E2F8 • GM12878 NGFTBPRLG4OEC2 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBPRLG4OEC2 data_source Factorbook Download track Download number_of_intervals 2,882 bp_covered 31,702 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR793HVL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F8 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 39,093 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF961ZFW_NSGCSGGAARH_sorted.bed.gz processed_file_md5 cbb3599fc3b161141fea0aec3d46611a wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF961ZFW_NSGCSGGAARH_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF961ZFW_NSGCSGGAARH_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF961ZFW_NSGCSGGAARH.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF961ZFW_NSGCSGGAARH.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 e130cf1e6a3343c05fdcaa837cdc5d0a data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF961ZFW;ENCODE_bigBed_id=ENCFF910KAC;PMID=34755879;Motif_sequence=NSGCSGGAARH;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding E2F8 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR793HVL] [TFBS]
E2F8 • K562 NGFTBRI4N6XKND • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBRI4N6XKND data_source Factorbook Download track Download number_of_intervals 6,011 bp_covered 66,121 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR953DVM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F8 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 77,155 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925GLW_DGGCGGRARWD_sorted.bed.gz processed_file_md5 adc56f5475a56f0e758a1d45988d6f31 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925GLW_DGGCGGRARWD_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925GLW_DGGCGGRARWD_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF925GLW_DGGCGGRARWD.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF925GLW_DGGCGGRARWD.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 391a82f3ef9c6190c05a84fa41264acd data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF925GLW;ENCODE_bigBed_id=ENCFF985IKY;PMID=34755879;Motif_sequence=DGGCGGRARWD;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F8 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR953DVM] [Life stage: Adult] [TFBS]
E2F8 • GM12878 NGFTBXFWI6ZBH3 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTBXFWI6ZBH3 data_source Factorbook Download track Download number_of_intervals 1,282 bp_covered 25,640 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR793HVL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F8 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 24,820 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF961ZFW_CGCRCSNHDVTGACGTCACR_sorted.bed.gz processed_file_md5 8ba7f3028d85cf9672d35aeb8200cfbf wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF961ZFW_CGCRCSNHDVTGACGTCACR_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF961ZFW_CGCRCSNHDVTGACGTCACR_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF961ZFW_CGCRCSNHDVTGACGTCACR.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF961ZFW_CGCRCSNHDVTGACGTCACR.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 5bd633c3998defbc83615ffaaa1372db data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF961ZFW;ENCODE_bigBed_id=ENCFF910KAC;PMID=34755879;Motif_sequence=CGCRCSNHDVTGACGTCACR;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 1, 2) Motif finding E2F8 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR793HVL] [TFBS]
E2F8 • K562 NGFTBYAI5ZMYIM • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBYAI5ZMYIM data_source Factorbook Download track Download number_of_intervals 6,052 bp_covered 66,572 output_type transcription factor binding sites all genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR953DVM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F8 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 80,777 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925GLW_CACTTCCKGYB_sorted.bed.gz processed_file_md5 918da4805f5478b13701a305605088e9 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925GLW_CACTTCCKGYB_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF925GLW_CACTTCCKGYB_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF925GLW_CACTTCCKGYB.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF925GLW_CACTTCCKGYB.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 34c964e1e2a587ec97309908fce8efa8 data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF925GLW;ENCODE_bigBed_id=ENCFF985IKY;PMID=34755879;Motif_sequence=CACTTCCKGYB;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F8 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR953DVM] [Life stage: Adult] [TFBS]
E2F8 • K562 NGFTBZ6ULWPQ7U • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTBZ6ULWPQ7U data_source Factorbook Download track Download number_of_intervals 14 bp_covered 294 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR953DVM biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E2F8 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 561 downloaded_date 07/10/2024 release_date 01/26/2018 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF925GLW_CGCGSVNYDVTGACGTCASRS_filtered.bed.gz processed_file_md5 d5d7884a55e2f6acc9610786a2921691 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF925GLW_CGCGSVNYDVTGACGTCASRS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF925GLW_CGCGSVNYDVTGACGTCASRS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF925GLW_CGCGSVNYDVTGACGTCASRS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF925GLW_CGCGSVNYDVTGACGTCASRS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 f383a5d1b47af78c86605935c0ffe63d data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF925GLW;ENCODE_bigBed_id=ENCFF985IKY;PMID=34755879;Motif_sequence=CGCGSVNYDVTGACGTCASRS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding E2F8 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR953DVM] [Life stage: Adult] [TFBS]
E4F1 • GM12878 NGENC5VQUGK4PH • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENC5VQUGK4PH data_source ENCODE Download track Download number_of_intervals 4,620 bp_covered 1,662,578 output_type conservative IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR439WAF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 82,021 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF388DDE.bed.gz processed_file_md5 cc6681fccfe3dfbecfdd8432ce5740f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF388DDE.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF388DDE.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF388DDE/@@download/ENCFF388DDE.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF388DDE.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 038d70c09dfc4bdb1de141f1c6de9449 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR439WAF,GEO:GSE127681;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq E4F1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR439WAF] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • K562 NGENCB3WYR2W4C • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCB3WYR2W4C data_source ENCODE Download track Download number_of_intervals 1,667 bp_covered 588,222 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR003GUC biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 34,304 downloaded_date 06/12/2022 release_date 07/16/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF429AIS.bed.gz processed_file_md5 a567f248de94536e48a328fc3ad5f3cd wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF429AIS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF429AIS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF429AIS/@@download/ENCFF429AIS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF429AIS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9060fa662f162445e5776b6361e280d2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE176606;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq E4F1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR003GUC] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • MCF-7 NGENCDZ4TEVIHK • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCDZ4TEVIHK data_source ENCODE Download track Download number_of_intervals 1,363 bp_covered 455,119 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR841YWU biological_replicate 1 technical_replicate 1_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 27,664 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF837DBR.bed.gz processed_file_md5 3aca8b8ae21388c7213cb364c889d5b7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF837DBR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF837DBR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF837DBR/@@download/ENCFF837DBR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF837DBR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 9297962943b0d9becfd839f003b1dc40 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR841YWU,GEO:GSE127582;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR841YWU] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • GM12878 NGENCEPELYNJXZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCEPELYNJXZ data_source ENCODE Download track Download number_of_intervals 2,315 bp_covered 823,637 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR439WAF biological_replicate 1 technical_replicate 1_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 40,015 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF339EPB.bed.gz processed_file_md5 f9f253e274b8590c2f57ec9ff92d775c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF339EPB.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF339EPB.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF339EPB/@@download/ENCFF339EPB.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF339EPB.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ef1f2b9f7804a6c6d02ac5ae6ffc8239 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR439WAF,GEO:GSE127681;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR439WAF] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • K562 NGENCGCV4BF2NG • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCGCV4BF2NG data_source ENCODE Download track Download number_of_intervals 35,526 bp_covered 19,179,632 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR731LHZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 622,508 downloaded_date 06/12/2022 release_date 12/02/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF622HMZ.bed.gz processed_file_md5 87af5bd0c6a0b3e18fc7beb9b52521b7 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF622HMZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF622HMZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF622HMZ/@@download/ENCFF622HMZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF622HMZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 eda6a9fa1b2aed5d6f105a2e654fab51 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=FactorBook:ENCSR731LHZ,GEO:GSE127460;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR731LHZ] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • K562 NGENCIZGHA2DUT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCIZGHA2DUT data_source ENCODE Download track Download number_of_intervals 32,505 bp_covered 17,451,677 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR731LHZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 575,635 downloaded_date 06/12/2022 release_date 12/02/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF600JEH.bed.gz processed_file_md5 3b4196e40d6d1a8fd31eb74da5fdb1b5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF600JEH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF600JEH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF600JEH/@@download/ENCFF600JEH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF600JEH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 053dc1ad641771379fa7fb3b1d893868 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=FactorBook:ENCSR731LHZ,GEO:GSE127460;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq E4F1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR731LHZ] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • GM12878 NGENCJ3ZRPHHDN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCJ3ZRPHHDN data_source ENCODE Download track Download number_of_intervals 5,217 bp_covered 1,903,066 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR439WAF biological_replicate 2 technical_replicate 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 89,801 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF517JZP.bed.gz processed_file_md5 35bb44073f221ff126a1e0f95fed068f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF517JZP.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF517JZP.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF517JZP/@@download/ENCFF517JZP.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF517JZP.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 18df4d4f89dc58bd4c674cc9f86998c9 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR439WAF,GEO:GSE127681;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 2) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR439WAF] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • K562 NGENCLDVCZPZYY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCLDVCZPZYY data_source ENCODE Download track Download number_of_intervals 34,162 bp_covered 19,096,132 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR731LHZ biological_replicate 1 technical_replicate 1_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 587,406 downloaded_date 06/12/2022 release_date 12/02/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF936LTH.bed.gz processed_file_md5 b9c400b2ae9c28c65c106e28ddb1ef1c wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF936LTH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF936LTH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF936LTH/@@download/ENCFF936LTH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF936LTH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 004d118f9e5a3bf8e46cf7daa09888cc data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=FactorBook:ENCSR731LHZ,GEO:GSE127460;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR731LHZ] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • MCF-7 NGENCMROMMHNPR • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCMROMMHNPR data_source ENCODE Download track Download number_of_intervals 1,015 bp_covered 339,727 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR841YWU biological_replicate 2 technical_replicate 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 20,380 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF003KMC.bed.gz processed_file_md5 c3d6c4818e78102567bb6f5e902651d1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF003KMC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF003KMC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF003KMC/@@download/ENCFF003KMC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF003KMC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5b3488e751c2eac0d82784cd1b64e475 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR841YWU,GEO:GSE127582;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 2) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR841YWU] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • K562 NGENCNZAOBEFFN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCNZAOBEFFN data_source ENCODE Download track Download number_of_intervals 1,719 bp_covered 574,439 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR003GUC biological_replicate 1 technical_replicate 1_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 35,247 downloaded_date 06/12/2022 release_date 07/16/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF773UUL.bed.gz processed_file_md5 d6acc190006319fec6270ee81391a404 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF773UUL.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF773UUL.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF773UUL/@@download/ENCFF773UUL.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF773UUL.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 dcfebfc211ad9008c5d222c99086b31f data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE176606;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR003GUC] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • MCF-7 NGENCO36A2EZ3K • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCO36A2EZ3K data_source ENCODE Download track Download number_of_intervals 2,337 bp_covered 781,328 output_type conservative IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR841YWU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 47,440 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF411WBY.bed.gz processed_file_md5 9bf067e00c9738786c27061e53d18992 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF411WBY.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF411WBY.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF411WBY/@@download/ENCFF411WBY.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF411WBY.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ea822b68c37d1f6dcf17fde1ec971493 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR841YWU,GEO:GSE127582;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq E4F1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR841YWU] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • K562 NGENCO4FMN5RP4 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCO4FMN5RP4 data_source ENCODE Download track Download number_of_intervals 15,091 bp_covered 6,224,634 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR731LHZ biological_replicate 2 technical_replicate 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 280,805 downloaded_date 06/12/2022 release_date 12/02/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF977ALD.bed.gz processed_file_md5 6dad1eee49c559ff657242d122dd8d38 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF977ALD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF977ALD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF977ALD/@@download/ENCFF977ALD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF977ALD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6a9bffce0bcfad3dc5f55b1ae88c02a1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=FactorBook:ENCSR731LHZ,GEO:GSE127460;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR731LHZ] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • MCF-7 NGENCRIKMOPTAY • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq MCF-7 TF Show metadata Download track Track metadata identifier NGENCRIKMOPTAY data_source ENCODE Download track Download number_of_intervals 2,476 bp_covered 827,198 output_type IDR thresholded peaks genome_build hg38 cell_type MCF-7 biosample_type Cell line biosample_term_id EFO:0001203 tissue_category Breast encode_experiment_id ENCSR841YWU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 50,146 downloaded_date 06/12/2022 release_date 12/03/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF679UFD.bed.gz processed_file_md5 cad192b2ec2f45336dce15ae35cf08f1 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF679UFD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF679UFD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF679UFD/@@download/ENCFF679UFD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF679UFD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 f567123b6d4fe836aa210257cb3e8957 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens MCF-7;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 69 years;Reference=NR;External_resources=FactorBook:ENCSR841YWU,GEO:GSE127582;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=MCF-7;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=integumental system,exocrine system;ENCODE_biosample_term_synonyms=MCF7 cell,MCF-7 cell,MCF7;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001203;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE MCF-7 (repl. 1, 2) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR841YWU] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • GM12878 NGENCU27PAVIJL • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCU27PAVIJL data_source ENCODE Download track Download number_of_intervals 5,652 bp_covered 2,042,045 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR439WAF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 100,232 downloaded_date 06/12/2022 release_date 12/30/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF007QKJ.bed.gz processed_file_md5 3fdbf1685966c15c37817c7f5c017c68 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF007QKJ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF007QKJ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF007QKJ/@@download/ENCFF007QKJ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF007QKJ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0037eb05805e934ac244955494426d91 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:31969180;External_resources=FactorBook:ENCSR439WAF,GEO:GSE127681;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2018-01-26,2014-07-07;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 1, 2) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR439WAF] [Life stage: Adult] [TF ChIP-seq peaks]
E4F1 • K562 NGENCXNTL7YGBC • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCXNTL7YGBC data_source ENCODE Download track Download number_of_intervals 641 bp_covered 214,511 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR003GUC biological_replicate 2 technical_replicate 2_1 antibody E4F1 assay TF ChIP-seq file_format bed narrowPeak file_size 13,368 downloaded_date 06/12/2022 release_date 07/16/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF065OIU.bed.gz processed_file_md5 b6eb54d72b2f1e640978b12a118abbe9 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF065OIU.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF065OIU.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF065OIU/@@download/ENCFF065OIU.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF065OIU.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a7c0ae303215d4600b8d168870281ad1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 53 years;Reference=NR;External_resources=GEO:GSE176606;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2021-05-18,2020-06-30;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.5.0 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq E4F1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR003GUC] [Life stage: Adult] [TF ChIP-seq peaks]