E2F5 • K562 NGENCVUOJQGSGT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCVUOJQGSGT data_source ENCODE Download track Download number_of_intervals 1,656 bp_covered 595,384 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR744GHR biological_replicate 1 technical_replicate 1_1 antibody E2F5 assay TF ChIP-seq file_format bed narrowPeak file_size 33,106 downloaded_date 05/15/2024 release_date 07/23/2022 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF462EVY.bed.gz processed_file_md5 ce7fe6330ec90a96e4e36a13d5c168de wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF462EVY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF462EVY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF462EVY/@@download/ENCFF462EVY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF462EVY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b5b9f5e268706bad813c774ab2b9893e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE230897;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2022-08-15,2022-07-25;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq E2F5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR744GHR] [Life stage: Adult] [TF ChIP-seq peaks]
E2F5 • HepG2 NGENCY5V4WS2KL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCY5V4WS2KL data_source ENCODE Download track Download number_of_intervals 4,741 bp_covered 1,454,385 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR486JYI biological_replicate 1 technical_replicate 1_1 antibody E2F5 assay TF ChIP-seq file_format bed narrowPeak file_size 82,142 downloaded_date 06/12/2022 release_date 07/01/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF603CSH.bed.gz processed_file_md5 a1f8194df83b1ac40d58763685527b75 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF603CSH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF603CSH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF603CSH/@@download/ENCFF603CSH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF603CSH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5b5acdbecdb47ab18fe5e9e811968cb3 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE170241;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-07-09,2016-10-11;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.4.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq E2F5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR486JYI] [Life stage: Child] [TF ChIP-seq peaks]
E2F5 • K562 NGENCYRK4AQOEI • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCYRK4AQOEI data_source ENCODE Download track Download number_of_intervals 13,180 bp_covered 8,748,135 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 2 technical_replicate 2_1 antibody E2F5 assay TF ChIP-seq file_format bed narrowPeak file_size 256,213 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF053LQM.bed.gz processed_file_md5 fff4699e66b90fce90e1f3fc52ad0ec0 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF053LQM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF053LQM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF053LQM/@@download/ENCFF053LQM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF053LQM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f26b4dd550595356719d8c2ccebeab4c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Lab=Kevin White, UChicago;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR709DRM,GEO:GSE105824;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-06-13,2016-05-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq E2F5 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR709DRM] [Life stage: Adult] [TF ChIP-seq peaks]
E2F5 • K562 NGFTB4PSRSJFFR • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB4PSRSJFFR data_source Factorbook Download track Download number_of_intervals 600 bp_covered 12,000 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,140 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT_filtered.bed.gz processed_file_md5 0c05c1993c57f7d9e0b7e3fcea85b6d0 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 262bebdd2e582040de5ae540363fc379 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=AAGATGGAGTYRCTCTGGTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F5 • K562 NGFTB7LFEJRHLR • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB7LFEJRHLR data_source Factorbook Download track Download number_of_intervals 35 bp_covered 735 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 890 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG_filtered.bed.gz processed_file_md5 33dd0c52bcf5911be0e4f21612880bc9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3a9cfa94d2d28b01e535a7e381236068 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=YVNHWYTGTCAGAGGCRTTTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F5 • K562 NGFTBB3IJ6RMZZ • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBB3IJ6RMZZ data_source Factorbook Download track Download number_of_intervals 4,126 bp_covered 86,646 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 74,081 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG_sorted.bed.gz processed_file_md5 8d1cbd9ccd80154055c621e6160615e1 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_YVNHWYTGTCAGAGGCRTTTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3a9cfa94d2d28b01e535a7e381236068 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=YVNHWYTGTCAGAGGCRTTTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F5 • K562 NGFTBJ3QZOHADH • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBJ3QZOHADH data_source Factorbook Download track Download number_of_intervals 441 bp_covered 9,261 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 5,741 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG_filtered.bed.gz processed_file_md5 77333d3373d4f0b99da0927cc9a67e46 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 29957a02d59eee52fc99a7037e04dfbb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=TCTCAGCCTYATTTTACCCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F5 • K562 NGFTBJ3RFZ74UE • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBJ3RFZ74UE data_source Factorbook Download track Download number_of_intervals 7,054 bp_covered 148,134 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 121,031 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG_sorted.bed.gz processed_file_md5 66c3d1088ae3a3641fcbf428c3266852 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_TCTCAGCCTYATTTTACCCAG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 29957a02d59eee52fc99a7037e04dfbb data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=TCTCAGCCTYATTTTACCCAG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F5 • K562 NGFTBQUIVBRCS6 • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBQUIVBRCS6 data_source Factorbook Download track Download number_of_intervals 8,845 bp_covered 256,505 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 180,979 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB_sorted.bed.gz processed_file_md5 cc3143d31802481f03216362c16b9812 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8cf4ccb5a496c296689ba44f864616ea data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=SCGCGVDGCMTKCTGGGARTTGTAGTYCB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F5 • K562 NGFTBRHVSXWMEM • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRHVSXWMEM data_source Factorbook Download track Download number_of_intervals 4,912 bp_covered 98,240 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 82,088 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT_sorted.bed.gz processed_file_md5 19812aa5265c435694b06f93ba0db089 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_AAGATGGAGTYRCTCTGGTT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 262bebdd2e582040de5ae540363fc379 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=AAGATGGAGTYRCTCTGGTT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F5 • K562 NGFTBZ5O3H527J • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBZ5O3H527J data_source Factorbook Download track Download number_of_intervals 916 bp_covered 26,564 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR709DRM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F5 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 17,527 downloaded_date 07/10/2024 release_date 06/13/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB_filtered.bed.gz processed_file_md5 65a0b61891d4a3d59cc794aea5b3ccd5 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF871CWZ_SCGCGVDGCMTKCTGGGARTTGTAGTYCB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8cf4ccb5a496c296689ba44f864616ea data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5;Original_cell_type=K562;Lab=Kevin White, UChicago;System=immune system;ENCODE_BED_id=ENCFF871CWZ;ENCODE_bigBed_id=ENCFF643TVI;PMID=34755879;Motif_sequence=SCGCGVDGCMTKCTGGGARTTGTAGTYCB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F5 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR709DRM] [Life stage: Adult] [TFBS]
E2F6 • HeLa-S3 NGENC2ZH5FP5PP • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENC2ZH5FP5PP data_source ENCODE Download track Download number_of_intervals 5,618 bp_covered 2,684,426 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EVK biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 107,809 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF920PKE.bed.gz processed_file_md5 770ca9c3083193f1639c226a07704581 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF920PKE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF920PKE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF920PKE/@@download/ENCFF920PKE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF920PKE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 81bd50273e4adfe11443584edfbd50e0 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EVK,UCSC-ENCODE-hg19:wgEncodeEH000692,GEO:GSM935476;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 1, 2) TF ChIP-seq E2F6 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EVK] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • A549 NGENC3SPUXEETV • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENC3SPUXEETV data_source ENCODE Download track Download number_of_intervals 16,070 bp_covered 7,039,978 output_type conservative IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BTC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 311,445 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF587YYO.bed.gz processed_file_md5 5a84857a66afc525dfc8404e33434df7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF587YYO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF587YYO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF587YYO/@@download/ENCFF587YYO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF587YYO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6d7f0dc9f2b2c4698c94f1d7db5d61df data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM1010766,FactorBook:ENCSR000BTC,UCSC-ENCODE-hg19:wgEncodeEH003244;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 1, 2) TF ChIP-seq E2F6 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTC] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • K562 NGENC4SKOF7BYN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENC4SKOF7BYN data_source ENCODE Download track Download number_of_intervals 16,349 bp_covered 5,794,858 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 283,965 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF163WMT.bed.gz processed_file_md5 684094571b8bf382c761c027d9e6a386 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF163WMT.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF163WMT.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF163WMT/@@download/ENCFF163WMT.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF163WMT.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f41b12a6f0de896117ede47bc21ec753 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EWJ,UCSC-ENCODE-hg19:wgEncodeEH000676,GEO:GSM935597;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29,2011-10-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq E2F6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EWJ] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • K562 NGENCBFUCP6ZT6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCBFUCP6ZT6 data_source ENCODE Download track Download number_of_intervals 6,366 bp_covered 1,736,496 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWJ biological_replicate 1 technical_replicate 1_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 111,972 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF763ZYG.bed.gz processed_file_md5 01b84a8be2dc7f02ba4fdcc564f0b29a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF763ZYG.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF763ZYG.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF763ZYG/@@download/ENCFF763ZYG.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF763ZYG.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a1656d691bd4d1c4104bfc296248fb6e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EWJ,UCSC-ENCODE-hg19:wgEncodeEH000676,GEO:GSM935597;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29,2011-10-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq E2F6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EWJ] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • A549 NGENCBPGQBCBB4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq A549 TF Show metadata Download track Track metadata identifier NGENCBPGQBCBB4 data_source ENCODE Download track Download number_of_intervals 7,262 bp_covered 2,386,069 output_type IDR thresholded peaks genome_build hg38 cell_type A549 biosample_type Cell line biosample_term_id EFO:0001086 tissue_category Lung encode_experiment_id ENCSR000BTC biological_replicate 2 technical_replicate 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 131,912 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF530KBS.bed.gz processed_file_md5 c1a651a178c5b4163f22117c881558c8 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF530KBS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF530KBS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF530KBS/@@download/ENCFF530KBS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF530KBS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 32d3da0ea85fefed0ee53e73c2080831 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens A549;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 58 years;Reference=NR;External_resources=GEO:GSM1010766,FactorBook:ENCSR000BTC,UCSC-ENCODE-hg19:wgEncodeEH003244;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=A549;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=respiratory system;ENCODE_biosample_term_synonyms=A-549,A549 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001086;is_hg38_lifted=no system_category Respiratory life_stage Adult track_name ENCODE A549 (repl. 2) TF ChIP-seq E2F6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BTC] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • K562 NGENCD5U7Q52Q4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCD5U7Q52Q4 data_source ENCODE Download track Download number_of_intervals 33,734 bp_covered 9,848,862 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BLI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 602,067 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF136LTS.bed.gz processed_file_md5 c1dc0994ef46d2c0858f4d2101811b22 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF136LTS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF136LTS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF136LTS/@@download/ENCFF136LTS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF136LTS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 414e3f5c23ee2e5e5fd7b3342226262e data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BLI,UCSC-ENCODE-hg19:wgEncodeEH001598,GEO:GSM803469;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq E2F6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BLI] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • K562 NGENCHEXF5NF4F • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCHEXF5NF4F data_source ENCODE Download track Download number_of_intervals 14,329 bp_covered 5,020,226 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000EWJ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 254,265 downloaded_date 06/12/2022 release_date 12/26/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF319SST.bed.gz processed_file_md5 51e5273674ec436c15c0c9ac20d0b7b4 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF319SST.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF319SST.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF319SST/@@download/ENCFF319SST.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF319SST.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ff2c0af0ad837653eaa955fffa51d788 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EWJ,UCSC-ENCODE-hg19:wgEncodeEH000676,GEO:GSM935597;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29,2011-10-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq E2F6 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EWJ] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • HeLa-S3 NGENCIBPXFZSRL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HeLa-S3 TF Show metadata Download track Track metadata identifier NGENCIBPXFZSRL data_source ENCODE Download track Download number_of_intervals 3,366 bp_covered 1,739,199 output_type IDR thresholded peaks genome_build hg38 cell_type HeLa-S3 biosample_type Cell line biosample_term_id EFO:0002791 tissue_category Female Reproductive encode_experiment_id ENCSR000EVK biological_replicate 2 technical_replicate 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 61,596 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF870AVE.bed.gz processed_file_md5 013206775b1417629e410998ea85b183 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF870AVE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF870AVE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF870AVE/@@download/ENCFF870AVE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF870AVE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 25dbb5074fb2c7da5585365afa0eef61 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HeLa-S3;Lab=Peggy Farnham, USC;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 31 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000EVK,UCSC-ENCODE-hg19:wgEncodeEH000692,GEO:GSM935476;Project=ENCODE;Award=U54HG004558;Experiment_date_released=2011-10-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HeLa-S3;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002791;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE HeLa-S3 (repl. 2) TF ChIP-seq E2F6 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000EVK] [Life stage: Adult] [TF ChIP-seq peaks]
E2F6 • H1-hESC NGENCITMTA2N4E • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCITMTA2N4E data_source ENCODE Download track Download number_of_intervals 28,843 bp_covered 11,357,897 output_type conservative IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BSI biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F6 assay TF ChIP-seq file_format bed narrowPeak file_size 510,519 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF549FGW.bed.gz processed_file_md5 ccff0513979d70fdc9de887ed19cf837 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF549FGW.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF549FGW.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF549FGW/@@download/ENCFF549FGW.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF549FGW.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0015e2fd5cfd36092ec84daab2f4079f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM1010899,FactorBook:ENCSR000BSI,UCSC-ENCODE-hg19:wgEncodeEH003224;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10,2012-02-29;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq E2F6 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BSI] [Life stage: Embryonic] [TF ChIP-seq peaks]