EGR1 • K562 NGENCOE7OLFSNN • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCOE7OLFSNN data_source ENCODE Download track Download number_of_intervals 30,500 bp_covered 6,882,711 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR000BNE biological_replicate 2 technical_replicate 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 519,477 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF335AHQ.bed.gz processed_file_md5 d63d3512bc86df7f93b49898b31df9c2 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF335AHQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF335AHQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF335AHQ/@@download/ENCFF335AHQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF335AHQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 952a7a4542ee78c9ed26d78afbca446c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BNE,UCSC-ENCODE-hg19:wgEncodeEH001646,GEO:GSM803414;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BNE] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • K562 NGENCOFTKQAST5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCOFTKQAST5 data_source ENCODE Download track Download number_of_intervals 24,865 bp_covered 7,961,558 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR024CNP biological_replicate 2 technical_replicate 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 462,599 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF111FBM.bed.gz processed_file_md5 e29bbbb8bc2e6ad9e9349b8f70de9010 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF111FBM.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF111FBM.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF111FBM/@@download/ENCFF111FBM.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF111FBM.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c49c35612f61b7f1dfd25f2c5203f81b data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE105243,FactorBook:ENCSR024CNP;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-05-17,2016-11-01;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR024CNP] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • Liver NGENCOKVPAGABT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Liver TF Show metadata Download track Track metadata identifier NGENCOKVPAGABT data_source ENCODE Download track Download number_of_intervals 12,227 bp_covered 4,254,827 output_type IDR thresholded peaks genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR736BUG biological_replicate 2 technical_replicate 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 213,073 downloaded_date 06/12/2022 release_date 12/07/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF733OTZ.bed.gz processed_file_md5 2b9f49af9ad5f16f841ea71d7622802f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF733OTZ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF733OTZ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF733OTZ/@@download/ENCFF733OTZ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF733OTZ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 c6d0edb9f27f16621460f12b9aad9680 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens with nonobstructive coronary artery disease| liver tissue male adult (32 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=adult 32 years;Reference=NR;External_resources=GEO:GSE127464,FactorBook:ENCSR736BUG;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2016-06-30,2016-01-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE Liver (repl. 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR736BUG] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • WTC11 NGENCQRQW5DFNQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCQRQW5DFNQ data_source ENCODE Download track Download number_of_intervals 98 bp_covered 24,682 output_type conservative IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR426WZU biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 2,275 downloaded_date 07/10/2025 release_date 08/12/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF904FUC.bed.gz processed_file_md5 22561dbb4d14b43f58f647957e983c08 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF904FUC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF904FUC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF904FUC/@@download/ENCFF904FUC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF904FUC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a75b1cb244fbdb90e5177817dabbe526 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1, (insertion) using TALEN inserting M. musculus Neurog2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231149;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-08-17,2022-04-13;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR, TALEN|Category:insertion|Zygosity:heterozygous];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 1, 2) TF ChIP-seq EGR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR426WZU] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • H1-hESC NGENCR4YNNTBMQ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCR4YNNTBMQ data_source ENCODE Download track Download number_of_intervals 9,105 bp_covered 2,329,993 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BJA biological_replicate 2 technical_replicate 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 158,899 downloaded_date 06/12/2022 release_date 01/02/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF798RRD.bed.gz processed_file_md5 12937483765ef0b1e4a54789e170b13a wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF798RRD.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF798RRD.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF798RRD/@@download/ENCFF798RRD.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF798RRD.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 0b350df7bb76c5931c1e2496b63a87c4 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM803430,UCSC-ENCODE-hg19:wgEncodeEH001538,FactorBook:ENCSR000BJA;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BJA] [Life stage: Embryonic] [TF ChIP-seq peaks]
EGR1 • Glutamatergic neuron NGENCV3ED4XTH6 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Glutamatergic neuron TF Show metadata Download track Track metadata identifier NGENCV3ED4XTH6 data_source ENCODE Download track Download number_of_intervals 16 bp_covered 3,825 output_type IDR thresholded peaks genome_build hg38 cell_type Glutamatergic neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000679 tissue_category Brain encode_experiment_id ENCSR749BFL biological_replicate 2 technical_replicate 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 492 downloaded_date 07/10/2025 release_date 08/12/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF496MTN.bed.gz processed_file_md5 c27dfb663a1b93593c8527b258d44d98 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF496MTN.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF496MTN.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF496MTN/@@download/ENCFF496MTN.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF496MTN.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 aa85969740cd417b14639919fd65a067 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens glutamatergic neuron genetically modified (insertion) using CRISPR targeting H. sapiens EGR1, (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230933;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-08-17,2022-04-13;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=glutamatergic neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:TALEN, CRISPR|Category:insertion|Zygosity:heterozygous];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000679;is_hg38_lifted=no system_category Nervous life_stage Adult track_name ENCODE Glutamatergic neuron (repl. 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR749BFL] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • WTC11 NGENCV5ZGNBS77 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq WTC11 TF Show metadata Download track Track metadata identifier NGENCV5ZGNBS77 data_source ENCODE Download track Download number_of_intervals 77 bp_covered 17,912 output_type IDR thresholded peaks genome_build hg38 cell_type WTC11 biosample_type Cell line biosample_term_id EFO:0009747 tissue_category Skin encode_experiment_id ENCSR426WZU biological_replicate 2 technical_replicate 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 1,731 downloaded_date 07/10/2025 release_date 08/12/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF267KCS.bed.gz processed_file_md5 a59c2cfe55bbb819fb21560eccfd1252 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF267KCS.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF267KCS.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF267KCS/@@download/ENCFF267KCS.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF267KCS.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 14cd9a4c2b4ec6c125c13ec704c45ec5 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1, (insertion) using TALEN inserting M. musculus Neurog2;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE231149;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-08-17,2022-04-13;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=WTC11;ENCODE_cell_slims=stem cell,fibroblast,induced pluripotent stem cell,connective tissue cell;ENCODE_system_slims=integumental system;ENCODE_biosample_term_synonyms=WTC-11,WTC11;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:CRISPR, TALEN|Category:insertion|Zygosity:heterozygous];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0009747;is_hg38_lifted=no system_category Integumentary life_stage Adult track_name ENCODE WTC11 (repl. 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR426WZU] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • Liver NGENCVZEK73KCE • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Liver TF Show metadata Download track Track metadata identifier NGENCVZEK73KCE data_source ENCODE Download track Download number_of_intervals 5,801 bp_covered 1,999,210 output_type IDR thresholded peaks genome_build hg38 cell_type Liver biosample_type Tissue biosample_term_id UBERON:0002107 tissue_category Liver encode_experiment_id ENCSR290ZOS biological_replicate 2 technical_replicate 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 103,233 downloaded_date 06/12/2022 release_date 12/08/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF470XSO.bed.gz processed_file_md5 4c6a2e7e5e52a20604bfe8866498be7f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF470XSO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF470XSO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF470XSO/@@download/ENCFF470XSO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF470XSO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 603a648753331b67731fc04f820952f1 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens liver tissue female child (4 years);Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,RegulomeDB_2_2,DREAM;Life_stage_age=child 4 years;Reference=NR;External_resources=GEO:GSE127567,FactorBook:ENCSR290ZOS;Project=ENCODE;Award=U54HG006998;Experiment_date_released=2018-02-08,2016-01-29;Submitted_track_name=rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=liver;ENCODE_cell_slims=NR;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=UBERON:0002107;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE Liver (repl. 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR290ZOS] [Life stage: Child] [TF ChIP-seq peaks]
EGR1 • K562 NGENCWOV7VVCGT • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCWOV7VVCGT data_source ENCODE Download track Download number_of_intervals 24,909 bp_covered 7,901,638 output_type IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR024CNP biological_replicate 1 technical_replicate 1_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 464,347 downloaded_date 06/12/2022 release_date 11/29/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF811GJA.bed.gz processed_file_md5 0e793adcac717075fd722a4b186f3894 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF811GJA.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF811GJA.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF811GJA/@@download/ENCFF811GJA.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF811GJA.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 27c4e9b9f17b7b8725d75d8a0a85d0fe data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC7333332;External_resources=GEO:GSE105243,FactorBook:ENCSR024CNP;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-05-17,2016-11-01;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR024CNP] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • H1-hESC NGENCWYXJ6TJ5M • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq H1-hESC TF Show metadata Download track Track metadata identifier NGENCWYXJ6TJ5M data_source ENCODE Download track Download number_of_intervals 11,366 bp_covered 2,923,650 output_type IDR thresholded peaks genome_build hg38 cell_type H1-hESC biosample_type Stem cell biosample_term_id EFO:0003042 tissue_category Embryo encode_experiment_id ENCSR000BJA biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 214,557 downloaded_date 06/12/2022 release_date 01/02/2021 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF451BLH.bed.gz processed_file_md5 8c7459a8d6cd3764555158553093fabb wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF451BLH.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF451BLH.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF451BLH/@@download/ENCFF451BLH.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF451BLH.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 6bdd8bf0f511022bc69a4ba7a9172461 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens H1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32737473;External_resources=GEO:GSM803430,UCSC-ENCODE-hg19:wgEncodeEH001538,FactorBook:ENCSR000BJA;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2011-07-18;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=H1;ENCODE_cell_slims=embryonic cell,stem cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=H1;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0003042;is_hg38_lifted=no system_category Embryo life_stage Embryonic track_name ENCODE H1-hESC (repl. 1, 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BJA] [Life stage: Embryonic] [TF ChIP-seq peaks]
EGR1 • HepG2 NGENCX6THYPH5Q • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HepG2 TF Show metadata Download track Track metadata identifier NGENCX6THYPH5Q data_source ENCODE Download track Download number_of_intervals 28,724 bp_covered 15,314,001 output_type IDR thresholded peaks genome_build hg38 cell_type HepG2 biosample_type Cell line biosample_term_id EFO:0001187 tissue_category Liver encode_experiment_id ENCSR026GSW biological_replicate 1 technical_replicate 1_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 556,623 downloaded_date 06/12/2022 release_date 10/21/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF476MTO.bed.gz processed_file_md5 e4952defdbafcb9d257950cc64513b62 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF476MTO.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF476MTO.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF476MTO/@@download/ENCFF476MTO.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF476MTO.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 5e6fd2b955edf1bb3ba2261048fe9133 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=child 15 years;Reference=NR;External_resources=GEO:GSE169906;Project=ENCODE;Award=UM1HG009411;Experiment_date_released=2020-10-22,2020-06-26,2020-08-14;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=HepG2;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=exocrine system,endocrine system,digestive system;ENCODE_biosample_term_synonyms=Hep-G2,HepG2 cell;Analysis_title=ENCODE4 v1.5.1 GRCh38;GM=[Method:CRISPR|Category:insertion];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0001187;is_hg38_lifted=no system_category Digestive life_stage Child track_name ENCODE HepG2 (repl. 1) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR026GSW] [Life stage: Child] [TF ChIP-seq peaks]
EGR1 • Glutamatergic neuron NGENCYD4WSID4A • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Glutamatergic neuron TF Show metadata Download track Track metadata identifier NGENCYD4WSID4A data_source ENCODE Download track Download number_of_intervals 92 bp_covered 22,025 output_type IDR thresholded peaks genome_build hg38 cell_type Glutamatergic neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000679 tissue_category Brain encode_experiment_id ENCSR749BFL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 2,097 downloaded_date 07/10/2025 release_date 08/12/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF799ODI.bed.gz processed_file_md5 33397cc54177c5d3b7cfd7f64fd170e5 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF799ODI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF799ODI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF799ODI/@@download/ENCFF799ODI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF799ODI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ffc859d6e6f537ece3344b299df339f7 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens glutamatergic neuron genetically modified (insertion) using CRISPR targeting H. sapiens EGR1, (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230933;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-08-17,2022-04-13;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=glutamatergic neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:TALEN, CRISPR|Category:insertion|Zygosity:heterozygous];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000679;is_hg38_lifted=no system_category Nervous life_stage Adult track_name ENCODE Glutamatergic neuron (repl. 1, 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR749BFL] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • Ishikawa NGENCYE4Y6DSLZ • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENCYE4Y6DSLZ data_source ENCODE Download track Download number_of_intervals 8,384 bp_covered 2,471,936 output_type IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BSQ biological_replicate 1 technical_replicate 1_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 153,464 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570WOR.bed.gz processed_file_md5 ac161dc6544a737095a76a2caf64ca74 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570WOR.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF570WOR.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF570WOR/@@download/ENCFF570WOR.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF570WOR.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 ccaaa88f1b6e11800a436dea964a1904 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=GEO:GSM1010888,FactorBook:ENCSR000BSQ,UCSC-ENCODE-hg19:wgEncodeEH003232;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 1) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BSQ] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • GM12878 NGENCYR4FJ46X5 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq GM12878 TF Show metadata Download track Track metadata identifier NGENCYR4FJ46X5 data_source ENCODE Download track Download number_of_intervals 2,475 bp_covered 614,789 output_type IDR thresholded peaks genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BRG biological_replicate 3 technical_replicate 3_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 46,898 downloaded_date 06/12/2022 release_date 12/11/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF784ATC.bed.gz processed_file_md5 f9aa583210054e5c5c449714e1d01788 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF784ATC.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF784ATC.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF784ATC/@@download/ENCFF784ATC.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF784ATC.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 a8719931e4c2d6742303c4611c31f620 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens GM12878;Lab=Richard Myers, HAIB;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,RegulomeDB_2_1,ENCYCLOPEDIAv2,ENCYCLOPEDIAv1,RegulomeDB_2_2;Life_stage_age=NR;Reference=PMID:32728046;External_resources=FactorBook:ENCSR000BRG,UCSC-ENCODE-hg19:wgEncodeEH002328,GEO:GSM1010730;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-02-29,2011-07-18;Submitted_track_name=rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=GM12878;ENCODE_cell_slims=hematopoietic cell,leukocyte,B cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE GM12878 (repl. 3) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BRG] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • Ishikawa NGENCZI3YPIK47 • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Ishikawa TF Show metadata Download track Track metadata identifier NGENCZI3YPIK47 data_source ENCODE Download track Download number_of_intervals 11,764 bp_covered 3,141,886 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Ishikawa biosample_type Cell line biosample_term_id EFO:0005718 tissue_category Female Reproductive encode_experiment_id ENCSR000BSQ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 218,506 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF807UTK.bed.gz processed_file_md5 abe511efa5e0a7c8532a066676481f20 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF807UTK.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ENCFF807UTK.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/2/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF807UTK/@@download/ENCFF807UTK.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF807UTK.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 b7238107e1f1e3c2abbde20793bda985 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens Ishikawa;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 39 years;Reference=PMID:22710073;External_resources=GEO:GSM1010888,FactorBook:ENCSR000BSQ,UCSC-ENCODE-hg19:wgEncodeEH003232;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=Ishikawa;ENCODE_cell_slims=cancer cell;ENCODE_system_slims=reproductive system;ENCODE_biosample_term_synonyms=Ishikawa cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0005718;is_hg38_lifted=no system_category Reproductive life_stage Adult track_name ENCODE Ishikawa (repl. 1, 2) TF ChIP-seq EGR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BSQ] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • Glutamatergic neuron NGENCZLLCDC3TF • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq Glutamatergic neuron TF Show metadata Download track Track metadata identifier NGENCZLLCDC3TF data_source ENCODE Download track Download number_of_intervals 85 bp_covered 20,345 output_type conservative IDR thresholded peaks genome_build hg38 cell_type Glutamatergic neuron biosample_type In vitro differentiated cells biosample_term_id CL:0000679 tissue_category Brain encode_experiment_id ENCSR749BFL biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 1,978 downloaded_date 07/10/2025 release_date 08/12/2022 date_added_to_filer 07/30/2025 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF183USI.bed.gz processed_file_md5 77aa7b630b238d37f53a2becb11de106 wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF183USI.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ENCFF183USI.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/3/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF183USI/@@download/ENCFF183USI.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF183USI.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 556af4d556bc2155bf0e45fccfeb70d2 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens glutamatergic neuron genetically modified (insertion) using CRISPR targeting H. sapiens EGR1, (insertion) using TALEN inserting M. musculus Neurog2 originated from WTC11;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_2_2,RegulomeDB_2_1;Life_stage_age=adult 30 years;Reference=NR;External_resources=GEO:GSE230933;Project=ENCODE;Award=UM1HG009442;Experiment_date_released=2022-08-17,2022-04-13;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=false;ENCODE_biosample_term_name=glutamatergic neuron;ENCODE_cell_slims=neural cell;ENCODE_system_slims=NR;ENCODE_biosample_term_synonyms=NR;Analysis_title=ENCODE4 v1.8.0 GRCh38;GM=[Method:TALEN, CRISPR|Category:insertion|Zygosity:heterozygous];schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=CL:0000679;is_hg38_lifted=no system_category Nervous life_stage Adult track_name ENCODE Glutamatergic neuron (repl. 1, 2) TF ChIP-seq EGR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR749BFL] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • K562 NGENCZLNGHLG7P • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq K562 TF Show metadata Download track Track metadata identifier NGENCZLNGHLG7P data_source ENCODE Download track Download number_of_intervals 28,147 bp_covered 11,152,382 output_type conservative IDR thresholded peaks genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR211LTF biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 550,623 downloaded_date 06/12/2022 release_date 11/28/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF113OPQ.bed.gz processed_file_md5 f760ce953d2ee5fb764fb451023c7a9f wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF113OPQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF113OPQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF113OPQ/@@download/ENCFF113OPQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF113OPQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 377f7acac68077b48290d8ba9e7e7869 data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq conservative IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens K562;Lab=Michael Snyder, Stanford;ENCODE_internal_tags=RegulomeDB_1_0,RegulomeDB_2_0,ENCYCLOPEDIAv2,RegulomeDB_2_1,RegulomeDB_2_2;Life_stage_age=adult 53 years;Reference=PMCID:PMC6724667;External_resources=GEO:GSE105316,FactorBook:ENCSR211LTF;Project=ENCODE;Award=U54HG006996;Experiment_date_released=2017-05-17,2014-07-07;Submitted_track_name=rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=K562;ENCODE_cell_slims=hematopoietic cell,leukocyte,cancer cell;ENCODE_system_slims=immune system;ENCODE_biosample_term_synonyms=K562 cell,K-562 cell,K-562;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name ENCODE K562 (repl. 1, 2) TF ChIP-seq EGR1 conservative IDR thresholded peaks (narrowPeak) [Experiment: ENCSR211LTF] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • HCT116 NGENCZR2QA5HRO • ENCODE22955616 | 41168159 | 31713622 TF ChIP-seq HCT116 TF Show metadata Download track Track metadata identifier NGENCZR2QA5HRO data_source ENCODE Download track Download number_of_intervals 15,041 bp_covered 6,377,064 output_type IDR thresholded peaks genome_build hg38 cell_type HCT116 biosample_type Cell line biosample_term_id EFO:0002824 tissue_category Digestive encode_experiment_id ENCSR000BRZ biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay TF ChIP-seq file_format bed narrowPeak file_size 288,209 downloaded_date 06/12/2022 release_date 12/27/2020 date_added_to_filer 08/21/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF456NPQ.bed.gz processed_file_md5 2f38b2f7646b1c6bb9fc6bea13fa9a1d wget_command wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF456NPQ.bed.gz -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ENCFF456NPQ.bed.gz.tbi -P GADB/Annotationtracks/ENCODE/data/TF-ChIP-seq/narrowpeak/hg38/1/ link_out_url https://www.encodeproject.org raw_file_url https://www.encodeproject.org/files/ENCFF456NPQ/@@download/ENCFF456NPQ.bigBed raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/ENCODE/ENCFF456NPQ.bigBed -P GADB/Annotationtracks/Downloads/ENCODE/ raw_file_md5 033d249fa0ba302de01c5e7f81ede99c data_category TF ChIP-seq peaks Genomic feature type TF ChIP-seq IDR thresholded peaks track_description version=2024;Biosample_summary=Homo sapiens HCT116;Lab=Richard Myers, HAIB;ENCODE_internal_tags=ENCYCLOPEDIAv1,RegulomeDB_2_2,ENCYCLOPEDIAv2,RegulomeDB_2_1;Life_stage_age=adult 48 years;Reference=NR;External_resources=GEO:GSM1010846,UCSC-ENCODE-hg19:wgEncodeEH003215,FactorBook:ENCSR000BRZ;Project=ENCODE;Award=U54HG004576;Experiment_date_released=2012-09-10;Submitted_track_name=pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb;ENCODE_preferred_default=true;ENCODE_biosample_term_name=HCT116;ENCODE_cell_slims=cancer cell,epithelial cell;ENCODE_system_slims=digestive system;ENCODE_biosample_term_synonyms=HCT116 cell,HCT-116 cell;Analysis_title=ENCODE4 v1.6.1 GRCh38;GM=NR;schema=BED6+4;dataSource_pubmed_id=22955616|41168159|31713622;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/ENCODE.html;original_biosample_term_id=EFO:0002824;is_hg38_lifted=no system_category Digestive life_stage Adult track_name ENCODE HCT116 (repl. 1, 2) TF ChIP-seq EGR1 IDR thresholded peaks (narrowPeak) [Experiment: ENCSR000BRZ] [Life stage: Adult] [TF ChIP-seq peaks]
EGR1 • K562 NGFTB3RSSY4NVC • Factorbook34755879 Motif finding K562 TFBS Show metadata Download track Track metadata identifier NGFTB3RSSY4NVC data_source Factorbook Download track Download number_of_intervals 2,908 bp_covered 72,700 output_type transcription factor binding sites significant genome_build hg38 cell_type K562 biosample_type Cell line biosample_term_id EFO:0002067 tissue_category Blood encode_experiment_id ENCSR024CNP biological_replicate 1, 2 technical_replicate 1_1, 2_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 55,172 downloaded_date 07/10/2024 release_date 05/17/2017 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS_filtered.bed.gz processed_file_md5 a9ad7664ea7acf513ad11e9ed3b8bd34 wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS_filtered.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS_filtered.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/fimo_pval_filtered/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF298DXR_GRGKGCGKGGGCGGRGGNGGGGGNS.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 d39ace9628af4174638c7cd4daac540c data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens K562;Original_cell_type=K562;Lab=Michael Snyder, Stanford;System=immune system;ENCODE_BED_id=ENCFF298DXR;ENCODE_bigBed_id=ENCFF976PLK;PMID=34755879;Motif_sequence=GRGKGCGKGGGCGGRGGNGGGGGNS;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=yes;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002067;is_hg38_lifted=no system_category Cardiovascular life_stage Adult track_name Factorbook K562 (repl. 1, 2) Motif finding EGR1 transcription factor binding sites significant (bed6+11 FactorbookMotif) [Experiment: ENCSR024CNP] [Life stage: Adult] [TFBS]
EGR1 • GM12878 NGFTB47TRSAT76 • Factorbook34755879 Motif finding GM12878 TFBS Show metadata Download track Track metadata identifier NGFTB47TRSAT76 data_source Factorbook Download track Download number_of_intervals 507 bp_covered 5,577 output_type transcription factor binding sites all genome_build hg38 cell_type GM12878 biosample_type Cell line biosample_term_id EFO:0002784 tissue_category Blood encode_experiment_id ENCSR000BRG biological_replicate 3 technical_replicate 3_1 antibody EGR1 assay Motif finding file_format bed bed6+11 FactorbookMotif file_size 7,780 downloaded_date 07/10/2024 release_date 02/29/2012 date_added_to_filer 09/24/2024 processed_file_download_url https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612EIU_YCACGTSACSC_sorted.bed.gz processed_file_md5 9ab375569b9076973589cb71861f9ade wget_command wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612EIU_YCACGTSACSC_sorted.bed.gz -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ tabix_index_download wget https://filer2.niagads.org/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ENCFF612EIU_YCACGTSACSC_sorted.bed.gz.tbi -P FILER2/Annotationtracks/Factorbook/motifs/all/bed17/hg38/ link_out_url https://www.factorbook.org/ raw_file_url https://screen-beta-api.wenglab.org/factorbook_downloads/hq-occurrences/ENCFF612EIU_YCACGTSACSC.gz raw_file_download wget https://filer2.niagads.org/Annotationtracks/Downloads/FACTORBOOK/motifs/ENCFF612EIU_YCACGTSACSC.gz -P FILER2/Annotationtracks/Downloads/FACTORBOOK/motifs/ raw_file_md5 8e312ec69ff99b02483cad2c62816fcc data_category TFBS [Transcription Factor Binding Site] Genomic feature type Factorbook transcription factor binding sites track_description version=2022;Biosample_summary=Homo sapiens GM12878;Original_cell_type=GM12878;Lab=Richard Myers, HAIB;System=immune system;ENCODE_BED_id=ENCFF612EIU;ENCODE_bigBed_id=ENCFF784ATC;PMID=34755879;Motif_sequence=YCACGTSACSC;schema=BED6+11;dataSource_pubmed_id=34755879;in_trackHub=no;dataSource_acknowledgements=https://tf.lisanwanglab.org/GADB/FILER2/acknowledgements/Factorbook.html;original_biosample_term_id=EFO:0002784;is_hg38_lifted=no system_category Cardiovascular life_stage Unknown track_name Factorbook GM12878 (repl. 3) Motif finding EGR1 transcription factor binding sites all (bed6+11 FactorbookMotif) [Experiment: ENCSR000BRG] [TFBS]