_ACACACACACACACACACACACACACACAC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF542HJS_ACACACACACACACACACACACACACACAC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF542HJS_ACACACACACACACACACACACACACACAC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bf750171036194ec69fd7ff617efca90 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF542HJS;ENCODE_bigBed_id=ENCFF775HUO;PMID=34755879;Motif_sequence=ACACACACACACACACACACACACACACAC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR715CCR] [Life stage: Adult] [TFBS]
DPF2 • K562 NGFTBX23RVCP2P • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBX23RVCP2P data_source Factorbook Download track Download number_of_intervals 7,067 bp_covered 141,340 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR219BXP biological_replicate 1, 3 technical_replicate 1_1, 3_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 124,016 downloaded_date 07/10/2024 release_date 11/14/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_YTATCWNHNCHNDVCAGMBK_sorted.bed.gz processed_file_md5 62f76cfe6ecb059f725142350b0200d3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_YTATCWNHNCHNDVCAGMBK_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF716PXH_YTATCWNHNCHNDVCAGMBK_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF716PXH_YTATCWNHNCHNDVCAGMBK.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF716PXH_YTATCWNHNCHNDVCAGMBK.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 7910e8b041dbd7e075d5ee2fd9782acf data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF716PXH;ENCODE_bigBed_id=ENCFF739JDE;PMID=34755879;Motif_sequence=YTATCWNHNCHNDVCAGMBK;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 3) Motif finding DPF2 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR219BXP] [Life stage: Adult] [TFBS]
DPF2 • GM12878 NGFTBXBDFYOISX • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBXBDFYOISX data_source Factorbook Download track Download number_of_intervals 138 bp_covered 2,484 output_type transcription factor binding sites significant genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR509FWH biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DPF2 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 1,804 downloaded_date 07/10/2024 release_date 05/17/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF003ZLG_GGCACACAGTAGGTSCTC_filtered.bed.gz processed_file_md5 7efbe213baef614f4c04affd44368d69 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF003ZLG_GGCACACAGTAGGTSCTC_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF003ZLG_GGCACACAGTAGGTSCTC_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF003ZLG_GGCACACAGTAGGTSCTC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF003ZLG_GGCACACAGTAGGTSCTC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 6bb4e652caa5f4f72e97f627d67fc0e7 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF003ZLG;ENCODE_bigBed_id=ENCFF681AJV;PMID=34755879;Motif_sequence=GGCACACAGTAGGTSCTC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding DPF2 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR509FWH] [TFBS]
DR1 • HepG2 NGENC3CHYALMZE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC3CHYALMZE data_source ENCODE Download track Download number_of_intervals 7,123 bp_covered 3,558,270 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR185AYQ biological_replicate 2 technical_replicate 2_1 antibody DR1 assay TF ChIP-seq file_format bed narrowPeak file_size 135,374 downloaded_date 05/15/2024 release_date 09/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF100RPO.bed.gz processed_file_md5 4d1211fdb27dd2214b60da5fad216d82 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF100RPO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF100RPO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF100RPO/@@download/ENCFF100RPO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF100RPO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c23d2d992c32fd503dedeb9997686d0d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170655;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2021-01-29,2020-06-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq DR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR185AYQ] [Life stage: Child] [TF ChIP-seq peaks]
DR1 • HepG2 NGENC3U7YZRD3Q • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC3U7YZRD3Q data_source ENCODE Download track Download number_of_intervals 11,384 bp_covered 5,656,040 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR185AYQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DR1 assay TF ChIP-seq file_format bed narrowPeak file_size 217,268 downloaded_date 05/15/2024 release_date 09/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF819QMC.bed.gz processed_file_md5 ac0e020a02df49885494c32d940c5e01 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF819QMC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF819QMC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF819QMC/@@download/ENCFF819QMC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF819QMC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 e025d7e8bb148bf66812ddc60ae334ab data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170655;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2021-01-29,2020-06-26;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq DR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR185AYQ] [Life stage: Child] [TF ChIP-seq peaks]
DR1 • HepG2 NGENCBT32Z2K6P • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCBT32Z2K6P data_source ENCODE Download track Download number_of_intervals 10,329 bp_covered 4,524,203 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR185AYQ biological_replicate 1 technical_replicate 1_1 antibody DR1 assay TF ChIP-seq file_format bed narrowPeak file_size 187,661 downloaded_date 05/15/2024 release_date 09/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF611GIA.bed.gz processed_file_md5 4ccc5ccbd8231e3d062023c24a2e5434 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF611GIA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF611GIA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF611GIA/@@download/ENCFF611GIA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF611GIA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 d587aa7f7a821fbcfd675a4026162293 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170655;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2021-01-29,2020-06-26;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq DR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR185AYQ] [Life stage: Child] [TF ChIP-seq peaks]
DR1 • HepG2 NGENCFMPUNFRAP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCFMPUNFRAP data_source ENCODE Download track Download number_of_intervals 12,469 bp_covered 6,207,413 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR185AYQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody DR1 assay TF ChIP-seq file_format bed narrowPeak file_size 237,417 downloaded_date 05/15/2024 release_date 09/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF818WYO.bed.gz processed_file_md5 3b00c0cba08a88db0f8243d05c3e5912 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF818WYO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF818WYO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF818WYO/@@download/ENCFF818WYO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF818WYO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 664b97aafeb291965667bdedb9390e6a data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170655;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2021-01-29,2020-06-26;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=epithelial cell,cancer cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1, 2) TF ChIP-seq DR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR185AYQ] [Life stage: Child] [TF ChIP-seq peaks]
DRAP1 • HepG2 NGENC3LONHYK6V • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENC3LONHYK6V data_source ENCODE Download track Download number_of_intervals 21,332 bp_covered 7,861,891 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR765MKZ biological_replicate 2 technical_replicate 2_1 antibody DRAP1 assay TF ChIP-seq file_format bed narrowPeak file_size 370,022 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF597VAO.bed.gz processed_file_md5 6fb06f19ca2c3739de7b49e165e2e3ec wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF597VAO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF597VAO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF597VAO/@@download/ENCFF597VAO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF597VAO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 adca4d89dd5c4dcb6b920354698504c7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DRAP1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=child 15 years;Reference=PMID:32728244;External_resources=FactorBook:ENCSR765MKZ,GEO:GSE96365;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-11-08,2016-10-11;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq DRAP1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR765MKZ] [Life stage: Child] [TF ChIP-seq peaks]