BCCIP • HepG2 NGENCJDFOH4IAG • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCJDFOH4IAG data_source ENCODE Download track Download number_of_intervals 3,627 bp_covered 211,922 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR485QCG biological_replicate 1 technical_replicate 1_1 antibody BCCIP assay eCLIP file_format bed narrowPeak file_size 64,008 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF887NCX.bed.gz processed_file_md5 007fc159063a2240a2803fa49e0b6e5d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF887NCX.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF887NCX.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF887NCX/@@download/ENCFF887NCX.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF887NCX.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b0aa5be1284843ae007b96d11de46dc8 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:BCCIP,GEO:GSE91804;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=230_01.basedon_230_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) eCLIP BCCIP peaks (narrowPeak) [Experiment: ENCSR485QCG] [Life stage: Child] [RNA binding]
BCCIP • HepG2 NGENCVQUXTRY43 • ENCODE22955616 | 41168159 | 31713622 eCLIP HepG2 RNA binding Show metadata Download track Track metadata identifier NGENCVQUXTRY43 data_source ENCODE Download track Download number_of_intervals 2,112 bp_covered 125,253 output_type peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR485QCG biological_replicate 2 technical_replicate 2_1 antibody BCCIP assay eCLIP file_format bed narrowPeak file_size 40,605 downloaded_date 06/04/2018 release_date 12/02/2016 date_added_to_filer 08/22/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF707GVV.bed.gz processed_file_md5 751ffcc8b4d65c8e95d737b4a2b76bf1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF707GVV.bed.gz -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ENCFF707GVV.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/eCLIP/narrowpeak/hg38/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF707GVV/@@download/ENCFF707GVV.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF707GVV.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 220a55c221b224061694a2a31c8bfc95 data_category RNA binding Genomic feature type eCLIP peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2;Lab=Gene Yeo, UCSD;ENCODE_internal_tags=ENCORE,ENCYCLOPEDIAv2;Life_stage_age=child 15 years;Reference=PMID:32252787;External_resources=RBPImage:BCCIP,GEO:GSE91804;Project=ENCODE;Award=U54HG007005;Experiment_date_released=2015-07-15;Submitted_track_name=230_02.basedon_230_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,digestive system,endocrine system;ENCODE_biosample_term_synonyms=HepG2 cell,Hep-G2;Analysis_title=Lab custom GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no;narrowPeak_filter=pValueLog10 system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 2) eCLIP BCCIP peaks (narrowPeak) [Experiment: ENCSR485QCG] [Life stage: Child] [RNA binding]
BCL11A • GM12878 NGENC2AKBXTHMR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENC2AKBXTHMR data_source ENCODE Download track Download number_of_intervals 12,213 bp_covered 3,192,608 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 2 technical_replicate 2_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 203,372 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF540LNB.bed.gz processed_file_md5 bf5902394b5cabe516276bbd907718ae wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF540LNB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF540LNB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF540LNB/@@download/ENCFF540LNB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF540LNB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 78ac9a0c95793d92349d5beae2df8f60 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001486,GEO:GSM803388,FactorBook:ENCSR000BHA;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHA] [Life stage: Adult] [TF ChIP-seq peaks]
BCL11A • HEK293 NGENCA3QWVOVLA • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCA3QWVOVLA data_source ENCODE Download track Download number_of_intervals 11,282 bp_covered 3,892,844 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 222,672 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF294OHB.bed.gz processed_file_md5 f1fe2de5315c5d12a14de5740f670d28 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF294OHB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF294OHB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF294OHB/@@download/ENCFF294OHB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF294OHB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c67712a63e388267a1084697d73964a2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR021DJC,GEO:GSE91420;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-25,2016-10-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR021DJC] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11A • H1-hESC NGENCBFJSYSOXS • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCBFJSYSOXS data_source ENCODE Download track Download number_of_intervals 894 bp_covered 157,344 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BMJ biological_replicate 2 technical_replicate 2_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 15,754 downloaded_date 06/12/2022 release_date 12/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF836SSR.bed.gz processed_file_md5 9c14a924d550b17d15d0d50cf1bdc5ec wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF836SSR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF836SSR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF836SSR/@@download/ENCFF836SSR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF836SSR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 97d8198060c21fef28c412631502fa70 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=NR;Reference=NR;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001625,GEO:GSM803476,FactorBook:ENCSR000BMJ;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BMJ] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11A • GM12878 NGENCDNXXWSHPR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCDNXXWSHPR data_source ENCODE Download track Download number_of_intervals 17,868 bp_covered 4,390,708 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 320,434 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF733GJB.bed.gz processed_file_md5 416dcdd1dfc4cabd4d3d5d4c93f4e961 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF733GJB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF733GJB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF733GJB/@@download/ENCFF733GJB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF733GJB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 4ec155a77e264f1352afac7f1901d088 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001486,GEO:GSM803388,FactorBook:ENCSR000BHA;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq BCL11A conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHA] [Life stage: Adult] [TF ChIP-seq peaks]
BCL11A • GM12878 NGENCG5OVAEQVQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCG5OVAEQVQ data_source ENCODE Download track Download number_of_intervals 10,609 bp_covered 2,421,073 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1 technical_replicate 1_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 172,888 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF300SVL.bed.gz processed_file_md5 f0c707cbd68ebd7404148f3c234a5a7b wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF300SVL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF300SVL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF300SVL/@@download/ENCFF300SVL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF300SVL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 131d0f2b736eb3837afbbf361712ca92 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001486,GEO:GSM803388,FactorBook:ENCSR000BHA;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHA] [Life stage: Adult] [TF ChIP-seq peaks]
BCL11A • H1-hESC NGENCHXQPV3GFE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCHXQPV3GFE data_source ENCODE Download track Download number_of_intervals 1,193 bp_covered 171,583 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIP biological_replicate 1 technical_replicate 1_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 20,611 downloaded_date 06/12/2022 release_date 01/02/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF833IPY.bed.gz processed_file_md5 da3636a44e8c252a60249c0c1a0fb5d2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF833IPY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF833IPY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF833IPY/@@download/ENCFF833IPY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF833IPY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 2db687951ad7c258fb4f882b17fbeea2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM803396,FactorBook:ENCSR000BIP,UCSC-ENCODE-hg19:wgEncodeEH001527;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BIP] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11A • HEK293 NGENCKHSMEHQ7D • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCKHSMEHQ7D data_source ENCODE Download track Download number_of_intervals 9,263 bp_covered 3,168,925 output_type conservative IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 184,097 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262ZVN.bed.gz processed_file_md5 b82400e3a1dc2fee9ab094d8fe4ab02c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262ZVN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF262ZVN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF262ZVN/@@download/ENCFF262ZVN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF262ZVN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 61c3459aef6cfa078cd256aed50a0ada data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR021DJC,GEO:GSE91420;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-25,2016-10-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1, 2) TF ChIP-seq BCL11A conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR021DJC] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11A • GM12878 NGENCLJ57FJOJR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCLJ57FJOJR data_source ENCODE Download track Download number_of_intervals 21,232 bp_covered 5,288,696 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 376,634 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF717YPR.bed.gz processed_file_md5 6f7bae7edb3bffe8de4da837cf5ce7de wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF717YPR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF717YPR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF717YPR/@@download/ENCFF717YPR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF717YPR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 7e0b5a0f51b2e52b618316345b04542c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=UCSC-ENCODE-hg19:wgEncodeEH001486,GEO:GSM803388,FactorBook:ENCSR000BHA;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BHA] [Life stage: Adult] [TF ChIP-seq peaks]
BCL11A • HEK293 NGENCWZGDSZL2P • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCWZGDSZL2P data_source ENCODE Download track Download number_of_intervals 7,687 bp_covered 2,519,835 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1 technical_replicate 1_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 150,582 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF023ICS.bed.gz processed_file_md5 5aeefe4ce642c2bc0ade89bd36f08418 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF023ICS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF023ICS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF023ICS/@@download/ENCFF023ICS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF023ICS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 85b4b803d48ef91877c6f6ec6fd3959d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR021DJC,GEO:GSE91420;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-25,2016-10-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 1) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR021DJC] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11A • HEK293 NGENCZ33FV742L • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HEK293 TF Show metadata Download track Track metadata identifier NGENCZ33FV742L data_source ENCODE Download track Download number_of_intervals 3,863 bp_covered 1,285,344 output_type IDR thresholded peaks genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 2 technical_replicate 2_1 antibody BCL11A assay TF ChIP-seq file_format bed narrowPeak file_size 75,049 downloaded_date 06/12/2022 release_date 08/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF562RMM.bed.gz processed_file_md5 00b229869376b76b84eb0684fe489786 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF562RMM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF562RMM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF562RMM/@@download/ENCFF562RMM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF562RMM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 1a9fbe69b1fab58cec01561c26e0595d data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR021DJC,GEO:GSE91420;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2016-10-25,2016-10-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HEK293;ENCODE_cell_slims=epithelial cell;ENCODE_system_slims=excretory system;ENCODE_biosample_term_synonyms=human embryonic kidney cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:site-specific recombination|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Embryonic track_name ENCODE HEK293 (repl. 2) TF ChIP-seq BCL11A IDR thresholded peaks (narrowPeak) [Experiment: ENCSR021DJC] [Life stage: Embryonic] [TF ChIP-seq peaks]
BCL11A • GM12878 NGFTB3KET2BTGJ • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB3KET2BTGJ data_source Factorbook Download track Download number_of_intervals 9,682 bp_covered 145,230 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 167,152 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_ARGRGGAASTGARAV_sorted.bed.gz processed_file_md5 5a4a0ab4103599eac49a156da0607b92 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_ARGRGGAASTGARAV_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_ARGRGGAASTGARAV_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF824QXX_ARGRGGAASTGARAV.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF824QXX_ARGRGGAASTGARAV.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 2caf2bbe1c3af2730fb672b0febcefc5 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF824QXX;ENCODE_bigBed_id=ENCFF717YPR;PMID=34755879;Motif_sequence=ARGRGGAASTGARAV;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHA] [TFBS]
BCL11A • HEK293 NGFTB4M2K377US • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTB4M2K377US data_source Factorbook Download track Download number_of_intervals 7,220 bp_covered 216,600 output_type transcription factor binding sites significant genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 95,126 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG_filtered.bed.gz processed_file_md5 d1f12db77accae0d4adb91cdf60ca1b6 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d13564ef560f27c1bde1e870c92db5a4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF972WFM;ENCODE_bigBed_id=ENCFF294OHB;PMID=34755879;Motif_sequence=TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR021DJC] [TFBS]
BCL11A • H1-hESC NGFTB5FUN5KQ2M • Factorbook34755879 Motif finding H1-hESC TFBS Show metadata Download track Track metadata identifier NGFTB5FUN5KQ2M data_source Factorbook Download track Download number_of_intervals 252 bp_covered 2,016 output_type transcription factor binding sites all genome_build hg38 cell_type H1-hESC biosample_type Cell line biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BIP biological_replicate 1 technical_replicate 1_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 3,223 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_WGGAATGY_sorted.bed.gz processed_file_md5 26f655e0b03f2d3333ce525141a15786 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_WGGAATGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF847HXU_WGGAATGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF847HXU_WGGAATGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF847HXU_WGGAATGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 a139ea11ce8545ef73966de27da64092 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens H1;Original_cell_type=H1;Lab=Richard Myers, HAIB;System=NR;ENCODE_BED_id=ENCFF847HXU;ENCODE_bigBed_id=ENCFF833IPY;PMID=34755879;Motif_sequence=WGGAATGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Unknown track_name Factorbook H1-hESC (repl. 1) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BIP] [TFBS]
BCL11A • GM12878 NGFTBBGYAL3G6J • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBBGYAL3G6J data_source Factorbook Download track Download number_of_intervals 3,790 bp_covered 56,850 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 65,700 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_AGTCATANTGARAGY_sorted.bed.gz processed_file_md5 ad911c07a40f2206566cb55885bc865a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_AGTCATANTGARAGY_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_AGTCATANTGARAGY_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF824QXX_AGTCATANTGARAGY.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF824QXX_AGTCATANTGARAGY.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e0e18d4c098d3d44a6e288a64d697cb1 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF824QXX;ENCODE_bigBed_id=ENCFF717YPR;PMID=34755879;Motif_sequence=AGTCATANTGARAGY;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHA] [TFBS]
BCL11A • HEK293 NGFTBBLQ6WVY3T • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBBLQ6WVY3T data_source Factorbook Download track Download number_of_intervals 4,028 bp_covered 40,280 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 47,160 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_DGTGACTCAT_sorted.bed.gz processed_file_md5 ca23f6bcf7d874dd32b277fac51c9028 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_DGTGACTCAT_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_DGTGACTCAT_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF972WFM_DGTGACTCAT.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF972WFM_DGTGACTCAT.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3754456cf9098cf1b98c7aee77b79b88 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF972WFM;ENCODE_bigBed_id=ENCFF294OHB;PMID=34755879;Motif_sequence=DGTGACTCAT;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR021DJC] [TFBS]
BCL11A • HEK293 NGFTBGEVYBOJWY • Factorbook34755879 Motif finding HEK293 TFBS Show metadata Download track Track metadata identifier NGFTBGEVYBOJWY data_source Factorbook Download track Download number_of_intervals 17,209 bp_covered 516,270 output_type transcription factor binding sites all genome_build hg38 cell_type HEK293 biosample_type Cell line biosample_term_id EFO:0001182 tissue_category Kidney encode_experiment_id ENCSR021DJC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 257,996 downloaded_date 07/10/2024 release_date 10/25/2016 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG_sorted.bed.gz processed_file_md5 103d33c5298e5bee89302842fc4ecf74 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF972WFM_TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d13564ef560f27c1bde1e870c92db5a4 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A;Original_cell_type=HEK293;Lab=Michael Snyder, Stanford;System=excretory system;ENCODE_BED_id=ENCFF972WFM;ENCODE_bigBed_id=ENCFF294OHB;PMID=34755879;Motif_sequence=TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0001182;is_hg38_lifted=no system_category Renal life_stage Unknown track_name Factorbook HEK293 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR021DJC] [TFBS]
BCL11A • GM12878 NGFTBKCUAH522G • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBKCUAH522G data_source Factorbook Download track Download number_of_intervals 6,824 bp_covered 102,360 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 117,692 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_TGASTCATWWYNRRA_sorted.bed.gz processed_file_md5 a3a663d1130d313311e9377876c383c4 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_TGASTCATWWYNRRA_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_TGASTCATWWYNRRA_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF824QXX_TGASTCATWWYNRRA.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF824QXX_TGASTCATWWYNRRA.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 bc8fa90d0cc0a181610c8306ed6fa9ff data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF824QXX;ENCODE_bigBed_id=ENCFF717YPR;PMID=34755879;Motif_sequence=TGASTCATWWYNRRA;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHA] [TFBS]
BCL11A • GM12878 NGFTBPSRZPBXML • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBPSRZPBXML data_source Factorbook Download track Download number_of_intervals 4,822 bp_covered 53,042 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BHA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody BCL11A assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 68,529 downloaded_date 07/10/2024 release_date 07/18/2011 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_YCCCWGGGGAR_sorted.bed.gz processed_file_md5 b67246232410f8e0bd59f5b81e56a2f3 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_YCCCWGGGGAR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF824QXX_YCCCWGGGGAR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF824QXX_YCCCWGGGGAR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF824QXX_YCCCWGGGGAR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 3e63123eace5bbfe9eb62910d4f64711 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF824QXX;ENCODE_bigBed_id=ENCFF717YPR;PMID=34755879;Motif_sequence=YCCCWGGGGAR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding BCL11A transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BHA] [TFBS]