E2F4 • HepG2 NGENCSBENY2M75 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCSBENY2M75 data_source ENCODE Download track Download number_of_intervals 16,364 bp_covered 7,264,231 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR924LSO biological_replicate 2 technical_replicate 2_1 antibody E2F4 assay TF ChIP-seq file_format bed narrowPeak file_size 311,658 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF096CBU.bed.gz processed_file_md5 13d74b4c00692bbddf98e9984147ed33 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF096CBU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF096CBU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF096CBU/@@download/ENCFF096CBU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF096CBU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1cb577f5a7365259e54f834c7561f05f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170651;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-08,2020-06-26;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) TF ChIP-seq E2F4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR924LSO] [Life stage: Child] [TF ChIP-seq peaks]
E2F4 • K562 NGENCSVZMP2XQX • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCSVZMP2XQX data_source ENCODE Download track Download number_of_intervals 3,026 bp_covered 881,902 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR368GJN biological_replicate 1 technical_replicate 1_1 antibody E2F4 assay TF ChIP-seq file_format bed narrowPeak file_size 57,589 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF078RWH.bed.gz processed_file_md5 b08d334b8fa7a47b7f4e0c063ae32a19 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF078RWH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF078RWH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF078RWH/@@download/ENCFF078RWH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF078RWH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b388f20f3aa81599d03263f7ab085a1c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE231060;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq E2F4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR368GJN] [Life stage: Adult] [TF ChIP-seq peaks]
E2F4 • WTC11 NGENCTQTEFZM5O • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCTQTEFZM5O data_source ENCODE Download track Download number_of_intervals 4,185 bp_covered 1,865,159 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR264OKN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay TF ChIP-seq file_format bed narrowPeak file_size 82,438 downloaded_date 05/15/2024 release_date 09/03/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF630TVS.bed.gz processed_file_md5 2b1ae758e27df01c13d79fb5e6d29b40 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF630TVS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF630TVS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF630TVS/@@download/ENCFF630TVS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF630TVS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4a42465061def9aff8efceb7aa23deb8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230931;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-09-30,2022-07-25;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq E2F4 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR264OKN] [Life stage: Adult] [TF ChIP-seq peaks]
E2F4 • MCF 10A NGENCVK255FPEG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF 10A TF Show metadata Download track Track metadata identifier NGENCVK255FPEG data_source ENCODE Download track Download number_of_intervals 5,429 bp_covered 1,209,873 output_type IDR thresholded peaks genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOR biological_replicate 2 technical_replicate 2_1 antibody E2F4 assay TF ChIP-seq file_format bed narrowPeak file_size 91,157 downloaded_date 07/10/2025 release_date 12/27/2020 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF340JLC.bed.gz processed_file_md5 63604acc4d184e0d5650e11775f8603b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF340JLC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF340JLC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF340JLC/@@download/ENCFF340JLC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF340JLC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 16f15c56517952b31341d834a0a669d8 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF 10A treated with 1 _M afimoxifene for 36 hours;Lab=Kevin Struhl, HMS;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=adult 36 years;Reference=NR;External_resources=GEO:GSM935400,UCSC-ENCODE-hg19:wgEncodeEH002835,FactorBook:ENCSR000DOR;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF 10A;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF 10A (repl. 2) TF ChIP-seq E2F4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DOR] [Life stage: Adult] [TF ChIP-seq peaks]
E2F4 • WTC11 NGENCXKEG5RJ6Y • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCXKEG5RJ6Y data_source ENCODE Download track Download number_of_intervals 4,524 bp_covered 2,017,709 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR264OKN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay TF ChIP-seq file_format bed narrowPeak file_size 89,116 downloaded_date 05/15/2024 release_date 09/03/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF574OKJ.bed.gz processed_file_md5 b772bd6e43264612cfd575e7d5747bf1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF574OKJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF574OKJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF574OKJ/@@download/ENCFF574OKJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF574OKJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7deecac0011096106cdd9fa741587cbd data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230931;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-09-30,2022-07-25;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq E2F4 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR264OKN] [Life stage: Adult] [TF ChIP-seq peaks]
E2F4 • GM12878 NGENCZ2DBYYODU • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCZ2DBYYODU data_source ENCODE Download track Download number_of_intervals 3,949 bp_covered 1,161,700 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay TF ChIP-seq file_format bed narrowPeak file_size 78,145 downloaded_date 06/12/2022 release_date 01/08/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF468BER.bed.gz processed_file_md5 6e18311b93d50b28ab67e6948e742aba wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF468BER.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF468BER.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF468BER/@@download/ENCFF468BER.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF468BER.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 94d61320b37a76c3101da2d59c22d93f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1,RegulomeDB_1_0,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_0;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH002867,FactorBook:ENCSR000DYY,GEO:GSM935330;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2012-05-14,2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq E2F4 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000DYY] [Life stage: Adult] [TF ChIP-seq peaks]
E2F4 • HeLa-S3 NGFTB2NEB6TIYL • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB2NEB6TIYL data_source Factorbook Download track Download number_of_intervals 4,856 bp_covered 72,840 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EVL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 73,993 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_GCGCATGCGCASTGS_sorted.bed.gz processed_file_md5 92a5449671f25d64d63a944385c25baf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_GCGCATGCGCASTGS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_GCGCATGCGCASTGS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF718JTU_GCGCATGCGCASTGS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF718JTU_GCGCATGCGCASTGS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9a32587394b900dbe9712f332606b3c8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Peggy Farnham, USC;System=reproductive system;ENCODE_BED_id=ENCFF718JTU;ENCODE_bigBed_id=ENCFF669WYW;PMID=34755879;Motif_sequence=GCGCATGCGCASTGS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EVL] [Life stage: Adult] [TFBS]
E2F4 • MCF 10A NGFTB3646B4N5S • Factorbook34755879 Motif finding MCF 10A TFBS Show metadata Download track Track metadata identifier NGFTB3646B4N5S data_source Factorbook Download track Download number_of_intervals 16,921 bp_covered 186,131 output_type transcription factor binding sites all genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 241,822 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_GCCCCGCCCCY_sorted.bed.gz processed_file_md5 d02efa5ad213a2ff947c5f5fcf63d28b wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_GCCCCGCCCCY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_GCCCCGCCCCY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF580EMK_GCCCCGCCCCY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF580EMK_GCCCCGCCCCY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2b5a49cc8e77e2b5fc54e8298b919036 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF 10A treated with 1 _M afimoxifene for 36 hours;Original_cell_type=MCF 10A;Lab=Kevin Struhl, HMS;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF580EMK;ENCODE_bigBed_id=ENCFF075UGR;PMID=34755879;Motif_sequence=GCCCCGCCCCY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF 10A (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOR] [Life stage: Adult] [TFBS]
E2F4 • HeLa-S3 NGFTB4WTU3HIRD • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTB4WTU3HIRD data_source Factorbook Download track Download number_of_intervals 1,181 bp_covered 17,715 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EVL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 19,868 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_YBSYGATTGGYYGVB_sorted.bed.gz processed_file_md5 01eb8bf32806d8fafebe885b10a21be1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_YBSYGATTGGYYGVB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_YBSYGATTGGYYGVB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF718JTU_YBSYGATTGGYYGVB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF718JTU_YBSYGATTGGYYGVB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 c84619ca26c3e0d9a7d3fb96538c783d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Peggy Farnham, USC;System=reproductive system;ENCODE_BED_id=ENCFF718JTU;ENCODE_bigBed_id=ENCFF669WYW;PMID=34755879;Motif_sequence=YBSYGATTGGYYGVB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EVL] [Life stage: Adult] [TFBS]
E2F4 • K562 NGFTBBAVEA2TDL • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBBAVEA2TDL data_source Factorbook Download track Download number_of_intervals 13,560 bp_covered 149,160 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 189,980 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_GGGGGCGGGGC_sorted.bed.gz processed_file_md5 814a96f1a03ef27814e32ca8b51dbcfd wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_GGGGGCGGGGC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_GGGGGCGGGGC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF064CWA_GGGGGCGGGGC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF064CWA_GGGGGCGGGGC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8f42a932bde3dd2c4be4ba9e7abc7285 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Peggy Farnham, USC;System=immune system;ENCODE_BED_id=ENCFF064CWA;ENCODE_bigBed_id=ENCFF950BEB;PMID=34755879;Motif_sequence=GGGGGCGGGGC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EWL] [Life stage: Adult] [TFBS]
E2F4 • K562 NGFTBEF4KATUEK • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBEF4KATUEK data_source Factorbook Download track Download number_of_intervals 13,287 bp_covered 239,166 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 238,491 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_NBBBVVNYTTCCCGCSVN_sorted.bed.gz processed_file_md5 e2a81d5ee27b98b403bcf0e15dbe596c wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_NBBBVVNYTTCCCGCSVN_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_NBBBVVNYTTCCCGCSVN_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF064CWA_NBBBVVNYTTCCCGCSVN.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF064CWA_NBBBVVNYTTCCCGCSVN.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 b29144ee72f6a363280e5896075efd52 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Peggy Farnham, USC;System=immune system;ENCODE_BED_id=ENCFF064CWA;ENCODE_bigBed_id=ENCFF950BEB;PMID=34755879;Motif_sequence=NBBBVVNYTTCCCGCSVN;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EWL] [Life stage: Adult] [TFBS]
E2F4 • GM12878 NGFTBEUDKHOZ3Q • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBEUDKHOZ3Q data_source Factorbook Download track Download number_of_intervals 3,534 bp_covered 38,874 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 49,461 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_TTTCCCGCCVM_sorted.bed.gz processed_file_md5 129cd4304157b34d99e2973c3f5e35f5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_TTTCCCGCCVM_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_TTTCCCGCCVM_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF744QAC_TTTCCCGCCVM.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF744QAC_TTTCCCGCCVM.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cd47ed28e2c5c17360ffad32a7ff7761 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF744QAC;ENCODE_bigBed_id=ENCFF509WLQ;PMID=34755879;Motif_sequence=TTTCCCGCCVM;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYY] [TFBS]
E2F4 • HeLa-S3 NGFTBJRPSDIVOG • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBJRPSDIVOG data_source Factorbook Download track Download number_of_intervals 321 bp_covered 2,247 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EVL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,372 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_TTTGAAH_sorted.bed.gz processed_file_md5 b17be188ad86c9dd2e18ade913071176 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_TTTGAAH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_TTTGAAH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF718JTU_TTTGAAH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF718JTU_TTTGAAH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 9681bc77e06696f8852f9cc7fd988cb9 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Peggy Farnham, USC;System=reproductive system;ENCODE_BED_id=ENCFF718JTU;ENCODE_bigBed_id=ENCFF669WYW;PMID=34755879;Motif_sequence=TTTGAAH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EVL] [Life stage: Adult] [TFBS]
E2F4 • GM12878 NGFTBKHMTHX7RC • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBKHMTHX7RC data_source Factorbook Download track Download number_of_intervals 1,648 bp_covered 19,776 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 25,172 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_RRCCAATCRGMR_sorted.bed.gz processed_file_md5 b4122bf6486f0f6ddcfc5bfd9f1b637e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_RRCCAATCRGMR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_RRCCAATCRGMR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF744QAC_RRCCAATCRGMR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF744QAC_RRCCAATCRGMR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 cf4d27e7d24a281f976c465725a9d918 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF744QAC;ENCODE_bigBed_id=ENCFF509WLQ;PMID=34755879;Motif_sequence=RRCCAATCRGMR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYY] [TFBS]
E2F4 • MCF-7 NGFTBKXOFJDHEV • Factorbook34755879 Motif finding MCF-7 TFBS Show metadata Download track Track metadata identifier NGFTBKXOFJDHEV data_source Factorbook Download track Download number_of_intervals 2 bp_covered 42 output_type transcription factor binding sites significant genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR505NMN biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 393 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF090CEP_DTTYAAAWYTCSCGCSSBSSS_filtered.bed.gz processed_file_md5 e969549eb3cf8b72d690456cc82739b4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF090CEP_DTTYAAAWYTCSCGCSSBSSS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF090CEP_DTTYAAAWYTCSCGCSSBSSS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF090CEP_DTTYAAAWYTCSCGCSSBSSS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF090CEP_DTTYAAAWYTCSCGCSSBSSS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f84d1ab630ac29cf619553b9cf416121 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF-7 stably expressing E2F4;Original_cell_type=MCF-7;Lab=Kevin White, UChicago;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF090CEP;ENCODE_bigBed_id=ENCFF249IZG;PMID=34755879;Motif_sequence=DTTYAAAWYTCSCGCSSBSSS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF-7 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR505NMN] [Life stage: Adult] [TFBS]
E2F4 • HeLa-S3 NGFTBLXSF5HJQ2 • Factorbook34755879 Motif finding HeLa-S3 TFBS Show metadata Download track Track metadata identifier NGFTBLXSF5HJQ2 data_source Factorbook Download track Download number_of_intervals 7,025 bp_covered 140,500 output_type transcription factor binding sites all genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EVL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 126,977 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_NNYYBVRWYTTCCCGCCMNS_sorted.bed.gz processed_file_md5 9ae0f0d0e12cd0aed3807a095ef03916 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_NNYYBVRWYTTCCCGCCMNS_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF718JTU_NNYYBVRWYTTCCCGCCMNS_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF718JTU_NNYYBVRWYTTCCCGCCMNS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF718JTU_NNYYBVRWYTTCCCGCCMNS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e6ccb73e97a42eb4a3b459fb60749709 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HeLa-S3;Original_cell_type=HeLa-S3;Lab=Peggy Farnham, USC;System=reproductive system;ENCODE_BED_id=ENCFF718JTU;ENCODE_bigBed_id=ENCFF669WYW;PMID=34755879;Motif_sequence=NNYYBVRWYTTCCCGCCMNS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook HeLa-S3 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EVL] [Life stage: Adult] [TFBS]
E2F4 • K562 NGFTBMCNBGZHSO • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBMCNBGZHSO data_source Factorbook Download track Download number_of_intervals 263 bp_covered 2,104 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,162 downloaded_date 07/10/2024 release_date 10/29/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_RTTTGAAW_sorted.bed.gz processed_file_md5 cf5f80b625c67f2314be8920d2350433 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_RTTTGAAW_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF064CWA_RTTTGAAW_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF064CWA_RTTTGAAW.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF064CWA_RTTTGAAW.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2ae0de288fe78eb679b330ff0a146369 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Peggy Farnham, USC;System=immune system;ENCODE_BED_id=ENCFF064CWA;ENCODE_bigBed_id=ENCFF950BEB;PMID=34755879;Motif_sequence=RTTTGAAW;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000EWL] [Life stage: Adult] [TFBS]
E2F4 • MCF 10A NGFTBNBB7FQSKY • Factorbook34755879 Motif finding MCF 10A TFBS Show metadata Download track Track metadata identifier NGFTBNBB7FQSKY data_source Factorbook Download track Download number_of_intervals 5,869 bp_covered 88,035 output_type transcription factor binding sites all genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 99,919 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_TTYVAATTTCCCGCC_sorted.bed.gz processed_file_md5 3569970e0a0c21d5b7c507843cb45475 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_TTYVAATTTCCCGCC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_TTYVAATTTCCCGCC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF580EMK_TTYVAATTTCCCGCC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF580EMK_TTYVAATTTCCCGCC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 fc84a091b20c18cba8b7156043d2e7b8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF 10A treated with 1 _M afimoxifene for 36 hours;Original_cell_type=MCF 10A;Lab=Kevin Struhl, HMS;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF580EMK;ENCODE_bigBed_id=ENCFF075UGR;PMID=34755879;Motif_sequence=TTYVAATTTCCCGCC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF 10A (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOR] [Life stage: Adult] [TFBS]
E2F4 • GM12878 NGFTBQNZWVB6IO • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBQNZWVB6IO data_source Factorbook Download track Download number_of_intervals 1,134 bp_covered 18,144 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000DYY biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 21,783 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_SGCGSGARDTTYRAAH_sorted.bed.gz processed_file_md5 0925524f2f019d4cbb6b34b2e145056e wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_SGCGSGARDTTYRAAH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF744QAC_SGCGSGARDTTYRAAH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF744QAC_SGCGSGARDTTYRAAH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF744QAC_SGCGSGARDTTYRAAH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a41cc24fb956531dbf007b0e40286902 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF744QAC;ENCODE_bigBed_id=ENCFF509WLQ;PMID=34755879;Motif_sequence=SGCGSGARDTTYRAAH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DYY] [TFBS]
E2F4 • MCF 10A NGFTBR5IRL5W23 • Factorbook34755879 Motif finding MCF 10A TFBS Show metadata Download track Track metadata identifier NGFTBR5IRL5W23 data_source Factorbook Download track Download number_of_intervals 1,433 bp_covered 10,031 output_type transcription factor binding sites all genome_build hg38 cell_type MCF 10A biosample_type Cell line biosample_term_id EFO:0001200 tissue_category Breast encode_experiment_id ENCSR000DOR biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F4 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 14,149 downloaded_date 07/10/2024 release_date 05/14/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_WTTCAAA_sorted.bed.gz processed_file_md5 2fba3d63ccc8e8d275528cd899c88067 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_WTTCAAA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF580EMK_WTTCAAA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF580EMK_WTTCAAA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF580EMK_WTTCAAA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a333e183bb21382a81be783ddcfd9c1d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens MCF 10A treated with 1 _M afimoxifene for 36 hours;Original_cell_type=MCF 10A;Lab=Kevin Struhl, HMS;System=exocrine system,integumental system;ENCODE_BED_id=ENCFF580EMK;ENCODE_bigBed_id=ENCFF075UGR;PMID=34755879;Motif_sequence=WTTCAAA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001200;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name Factorbook MCF 10A (repl. 1, 2) Motif finding E2F4 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000DOR] [Life stage: Adult] [TFBS]